FFCP PHASE1:Mm9::chr2:53937953..53937970,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67874 | |EntrezGene=67874 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=950 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JJ72 | |UniProt=Q9JJ72 | ||
|association_with_transcript=0bp_to_ENSMUST00000100089,NM_023396,uc008jrp.1_5end | |association_with_transcript=0bp_to_ENSMUST00000100089,NM_023396,uc008jrp.1_5end | ||
|cluster_id=chr2:53937953..53937970,- | |||
|description=CAGE_peak_2_at_Rprm_5end | |description=CAGE_peak_2_at_Rprm_5end | ||
|id=chr2:53937953..53937970,- | |id=chr2:53937953..53937970,- | ||
|ontology_enrichment_celltype=CL:0000221!1.59e-17!44;CL:0000133!1.59e-17!44;CL:0002319!7.36e-17!43;CL:0000055!1.72e-14!50;CL:0000540!3.92e-14!33;CL:0000047!3.92e-14!33;CL:0000031!3.92e-14!33;CL:0000404!3.92e-14!33;CL:0000117!8.45e-14!23;CL:0000337!8.45e-14!23;CL:0000393!1.72e-12!39;CL:0000211!1.72e-12!39 | |ontology_enrichment_celltype=CL:0000221!1.59e-17!44;CL:0000133!1.59e-17!44;CL:0002319!7.36e-17!43;CL:0000055!1.72e-14!50;CL:0000540!3.92e-14!33;CL:0000047!3.92e-14!33;CL:0000031!3.92e-14!33;CL:0000404!3.92e-14!33;CL:0000117!8.45e-14!23;CL:0000337!8.45e-14!23;CL:0000393!1.72e-12!39;CL:0000211!1.72e-12!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.32e-19,44;CL:0000133,3.32e-19,44;CL:0002319,1.98e-18,43;CL:0000117,4.42e-16,23;CL:0000337,4.42e-16,23;CL:0000540,8.55e-16,33;CL:0000047,8.55e-16,33;CL:0000031,8.55e-16,33;CL:0000404,8.55e-16,33;CL:0000393,1.78e-12,39;CL:0000211,1.78e-12,39;CL:0002321,7.12e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.16e-30!73;UBERON:0005743!1.16e-30!73;UBERON:0000073!1.84e-30!75;UBERON:0001016!1.84e-30!75;UBERON:0001049!4.62e-24!52;UBERON:0005068!4.62e-24!52;UBERON:0006241!4.62e-24!52;UBERON:0007135!4.62e-24!52;UBERON:0004121!1.61e-23!102;UBERON:0000924!1.61e-23!102;UBERON:0006601!1.61e-23!102;UBERON:0000955!1.84e-22!50;UBERON:0006238!1.84e-22!50;UBERON:0002780!2.27e-22!39;UBERON:0001890!2.27e-22!39;UBERON:0006240!2.27e-22!39;UBERON:0003080!2.50e-22!40;UBERON:0000033!2.89e-22!63;UBERON:0003056!3.18e-22!49;UBERON:0002616!4.63e-22!49;UBERON:0002346!7.61e-22!71;UBERON:0003075!7.61e-22!71;UBERON:0007284!7.61e-22!71;UBERON:0002020!2.45e-21!34;UBERON:0002791!2.77e-18!29;UBERON:0003528!2.77e-18!29;UBERON:0001893!2.77e-18!29;UBERON:0000956!3.04e-14!21;UBERON:0001869!3.04e-14!21;UBERON:0000203!3.04e-14!21;UBERON:0002619!1.62e-11!17;UBERON:0000153!3.05e-11!94;UBERON:0007811!3.16e-10!86;UBERON:0002021!3.80e-08!10;UBERON:0000411!3.80e-08!10;UBERON:0001950!3.80e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.57e-35,73;UBERON:0001016,4.40e-34,75;UBERON:0000073,2.61e-29,54;UBERON:0004121,6.77e-29,95;UBERON:0000924,6.77e-29,95;UBERON:0006601,6.77e-29,95;UBERON:0002346,8.15e-29,64;UBERON:0003075,8.15e-29,64;UBERON:0007284,8.15e-29,64;UBERON:0001049,7.13e-28,52;UBERON:0005068,7.13e-28,52;UBERON:0006241,7.13e-28,52;UBERON:0007135,7.13e-28,52;UBERON:0003056,2.00e-26,49;UBERON:0002780,2.92e-26,39;UBERON:0001890,2.92e-26,39;UBERON:0006240,2.92e-26,39;UBERON:0003080,3.27e-26,40;UBERON:0002020,4.93e-25,34;UBERON:0010371,6.49e-25,73;UBERON:0000955,9.48e-25,47;UBERON:0006238,9.48e-25,47;UBERON:0002616,2.77e-24,46;UBERON:0003528,2.09e-21,29;UBERON:0002791,2.09e-21,29;UBERON:0001893,2.09e-21,29;UBERON:0000956,1.31e-16,21;UBERON:0001869,1.31e-16,21;UBERON:0000203,1.31e-16,21;UBERON:0010314,2.06e-15,92;UBERON:0002619,2.26e-13,17;UBERON:0002021,2.24e-09,10;UBERON:0000411,2.24e-09,10;UBERON:0001950,2.24e-09,10 | |||
|phase1_expression=30.5884297970156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.4192770370732,0.367093504323363,1.56478268869608,9.3750817243592,13.1811709640683,5.44403717407994,3.07970127575798,12.9377307928474,0,0,0,0.514518872071894,0.286533439938757,0.515672092277442,20.2316460859598,17.4567023159771,15.8457850876545,6.43804610931351,0.889294796111139,0.449949858640699,0,0,8.98800331555214,12.6792040756113,55.577632197344,57.7825416059636,59.9426139851439,18.2816630018434,17.0068776532742,29.5202826108039,27.5076501822338,29.4150011715207,3.30347642998166,7.02280359468532,5.06901559745603,17.4089899803856,21.3166209593614,18.7528813400434,4.18774498502071,20.8222165711722,13.2934475565825,16.4992007865254,17.2269733766915,26.655120753018,0.757261933331841,1.51143120213571,0,0,0,0,0,0,0.561777680527007,0,0,0,29.9996484124329,0,0,0,0,0,0,0.5709193985953,0,0,1.56136794089522,0.304465478312141,0.691846491768175,0.60289056221049,1.29347577849275,0,0,0,0,0.323533699894818,0,0,0,0,0.83778682725382,0.510914110417183,0,0,0,2.24685959107234,5.49000723382352,13.3193613239636,14.4274185759589,17.9000820131231,2.70124457927428,9.24775199486219,3.97173519016234,2.48813941220186,6.57079171927554,0,4.55421550369463,6.66716102857071,3.96136685571768,2.41127708537144,2.31324097114515,2.3060469651273,3.27956035959051,1.29351685369508,3.01795190105979,4.9167580843633,10.9089696981648,6.1374805079721,3.61461423993277,0.696504333044333,1.02891068203972,1.79130840136644,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,4.83666881697493,13.0688857721691,0.330418782983798,0,1.70630600428187,1.39342003116263,0.257734922644187,0.403367049246685,0.444756087689741,0.380451252225118,0,0.329397909448022,1.00534083520108,0.994782360205754,0.779856348476481,0,0.216138049874694,0.199141273254367,9.67306294860717,5.36968009265725,4.50830942692322,5.09128319613286,3.87904974335251,6.17195215034803,0.948548056863859,0.295220295959204,0,0.246794327843601,0,0.500535317148282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.923765950833023,1.32643988239339,0.651859905768103,0.169745085775188,0.234690248288502,0.670025029767263,0.238043640886014,0.585400943573396,0.315270288212382,0.44292937929755,0.478364305972461,0.655453258862952,0.345369963731791,0.289298117163023,0,0,0,0,1.44495530989013,1.40654023910644,0,0,2.83957397474631,1.56175497718655,1.50796378412959,1.43381278771531,1.33679204449436,0.849229592366497,2.02405350837447,6.13737301613755,2.37172666767914,5.78378369559253,1.70328102249922,1.42452482933804,1.62886959353576,2.63952196756057,1.32745138339963,3.39892890616974,6.04647113929502,2.26326095707078,3.2483208216885,1.53717573971964,0.775284879504663,1.45413491791002,1.06949213515416,0,0,0,5.10659408630682,4.32146625675145,9.18446654857557,16.289614662401,10.8177542521787,10.167022603318,10.3665882979336,7.61162372786498,0.469343416127421,0.42366414172764,0,0,0.645857706783622,0.482503399425247,0.358117032009409,0.164140899745061,0.291480836629851,1.29797711407357,0,2.47664241555867,0.740778109478847,0,0.136694227721025,0,0.339956859987711,0.419854356970974,0.138199973804424,0,1.58167996790568,1.42323626988794,1.51207477150522,0.418176592028937,0.655087691238533,0.674321731924103,0.826534557253359,1.04702376793612,0.388844919875379,0,0,0.299033092087958,0.165458490457098,1.55560950675238,0.774958940866387,0.844780627453891,0.58678619322877,0.39061315453185,0.104859344425711,0,0,0.316011120628178,0.405450430580328,0.205421914329655,0,0.537080087002444,0.198681354781265,0,0.147689527174577,0.201932899896295,0,0,0.194915761479505,0.0962118416403295,0.116876902181569,0,0.221985953374065,0.179427713218951,0,0,11.2609485270709,5.86085197655248,0.428736758158132,0.501572104035363,48.5686584650677,52.9374021983253,51.5605962095457,45.1973869563898,49.3259414234862,37.0143009720953,35.7761925122857,22.9663813644352,31.2668262199101,28.4768171463501,6.12345350746642,6.78342284781753,5.29274177837816,3.8897074730927,7.96530017986333,6.98605332110054,2.889207461421,2.26638562962784,3.20919209591815,3.28506375292937,3.8021894983536,2.45214243801899,3.65201879132541,3.52138338226781,3.79074095107048,2.85776214769844,4.63537303779422,3.27945674788299,3.70877310722976,2.50238164228475,5.82877729055206,3.01708870470874,4.5302876089991,1.88950341622027,3.85848459702856,3.55381353145041,3.65855945745545,2.89376682581627,2.98769050460896,2.80571135828869,4.03359061622192,4.92522411877817,4.50154147486658,3.87342102964915,2.3148793317737,5.9954538705107,2.33931608445408,1.93383948643468,1.3390183244819,0.220591419119515,0.463735671240843 | |phase1_expression=30.5884297970156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0.319984845586813,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,1.4192770370732,0.367093504323363,1.56478268869608,9.3750817243592,13.1811709640683,5.44403717407994,3.07970127575798,12.9377307928474,0,0,0,0.514518872071894,0.286533439938757,0.515672092277442,20.2316460859598,17.4567023159771,15.8457850876545,6.43804610931351,0.889294796111139,0.449949858640699,0,0,8.98800331555214,12.6792040756113,55.577632197344,57.7825416059636,59.9426139851439,18.2816630018434,17.0068776532742,29.5202826108039,27.5076501822338,29.4150011715207,3.30347642998166,7.02280359468532,5.06901559745603,17.4089899803856,21.3166209593614,18.7528813400434,4.18774498502071,20.8222165711722,13.2934475565825,16.4992007865254,17.2269733766915,26.655120753018,0.757261933331841,1.51143120213571,0,0,0,0,0,0,0.561777680527007,0,0,0,29.9996484124329,0,0,0,0,0,0,0.5709193985953,0,0,1.56136794089522,0.304465478312141,0.691846491768175,0.60289056221049,1.29347577849275,0,0,0,0,0.323533699894818,0,0,0,0,0.83778682725382,0.510914110417183,0,0,0,2.24685959107234,5.49000723382352,13.3193613239636,14.4274185759589,17.9000820131231,2.70124457927428,9.24775199486219,3.97173519016234,2.48813941220186,6.57079171927554,0,4.55421550369463,6.66716102857071,3.96136685571768,2.41127708537144,2.31324097114515,2.3060469651273,3.27956035959051,1.29351685369508,3.01795190105979,4.9167580843633,10.9089696981648,6.1374805079721,3.61461423993277,0.696504333044333,1.02891068203972,1.79130840136644,0,0,0,0,0.234526059981096,0.36012412292203,0,0,0.154267112887378,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0.32833492815819,0.0810688095458557,0,0,0.134206418760372,4.83666881697493,13.0688857721691,0.330418782983798,0,1.70630600428187,1.39342003116263,0.257734922644187,0.403367049246685,0.444756087689741,0.380451252225118,0,0.329397909448022,1.00534083520108,0.994782360205754,0.779856348476481,0,0.216138049874694,0.199141273254367,9.67306294860717,5.36968009265725,4.50830942692322,5.09128319613286,3.87904974335251,6.17195215034803,0.948548056863859,0.295220295959204,0,0.246794327843601,0,0.500535317148282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.923765950833023,1.32643988239339,0.651859905768103,0.169745085775188,0.234690248288502,0.670025029767263,0.238043640886014,0.585400943573396,0.315270288212382,0.44292937929755,0.478364305972461,0.655453258862952,0.345369963731791,0.289298117163023,0,0,0,0,1.44495530989013,1.40654023910644,0,0,2.83957397474631,1.56175497718655,1.50796378412959,1.43381278771531,1.33679204449436,0.849229592366497,2.02405350837447,6.13737301613755,2.37172666767914,5.78378369559253,1.70328102249922,1.42452482933804,1.62886959353576,2.63952196756057,1.32745138339963,3.39892890616974,6.04647113929502,2.26326095707078,3.2483208216885,1.53717573971964,0.775284879504663,1.45413491791002,1.06949213515416,0,0,0,5.10659408630682,4.32146625675145,9.18446654857557,16.289614662401,10.8177542521787,10.167022603318,10.3665882979336,7.61162372786498,0.469343416127421,0.42366414172764,0,0,0.645857706783622,0.482503399425247,0.358117032009409,0.164140899745061,0.291480836629851,1.29797711407357,0,2.47664241555867,0.740778109478847,0,0.136694227721025,0,0.339956859987711,0.419854356970974,0.138199973804424,0,1.58167996790568,1.42323626988794,1.51207477150522,0.418176592028937,0.655087691238533,0.674321731924103,0.826534557253359,1.04702376793612,0.388844919875379,0,0,0.299033092087958,0.165458490457098,1.55560950675238,0.774958940866387,0.844780627453891,0.58678619322877,0.39061315453185,0.104859344425711,0,0,0.316011120628178,0.405450430580328,0.205421914329655,0,0.537080087002444,0.198681354781265,0,0.147689527174577,0.201932899896295,0,0,0.194915761479505,0.0962118416403295,0.116876902181569,0,0.221985953374065,0.179427713218951,0,0,11.2609485270709,5.86085197655248,0.428736758158132,0.501572104035363,48.5686584650677,52.9374021983253,51.5605962095457,45.1973869563898,49.3259414234862,37.0143009720953,35.7761925122857,22.9663813644352,31.2668262199101,28.4768171463501,6.12345350746642,6.78342284781753,5.29274177837816,3.8897074730927,7.96530017986333,6.98605332110054,2.889207461421,2.26638562962784,3.20919209591815,3.28506375292937,3.8021894983536,2.45214243801899,3.65201879132541,3.52138338226781,3.79074095107048,2.85776214769844,4.63537303779422,3.27945674788299,3.70877310722976,2.50238164228475,5.82877729055206,3.01708870470874,4.5302876089991,1.88950341622027,3.85848459702856,3.55381353145041,3.65855945745545,2.89376682581627,2.98769050460896,2.80571135828869,4.03359061622192,4.92522411877817,4.50154147486658,3.87342102964915,2.3148793317737,5.9954538705107,2.33931608445408,1.93383948643468,1.3390183244819,0.220591419119515,0.463735671240843 | ||
|short_description=p2@Rprm | |short_description=p2@Rprm | ||
}} | }} |
Latest revision as of 18:47, 26 September 2015
Short description: | p2@Rprm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rprm_5end |
Coexpression cluster: | MCL_coexpression_mm9:950 |
Association with transcript: | 0bp_to_ENSMUST00000100089, NM_023396, uc008jrp.1_5end |
EntrezGene: | Rprm |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.32e-19 | 44 |
neurectodermal cell | 3.32e-19 | 44 |
neural cell | 1.98e-18 | 43 |
CNS neuron (sensu Vertebrata) | 4.42e-16 | 23 |
neuroblast (sensu Vertebrata) | 4.42e-16 | 23 |
neuron | 8.55e-16 | 33 |
neuronal stem cell | 8.55e-16 | 33 |
neuroblast | 8.55e-16 | 33 |
electrically signaling cell | 8.55e-16 | 33 |
electrically responsive cell | 1.78e-12 | 39 |
electrically active cell | 1.78e-12 | 39 |
embryonic cell | 7.12e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.57e-35 | 73 |
nervous system | 4.40e-34 | 75 |
regional part of nervous system | 2.61e-29 | 54 |
ectoderm-derived structure | 6.77e-29 | 95 |
ectoderm | 6.77e-29 | 95 |
presumptive ectoderm | 6.77e-29 | 95 |
neurectoderm | 8.15e-29 | 64 |
neural plate | 8.15e-29 | 64 |
presumptive neural plate | 8.15e-29 | 64 |
neural tube | 7.13e-28 | 52 |
neural rod | 7.13e-28 | 52 |
future spinal cord | 7.13e-28 | 52 |
neural keel | 7.13e-28 | 52 |
pre-chordal neural plate | 2.00e-26 | 49 |
regional part of forebrain | 2.92e-26 | 39 |
forebrain | 2.92e-26 | 39 |
future forebrain | 2.92e-26 | 39 |
anterior neural tube | 3.27e-26 | 40 |
gray matter | 4.93e-25 | 34 |
ecto-epithelium | 6.49e-25 | 73 |
brain | 9.48e-25 | 47 |
future brain | 9.48e-25 | 47 |
regional part of brain | 2.77e-24 | 46 |
brain grey matter | 2.09e-21 | 29 |
regional part of telencephalon | 2.09e-21 | 29 |
telencephalon | 2.09e-21 | 29 |
cerebral cortex | 1.31e-16 | 21 |
cerebral hemisphere | 1.31e-16 | 21 |
pallium | 1.31e-16 | 21 |
structure with developmental contribution from neural crest | 2.06e-15 | 92 |
regional part of cerebral cortex | 2.26e-13 | 17 |
occipital lobe | 2.24e-09 | 10 |
visual cortex | 2.24e-09 | 10 |
neocortex | 2.24e-09 | 10 |