FFCP PHASE1:Mm9::chr17:70318727..70318780,+: Difference between revisions
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{{FFCP|EntrezGene=224997|HGNC=|MCL_coexpression_id=1|UniProt=D3Z709|association_with_transcript=0bp_to_ENSMUST00000130971,ENSMUST00000146730_5end|description=CAGE_peak_1_at_Dlgap1_5end|id=chr17:70318727..70318780,+|ontology_enrichment_celltype=CL:0000540!8.45e-15!33;CL:0000047!8.45e-15!33;CL:0000031!8.45e-15!33;CL:0000404!8.45e-15!33;CL:0000117!1.40e-11!23;CL:0000337!1.40e-11!23;CL:0000221!7.90e-11!44;CL:0000133!7.90e-11!44;CL:0002319!1.24e-10!43;CL:0000393!4.26e-10!39;CL:0000211!4.26e-10!39;CL:0000055!5.39e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.06e-17,33;CL:0000047,1.06e-17,33;CL:0000031,1.06e-17,33;CL:0000404,1.06e-17,33;CL:0000117,8.94e-14,23;CL:0000337,8.94e-14,23;CL:0000393,6.65e-13,39;CL:0000211,6.65e-13,39;CL:0000221,9.03e-11,44;CL:0000133,9.03e-11,44;CL:0002319,1.56e-10,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.41e-27!71;UBERON:0003075!5.41e-27!71;UBERON:0007284!5.41e-27!71;UBERON:0001017!7.71e-26!73;UBERON:0005743!7.71e-26!73;UBERON:0004121!9.77e-26!102;UBERON:0000924!9.77e-26!102;UBERON:0006601!9.77e-26!102;UBERON:0000073!6.30e-25!75;UBERON:0001016!6.30e-25!75;UBERON:0001049!1.17e-19!52;UBERON:0005068!1.17e-19!52;UBERON:0006241!1.17e-19!52;UBERON:0007135!1.17e-19!52;UBERON:0000033!1.17e-19!63;UBERON:0000955!7.52e-19!50;UBERON:0006238!7.52e-19!50;UBERON:0002616!4.16e-18!49;UBERON:0002020!1.24e-17!34;UBERON:0003056!9.15e-17!49;UBERON:0002791!8.35e-15!29;UBERON:0003528!8.35e-15!29;UBERON:0001893!8.35e-15!29;UBERON:0003080!9.44e-15!40;UBERON:0002780!3.73e-14!39;UBERON:0001890!3.73e-14!39;UBERON:0006240!3.73e-14!39;UBERON:0000956!1.24e-10!21;UBERON:0001869!1.24e-10!21;UBERON:0000203!1.24e-10!21;UBERON:0002619!2.23e-09!17;UBERON:0002021!4.05e-08!10;UBERON:0000411!4.05e-08!10;UBERON:0001950!4.05e-08!10;UBERON:0007811!1.25e-07!86;UBERON:0000468!4.70e-07!333;UBERON:0000153!8.59e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.05e-27,73;UBERON:0001016,1.85e-25,75;UBERON:0002346,1.26e-23,64;UBERON:0003075,1.26e-23,64;UBERON:0007284,1.26e-23,64;UBERON:0000073,4.70e-22,54;UBERON:0004121,9.02e-22,95;UBERON:0000924,9.02e-22,95;UBERON:0006601,9.02e-22,95;UBERON:0001049,1.86e-20,52;UBERON:0005068,1.86e-20,52;UBERON:0006241,1.86e-20,52;UBERON:0007135,1.86e-20,52;UBERON:0002020,3.67e-20,34;UBERON:0010371,1.42e-19,73;UBERON:0000955,2.87e-17,47;UBERON:0006238,2.87e-17,47;UBERON:0010314,3.03e-17,92;UBERON:0003528,9.74e-17,29;UBERON:0002791,9.74e-17,29;UBERON:0001893,9.74e-17,29;UBERON:0002616,1.95e-16,46;UBERON:0003056,2.71e-16,49;UBERON:0003080,6.11e-15,40;UBERON:0002780,3.01e-14,39;UBERON:0001890,3.01e-14,39;UBERON:0006240,3.01e-14,39;UBERON:0000956,1.09e-11,21;UBERON:0001869,1.09e-11,21;UBERON:0000203,1.09e-11,21;UBERON:0002619,3.86e-10,17;UBERON:0002021,1.48e-09,10;UBERON:0000411,1.48e-09,10;UBERON:0001950,1.48e-09,10|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2872727453797,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0.65407546914134,0.219686182734472,0.58328969722285,0.279972843250725,0,0,0,0,0.257259436035947,0,0,7.89034197352431,6.87688273053643,3.80298842103708,0,0,0.449949858640699,0,0,0.599200221036809,0.384218305321555,3.94020526772215,4.18518408828241,2.73422449756797,18.2816630018434,22.9703282589678,8.08439274818697,5.271500906003,13.7882817991503,33.0347642998166,55.0332427147159,43.9314685112856,9.36392642884376,8.78281378583133,10.939180781692,20.6595419261022,25.8870800614573,28.7260705820403,27.6950870345248,26.6235043094322,10.9975673036927,0.075726193333184,0.226714680320357,0,0,0,4.31762553310254,1.29955283489534,1.79210754838934,1.68533304158102,0,0,0,3.09855523508697,0,0,0,0,0,0.505524445014783,2.16949371466214,0,23.1569736941127,3.12273588179045,10.9607572192371,8.53277339847416,13.565037649736,16.2272415847273,11.8126595849895,0,0.722996784599558,0,0.323533699894818,0.220841518460394,0,0,79.0508151931177,66.8134994734922,0,0,0,0,31.3062436356079,43.4625572677695,13.1937069718508,81.1759575297931,74.4131980831262,48.6224024269371,60.0292673350703,2.03678727700633,0.248813941220186,1.0108910337347,4.41927897361595,0.650602214813519,0.689706313300419,1.98068342785884,2.26057226753573,6.39543092022482,6.40568601424249,6.09061209638237,16.815719098036,0,1.70195472151037,1.93546236580344,0.657587197282725,0,0.696504333044333,0.411564272815887,3.38358253591438,0,0,0,0,0,0,0.473489471170421,0,0.154267112887378,0.232533944750408,0,0,0,0,0.0810688095458557,0.292399974850665,0.439100230582101,0.268412837520744,118.393241041604,13.5834088340655,0,0,1.70630600428187,1.39342003116263,1.9330119198314,0.80673409849337,0.667134131534611,0.760902504450237,0,0.164698954724011,0,0.795825888164603,0.19496408711912,0.898819408654221,0,0.199141273254367,0,1.48523066392647,1.1270773567308,0,0.581857461502877,0.701358198903186,0.379419222745544,0.590440591918409,0.627994911365499,0.493588655687202,2.07516838961004,0.166845105716094,0.589676985339609,0,0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=224997 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z709 | |||
|association_with_transcript=0bp_to_ENSMUST00000130971,ENSMUST00000146730_5end | |||
|cluster_id=chr17:70318727..70318780,+ | |||
|description=CAGE_peak_1_at_Dlgap1_5end | |||
|id=chr17:70318727..70318780,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.45e-15!33;CL:0000047!8.45e-15!33;CL:0000031!8.45e-15!33;CL:0000404!8.45e-15!33;CL:0000117!1.40e-11!23;CL:0000337!1.40e-11!23;CL:0000221!7.90e-11!44;CL:0000133!7.90e-11!44;CL:0002319!1.24e-10!43;CL:0000393!4.26e-10!39;CL:0000211!4.26e-10!39;CL:0000055!5.39e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.06e-17,33;CL:0000047,1.06e-17,33;CL:0000031,1.06e-17,33;CL:0000404,1.06e-17,33;CL:0000117,8.94e-14,23;CL:0000337,8.94e-14,23;CL:0000393,6.65e-13,39;CL:0000211,6.65e-13,39;CL:0000221,9.03e-11,44;CL:0000133,9.03e-11,44;CL:0002319,1.56e-10,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.41e-27!71;UBERON:0003075!5.41e-27!71;UBERON:0007284!5.41e-27!71;UBERON:0001017!7.71e-26!73;UBERON:0005743!7.71e-26!73;UBERON:0004121!9.77e-26!102;UBERON:0000924!9.77e-26!102;UBERON:0006601!9.77e-26!102;UBERON:0000073!6.30e-25!75;UBERON:0001016!6.30e-25!75;UBERON:0001049!1.17e-19!52;UBERON:0005068!1.17e-19!52;UBERON:0006241!1.17e-19!52;UBERON:0007135!1.17e-19!52;UBERON:0000033!1.17e-19!63;UBERON:0000955!7.52e-19!50;UBERON:0006238!7.52e-19!50;UBERON:0002616!4.16e-18!49;UBERON:0002020!1.24e-17!34;UBERON:0003056!9.15e-17!49;UBERON:0002791!8.35e-15!29;UBERON:0003528!8.35e-15!29;UBERON:0001893!8.35e-15!29;UBERON:0003080!9.44e-15!40;UBERON:0002780!3.73e-14!39;UBERON:0001890!3.73e-14!39;UBERON:0006240!3.73e-14!39;UBERON:0000956!1.24e-10!21;UBERON:0001869!1.24e-10!21;UBERON:0000203!1.24e-10!21;UBERON:0002619!2.23e-09!17;UBERON:0002021!4.05e-08!10;UBERON:0000411!4.05e-08!10;UBERON:0001950!4.05e-08!10;UBERON:0007811!1.25e-07!86;UBERON:0000468!4.70e-07!333;UBERON:0000153!8.59e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.05e-27,73;UBERON:0001016,1.85e-25,75;UBERON:0002346,1.26e-23,64;UBERON:0003075,1.26e-23,64;UBERON:0007284,1.26e-23,64;UBERON:0000073,4.70e-22,54;UBERON:0004121,9.02e-22,95;UBERON:0000924,9.02e-22,95;UBERON:0006601,9.02e-22,95;UBERON:0001049,1.86e-20,52;UBERON:0005068,1.86e-20,52;UBERON:0006241,1.86e-20,52;UBERON:0007135,1.86e-20,52;UBERON:0002020,3.67e-20,34;UBERON:0010371,1.42e-19,73;UBERON:0000955,2.87e-17,47;UBERON:0006238,2.87e-17,47;UBERON:0010314,3.03e-17,92;UBERON:0003528,9.74e-17,29;UBERON:0002791,9.74e-17,29;UBERON:0001893,9.74e-17,29;UBERON:0002616,1.95e-16,46;UBERON:0003056,2.71e-16,49;UBERON:0003080,6.11e-15,40;UBERON:0002780,3.01e-14,39;UBERON:0001890,3.01e-14,39;UBERON:0006240,3.01e-14,39;UBERON:0000956,1.09e-11,21;UBERON:0001869,1.09e-11,21;UBERON:0000203,1.09e-11,21;UBERON:0002619,3.86e-10,17;UBERON:0002021,1.48e-09,10;UBERON:0000411,1.48e-09,10;UBERON:0001950,1.48e-09,10 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.2872727453797,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0.65407546914134,0.219686182734472,0.58328969722285,0.279972843250725,0,0,0,0,0.257259436035947,0,0,7.89034197352431,6.87688273053643,3.80298842103708,0,0,0.449949858640699,0,0,0.599200221036809,0.384218305321555,3.94020526772215,4.18518408828241,2.73422449756797,18.2816630018434,22.9703282589678,8.08439274818697,5.271500906003,13.7882817991503,33.0347642998166,55.0332427147159,43.9314685112856,9.36392642884376,8.78281378583133,10.939180781692,20.6595419261022,25.8870800614573,28.7260705820403,27.6950870345248,26.6235043094322,10.9975673036927,0.075726193333184,0.226714680320357,0,0,0,4.31762553310254,1.29955283489534,1.79210754838934,1.68533304158102,0,0,0,3.09855523508697,0,0,0,0,0,0.505524445014783,2.16949371466214,0,23.1569736941127,3.12273588179045,10.9607572192371,8.53277339847416,13.565037649736,16.2272415847273,11.8126595849895,0,0.722996784599558,0,0.323533699894818,0.220841518460394,0,0,79.0508151931177,66.8134994734922,0,0,0,0,31.3062436356079,43.4625572677695,13.1937069718508,81.1759575297931,74.4131980831262,48.6224024269371,60.0292673350703,2.03678727700633,0.248813941220186,1.0108910337347,4.41927897361595,0.650602214813519,0.689706313300419,1.98068342785884,2.26057226753573,6.39543092022482,6.40568601424249,6.09061209638237,16.815719098036,0,1.70195472151037,1.93546236580344,0.657587197282725,0,0.696504333044333,0.411564272815887,3.38358253591438,0,0,0,0,0,0,0.473489471170421,0,0.154267112887378,0.232533944750408,0,0,0,0,0.0810688095458557,0.292399974850665,0.439100230582101,0.268412837520744,118.393241041604,13.5834088340655,0,0,1.70630600428187,1.39342003116263,1.9330119198314,0.80673409849337,0.667134131534611,0.760902504450237,0,0.164698954724011,0,0.795825888164603,0.19496408711912,0.898819408654221,0,0.199141273254367,0,1.48523066392647,1.1270773567308,0,0.581857461502877,0.701358198903186,0.379419222745544,0.590440591918409,0.627994911365499,0.493588655687202,2.07516838961004,0.166845105716094,0.589676985339609,0,0,0.241177159752417,0,0,0.162135226775035,0.549122826376163,0,0.372140947668503,1.87222603868736,0.505157755894224,0.717589654087649,0.482443521363367,0,0.189491411770485,0.488894929326078,0.509235257325564,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0.54390568381871,0,0.275936746304732,25.6880943980467,26.9586879162067,0,0,7.2566890465739,10.1514073517126,5.81643173878557,1.91175038362042,5.79276552614225,2.83076530788832,9.71545684019746,11.6902343164525,9.88219444866309,161.624622160169,4.68402281187286,0.890328018336276,2.11753047159649,3.79431282836832,0,0.242780636154981,0.302323556964751,0.377210159511796,0.295301892880773,0.614870295887855,0.775284879504663,0.363533729477506,0.712994756769443,0,0,0,2.7235168460303,0.900305470156551,0,0.428674070063185,0.532020700926821,0.535106452806212,1.97458824722545,1.8267896946876,0.23467170806371,0,1.7642271844397,0.16488625294148,0,0.120625849856312,0.119372344003136,0.164140899745061,0.291480836629851,24.8469904694083,0,0,0,0,0,0,0,0,0,0,0.474503990371703,0.609958401380546,1.51207477150522,1.67270636811575,0.655087691238533,0.404593039154462,1.23980183588004,0,0.259229946583586,0,2.25477175473676,6.13017838780313,3.30916980914195,3.50012139019286,2.32487682259916,2.02747350588934,3.16864544343536,1.17183946359555,2.62148361064277,4.34851417486811,3.74439008135225,0.632022241256357,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0.116876902181569,0,0.443971906748129,0.179427713218951,0.167884616364078,0.386379188064381,1.31377732815827,2.38097111547445,0.214368379079066,0.501572104035363,60.9931990026432,61.2232564554545,56.7166558305003,69.0849793021624,62.3425092991284,71.7624202520215,58.7269575201671,64.3959320610635,73.4090702554411,66.2733199042329,0.726511433089237,1.19707462020309,2.04880326904961,4.86213434136588,1.46729213839588,2.5738091183002,7.11189528965169,3.5025959730612,4.1719497246936,4.54854981174835,3.54871019846336,2.45214243801899,3.09016974650612,4.1616349063165,4.47996657853783,5.71552429539688,4.28772005995965,3.6652751888104,2.88460130562315,2.94397840268795,2.40008476669791,3.54951612318675,4.29185141905178,4.0696996657052,4.04670335785922,3.9768865709088,3.65855945745545,6.05060336307039,3.39510284614654,2.80571135828869,4.27086065247027,3.64466584789585,5.32000356120596,4.80304207676495,3.47231899766054,6.49507502638659,4.21076895201735,1.50409737833809,2.10417165275728,0.882365676478062,1.39120701372253 | |||
|short_description=p1@Dlgap1 | |||
}} |
Latest revision as of 19:55, 26 September 2015
Short description: | p1@Dlgap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dlgap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000130971, ENSMUST00000146730_5end |
EntrezGene: | Dlgap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.06e-17 | 33 |
neuronal stem cell | 1.06e-17 | 33 |
neuroblast | 1.06e-17 | 33 |
electrically signaling cell | 1.06e-17 | 33 |
CNS neuron (sensu Vertebrata) | 8.94e-14 | 23 |
neuroblast (sensu Vertebrata) | 8.94e-14 | 23 |
electrically responsive cell | 6.65e-13 | 39 |
electrically active cell | 6.65e-13 | 39 |
ectodermal cell | 9.03e-11 | 44 |
neurectodermal cell | 9.03e-11 | 44 |
neural cell | 1.56e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.05e-27 | 73 |
nervous system | 1.85e-25 | 75 |
neurectoderm | 1.26e-23 | 64 |
neural plate | 1.26e-23 | 64 |
presumptive neural plate | 1.26e-23 | 64 |
regional part of nervous system | 4.70e-22 | 54 |
ectoderm-derived structure | 9.02e-22 | 95 |
ectoderm | 9.02e-22 | 95 |
presumptive ectoderm | 9.02e-22 | 95 |
neural tube | 1.86e-20 | 52 |
neural rod | 1.86e-20 | 52 |
future spinal cord | 1.86e-20 | 52 |
neural keel | 1.86e-20 | 52 |
gray matter | 3.67e-20 | 34 |
ecto-epithelium | 1.42e-19 | 73 |
brain | 2.87e-17 | 47 |
future brain | 2.87e-17 | 47 |
structure with developmental contribution from neural crest | 3.03e-17 | 92 |
brain grey matter | 9.74e-17 | 29 |
regional part of telencephalon | 9.74e-17 | 29 |
telencephalon | 9.74e-17 | 29 |
regional part of brain | 1.95e-16 | 46 |
pre-chordal neural plate | 2.71e-16 | 49 |
anterior neural tube | 6.11e-15 | 40 |
regional part of forebrain | 3.01e-14 | 39 |
forebrain | 3.01e-14 | 39 |
future forebrain | 3.01e-14 | 39 |
cerebral cortex | 1.09e-11 | 21 |
cerebral hemisphere | 1.09e-11 | 21 |
pallium | 1.09e-11 | 21 |
regional part of cerebral cortex | 3.86e-10 | 17 |
occipital lobe | 1.48e-09 | 10 |
visual cortex | 1.48e-09 | 10 |
neocortex | 1.48e-09 | 10 |