FFCP PHASE1:Mm9::chr9:45714452..45714520,-: Difference between revisions
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{{FFCP|EntrezGene=235315|HGNC=|MCL_coexpression_id=321|UniProt=E0CZF4,Q8BFU3|association_with_transcript=0bp_to_ENSMUST00000160811,ENSMUST00000161187,ENSMUST00000162369_5end|description=CAGE_peak_1_at_Rnf214_5end|id=chr9:45714452..45714520,-|ontology_enrichment_celltype=CL:0000540!3.60e-14!33;CL:0000047!3.60e-14!33;CL:0000031!3.60e-14!33;CL:0000404!3.60e-14!33;CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0002319!1.00e-07!43;CL:0000221!1.79e-07!44;CL:0000133!1.79e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,3.60e-14,33;CL:0000047,3.60e-14,33;CL:0000031,3.60e-14,33;CL:0000404,3.60e-14,33;CL:0000117,1.68e-13,23;CL:0000337,1.68e-13,23;CL:0000393,5.32e-10,39;CL:0000211,5.32e-10,39;CL:0002319,1.00e-07,43;CL:0000221,1.79e-07,44;CL:0000133,1.79e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.33e-21!71;UBERON:0003075!2.33e-21!71;UBERON:0007284!2.33e-21!71;UBERON:0001017!3.01e-20!73;UBERON:0005743!3.01e-20!73;UBERON:0000033!5.42e-20!63;UBERON:0004121!2.07e-19!102;UBERON:0000924!2.07e-19!102;UBERON:0006601!2.07e-19!102;UBERON:0000073!5.54e-19!75;UBERON:0001016!5.54e-19!75;UBERON:0003056!4.16e-18!49;UBERON:0001049!5.24e-18!52;UBERON:0005068!5.24e-18!52;UBERON:0006241!5.24e-18!52;UBERON:0007135!5.24e-18!52;UBERON:0000955!1.68e-17!50;UBERON:0006238!1.68e-17!50;UBERON:0002616!4.97e-17!49;UBERON:0003080!4.20e-14!40;UBERON:0002780!1.71e-13!39;UBERON:0001890!1.71e-13!39;UBERON:0006240!1.71e-13!39;UBERON:0002020!4.37e-13!34;UBERON:0000468!1.20e-11!333;UBERON:0000153!2.97e-11!94;UBERON:0002791!4.10e-11!29;UBERON:0003528!4.10e-11!29;UBERON:0001893!4.10e-11!29;UBERON:0000025!3.95e-10!114;UBERON:0007811!6.68e-10!86;UBERON:0000922!2.80e-09!328;UBERON:0004111!6.07e-09!122;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.27e-23,64;UBERON:0003075,3.27e-23,64;UBERON:0007284,3.27e-23,64;UBERON:0010314,1.99e-21,92;UBERON:0004121,2.09e-20,95;UBERON:0000924,2.09e-20,95;UBERON:0006601,2.09e-20,95;UBERON:0001017,3.01e-20,73;UBERON:0010371,5.40e-20,73;UBERON:0000073,3.52e-19,54;UBERON:0001016,5.54e-19,75;UBERON:0003056,4.16e-18,49;UBERON:0001049,5.24e-18,52;UBERON:0005068,5.24e-18,52;UBERON:0006241,5.24e-18,52;UBERON:0007135,5.24e-18,52;UBERON:0000955,7.26e-16,47;UBERON:0006238,7.26e-16,47;UBERON:0002616,2.10e-15,46;UBERON:0003080,4.20e-14,40;UBERON:0002780,1.71e-13,39;UBERON:0001890,1.71e-13,39;UBERON:0006240,1.71e-13,39;UBERON:0002020,4.37e-13,34;UBERON:0003528,4.10e-11,29;UBERON:0002791,4.10e-11,29;UBERON:0001893,4.10e-11,29;UBERON:0000025,3.95e-10,114;UBERON:0000922,3.81e-09,320;UBERON:0004111,6.07e-09,122;UBERON:0000956,4.52e-07,21;UBERON:0001869,4.52e-07,21;UBERON:0000203,4.52e-07,21|phase1_expression=7.36684696682052,3.48975407639361,3.18499467572675,5.74682001482977,3.00537437967808,5.70789524500425,3.50418960893289,4.9066862907799,0.422366166455,0.468129052643987,3.4243593645101,3.5099749957948,3.76641605848653,3.58423649917889,5.3297561890506,4.656931149966,6.99561878128147,7.25562980323947,8.08975158273859,4.66828616977833,8.41928572495591,4.56738375524072,3.13439746966722,3.67982572424835,2.98232065387321,2.29692785646008,3.4460959692726,3.44753972297422,5.13063232532209,6.5527833737582,2.43903561720835,3.17515336729816,3.07532393792285,0,3.46621943701529,2.99222361645286,4.08338712524738,6.69650609179052,4.6880120671428,8.89990364755457,12.3528612486513,8.87959130445979,5.34061388334269,5.03587271902309,5.5757312170733,5.13930906052708,9.38869613217647,6.32272953503295,3.95435128922049,7.38833616482277,5.73944328663986,4.31257693094915,3.02008690903925,1.45072428402269,3.6970317905671,6.94600477297057,7.44986943840768,5.15672092277442,27.3127222160457,22.7466121086974,20.9164363157039,4.40497891689872,5.33576877666684,4.94944844504769,1.97773272513395,2.8419204597844,2.69640099466564,4.61061966385865,27.1666784248211,27.1361936046698,26.0802952075714,15.996455126613,11.0434270475807,29.5202826108039,29.0411777185256,22.9804696652505,16.5173821499083,23.7498448838449,20.8904885228491,31.5208227675163,37.0524956589759,31.2548022334056,12.2840519560608,18.0084035210138,20.4749652020926,19.1508580557884,19.6472919502762,24.4183274031144,4.01348824665875,7.3304413303582,8.69593466105033,2.58127163094416,2.719885334831,5.39703191637817,4.54843492213368,2.24013443548668,6.74133216632409,4.60161870960756,1.29893002301434,2.47337702157238,7.74638808771743,1.28326477414318,10.1922095882658,7.11066703153331,4.76280290224671,6.58735650235256,5.05524445014783,5.02409070763864,11.3932668804756,8.90652834388949,9.1947223186052,8.22056791442781,7.37969591219387,9.19408107370998,12.5819916635204,7.91699525376955,7.91023896749996,12.7247434089522,3.5384422077995,8.25010934731787,6.62524555381181,9.69750506270444,3.72783522436244,19.6163133997737,20.9446706813455,9.19645398750929,2.99537811264801,3.59941638596045,3.04968544975355,24.26608358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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235315 | |||
|HGNC= | |||
|MCL_coexpression_id=321 | |||
|TSSclassifier=NA | |||
|UniProt=E0CZF4,Q8BFU3 | |||
|association_with_transcript=0bp_to_ENSMUST00000160811,ENSMUST00000161187,ENSMUST00000162369_5end | |||
|cluster_id=chr9:45714452..45714520,- | |||
|description=CAGE_peak_1_at_Rnf214_5end | |||
|id=chr9:45714452..45714520,- | |||
|ontology_enrichment_celltype=CL:0000540!3.60e-14!33;CL:0000047!3.60e-14!33;CL:0000031!3.60e-14!33;CL:0000404!3.60e-14!33;CL:0000117!1.68e-13!23;CL:0000337!1.68e-13!23;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0002319!1.00e-07!43;CL:0000221!1.79e-07!44;CL:0000133!1.79e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.60e-14,33;CL:0000047,3.60e-14,33;CL:0000031,3.60e-14,33;CL:0000404,3.60e-14,33;CL:0000117,1.68e-13,23;CL:0000337,1.68e-13,23;CL:0000393,5.32e-10,39;CL:0000211,5.32e-10,39;CL:0002319,1.00e-07,43;CL:0000221,1.79e-07,44;CL:0000133,1.79e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.33e-21!71;UBERON:0003075!2.33e-21!71;UBERON:0007284!2.33e-21!71;UBERON:0001017!3.01e-20!73;UBERON:0005743!3.01e-20!73;UBERON:0000033!5.42e-20!63;UBERON:0004121!2.07e-19!102;UBERON:0000924!2.07e-19!102;UBERON:0006601!2.07e-19!102;UBERON:0000073!5.54e-19!75;UBERON:0001016!5.54e-19!75;UBERON:0003056!4.16e-18!49;UBERON:0001049!5.24e-18!52;UBERON:0005068!5.24e-18!52;UBERON:0006241!5.24e-18!52;UBERON:0007135!5.24e-18!52;UBERON:0000955!1.68e-17!50;UBERON:0006238!1.68e-17!50;UBERON:0002616!4.97e-17!49;UBERON:0003080!4.20e-14!40;UBERON:0002780!1.71e-13!39;UBERON:0001890!1.71e-13!39;UBERON:0006240!1.71e-13!39;UBERON:0002020!4.37e-13!34;UBERON:0000468!1.20e-11!333;UBERON:0000153!2.97e-11!94;UBERON:0002791!4.10e-11!29;UBERON:0003528!4.10e-11!29;UBERON:0001893!4.10e-11!29;UBERON:0000025!3.95e-10!114;UBERON:0007811!6.68e-10!86;UBERON:0000922!2.80e-09!328;UBERON:0004111!6.07e-09!122;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.27e-23,64;UBERON:0003075,3.27e-23,64;UBERON:0007284,3.27e-23,64;UBERON:0010314,1.99e-21,92;UBERON:0004121,2.09e-20,95;UBERON:0000924,2.09e-20,95;UBERON:0006601,2.09e-20,95;UBERON:0001017,3.01e-20,73;UBERON:0010371,5.40e-20,73;UBERON:0000073,3.52e-19,54;UBERON:0001016,5.54e-19,75;UBERON:0003056,4.16e-18,49;UBERON:0001049,5.24e-18,52;UBERON:0005068,5.24e-18,52;UBERON:0006241,5.24e-18,52;UBERON:0007135,5.24e-18,52;UBERON:0000955,7.26e-16,47;UBERON:0006238,7.26e-16,47;UBERON:0002616,2.10e-15,46;UBERON:0003080,4.20e-14,40;UBERON:0002780,1.71e-13,39;UBERON:0001890,1.71e-13,39;UBERON:0006240,1.71e-13,39;UBERON:0002020,4.37e-13,34;UBERON:0003528,4.10e-11,29;UBERON:0002791,4.10e-11,29;UBERON:0001893,4.10e-11,29;UBERON:0000025,3.95e-10,114;UBERON:0000922,3.81e-09,320;UBERON:0004111,6.07e-09,122;UBERON:0000956,4.52e-07,21;UBERON:0001869,4.52e-07,21;UBERON:0000203,4.52e-07,21 | |||
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| |||
|short_description=p1@Rnf214 | |||
}} |
Latest revision as of 17:53, 26 September 2015
Short description: | p1@Rnf214 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rnf214_5end |
Coexpression cluster: | MCL_coexpression_mm9:321 |
Association with transcript: | 0bp_to_ENSMUST00000160811, ENSMUST00000161187, ENSMUST00000162369_5end |
EntrezGene: | Rnf214 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.60e-14 | 33 |
neuronal stem cell | 3.60e-14 | 33 |
neuroblast | 3.60e-14 | 33 |
electrically signaling cell | 3.60e-14 | 33 |
CNS neuron (sensu Vertebrata) | 1.68e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-13 | 23 |
electrically responsive cell | 5.32e-10 | 39 |
electrically active cell | 5.32e-10 | 39 |
neural cell | 1.00e-07 | 43 |
ectodermal cell | 1.79e-07 | 44 |
neurectodermal cell | 1.79e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.27e-23 | 64 |
neural plate | 3.27e-23 | 64 |
presumptive neural plate | 3.27e-23 | 64 |
structure with developmental contribution from neural crest | 1.99e-21 | 92 |
ectoderm-derived structure | 2.09e-20 | 95 |
ectoderm | 2.09e-20 | 95 |
presumptive ectoderm | 2.09e-20 | 95 |
central nervous system | 3.01e-20 | 73 |
ecto-epithelium | 5.40e-20 | 73 |
regional part of nervous system | 3.52e-19 | 54 |
nervous system | 5.54e-19 | 75 |
pre-chordal neural plate | 4.16e-18 | 49 |
neural tube | 5.24e-18 | 52 |
neural rod | 5.24e-18 | 52 |
future spinal cord | 5.24e-18 | 52 |
neural keel | 5.24e-18 | 52 |
brain | 7.26e-16 | 47 |
future brain | 7.26e-16 | 47 |
regional part of brain | 2.10e-15 | 46 |
anterior neural tube | 4.20e-14 | 40 |
regional part of forebrain | 1.71e-13 | 39 |
forebrain | 1.71e-13 | 39 |
future forebrain | 1.71e-13 | 39 |
gray matter | 4.37e-13 | 34 |
brain grey matter | 4.10e-11 | 29 |
regional part of telencephalon | 4.10e-11 | 29 |
telencephalon | 4.10e-11 | 29 |
tube | 3.95e-10 | 114 |
embryo | 3.81e-09 | 320 |
anatomical conduit | 6.07e-09 | 122 |
cerebral cortex | 4.52e-07 | 21 |
cerebral hemisphere | 4.52e-07 | 21 |
pallium | 4.52e-07 | 21 |