FFCP PHASE1:Mm9::chr4:155266390..155266413,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=140500 | |EntrezGene=140500 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_ENSMUST00000137726_5end | |association_with_transcript=-7bp_to_ENSMUST00000137726_5end | ||
|cluster_id=chr4:155266390..155266413,+ | |||
|description=CAGE_peak_3_at_Acap3_5end | |description=CAGE_peak_3_at_Acap3_5end | ||
|id=chr4:155266390..155266413,+ | |id=chr4:155266390..155266413,+ | ||
|ontology_enrichment_celltype=CL:0000221!5.04e-10!44;CL:0000133!5.04e-10!44;CL:0002319!5.09e-10!43;CL:0000055!1.31e-09!50;CL:0000393!3.01e-09!39;CL:0000211!3.01e-09!39;CL:0000540!6.07e-09!33;CL:0000047!6.07e-09!33;CL:0000031!6.07e-09!33;CL:0000404!6.07e-09!33;CL:0000117!1.08e-08!23;CL:0000337!1.08e-08!23 | |ontology_enrichment_celltype=CL:0000221!5.04e-10!44;CL:0000133!5.04e-10!44;CL:0002319!5.09e-10!43;CL:0000055!1.31e-09!50;CL:0000393!3.01e-09!39;CL:0000211!3.01e-09!39;CL:0000540!6.07e-09!33;CL:0000047!6.07e-09!33;CL:0000031!6.07e-09!33;CL:0000404!6.07e-09!33;CL:0000117!1.08e-08!23;CL:0000337!1.08e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.03e-10,44;CL:0000133,1.03e-10,44;CL:0002319,1.04e-10,43;CL:0000393,7.08e-10,39;CL:0000211,7.08e-10,39;CL:0000117,1.43e-09,23;CL:0000337,1.43e-09,23;CL:0000540,1.49e-09,33;CL:0000047,1.49e-09,33;CL:0000031,1.49e-09,33;CL:0000404,1.49e-09,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.06e-18!75;UBERON:0001016!1.06e-18!75;UBERON:0004121!3.62e-18!102;UBERON:0000924!3.62e-18!102;UBERON:0006601!3.62e-18!102;UBERON:0001017!9.19e-18!73;UBERON:0005743!9.19e-18!73;UBERON:0002020!3.12e-17!34;UBERON:0002791!3.41e-15!29;UBERON:0003528!3.41e-15!29;UBERON:0001893!3.41e-15!29;UBERON:0001049!3.58e-15!52;UBERON:0005068!3.58e-15!52;UBERON:0006241!3.58e-15!52;UBERON:0007135!3.58e-15!52;UBERON:0002346!1.01e-14!71;UBERON:0003075!1.01e-14!71;UBERON:0007284!1.01e-14!71;UBERON:0000955!4.29e-13!50;UBERON:0006238!4.29e-13!50;UBERON:0000033!8.85e-13!63;UBERON:0002616!1.24e-12!49;UBERON:0003080!1.28e-11!40;UBERON:0003056!2.10e-11!49;UBERON:0000956!2.27e-11!21;UBERON:0001869!2.27e-11!21;UBERON:0000203!2.27e-11!21;UBERON:0002780!2.29e-11!39;UBERON:0001890!2.29e-11!39;UBERON:0006240!2.29e-11!39;UBERON:0002619!3.04e-09!17;UBERON:0007811!1.79e-07!86;UBERON:0002021!2.01e-07!10;UBERON:0000411!2.01e-07!10;UBERON:0001950!2.01e-07!10;UBERON:0000153!4.74e-07!94 | |ontology_enrichment_uberon=UBERON:0000073!1.06e-18!75;UBERON:0001016!1.06e-18!75;UBERON:0004121!3.62e-18!102;UBERON:0000924!3.62e-18!102;UBERON:0006601!3.62e-18!102;UBERON:0001017!9.19e-18!73;UBERON:0005743!9.19e-18!73;UBERON:0002020!3.12e-17!34;UBERON:0002791!3.41e-15!29;UBERON:0003528!3.41e-15!29;UBERON:0001893!3.41e-15!29;UBERON:0001049!3.58e-15!52;UBERON:0005068!3.58e-15!52;UBERON:0006241!3.58e-15!52;UBERON:0007135!3.58e-15!52;UBERON:0002346!1.01e-14!71;UBERON:0003075!1.01e-14!71;UBERON:0007284!1.01e-14!71;UBERON:0000955!4.29e-13!50;UBERON:0006238!4.29e-13!50;UBERON:0000033!8.85e-13!63;UBERON:0002616!1.24e-12!49;UBERON:0003080!1.28e-11!40;UBERON:0003056!2.10e-11!49;UBERON:0000956!2.27e-11!21;UBERON:0001869!2.27e-11!21;UBERON:0000203!2.27e-11!21;UBERON:0002780!2.29e-11!39;UBERON:0001890!2.29e-11!39;UBERON:0006240!2.29e-11!39;UBERON:0002619!3.04e-09!17;UBERON:0007811!1.79e-07!86;UBERON:0002021!2.01e-07!10;UBERON:0000411!2.01e-07!10;UBERON:0001950!2.01e-07!10;UBERON:0000153!4.74e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.49e-20,75;UBERON:0001017,3.60e-19,73;UBERON:0004121,5.63e-19,95;UBERON:0000924,5.63e-19,95;UBERON:0006601,5.63e-19,95;UBERON:0002020,2.12e-18,34;UBERON:0003528,3.29e-16,29;UBERON:0002791,3.29e-16,29;UBERON:0001893,3.29e-16,29;UBERON:0001049,5.26e-16,52;UBERON:0005068,5.26e-16,52;UBERON:0006241,5.26e-16,52;UBERON:0007135,5.26e-16,52;UBERON:0000073,8.66e-16,54;UBERON:0002346,1.03e-15,64;UBERON:0003075,1.03e-15,64;UBERON:0007284,1.03e-15,64;UBERON:0010371,1.28e-15,73;UBERON:0000955,3.58e-14,47;UBERON:0006238,3.58e-14,47;UBERON:0002616,1.14e-13,46;UBERON:0003080,1.67e-12,40;UBERON:0002780,3.11e-12,39;UBERON:0001890,3.11e-12,39;UBERON:0006240,3.11e-12,39;UBERON:0000956,4.24e-12,21;UBERON:0001869,4.24e-12,21;UBERON:0000203,4.24e-12,21;UBERON:0003056,9.43e-12,49;UBERON:0010314,6.07e-11,92;UBERON:0002619,8.14e-10,17;UBERON:0002021,7.31e-08,10;UBERON:0000411,7.31e-08,10;UBERON:0001950,7.31e-08,10 | |||
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| ||
|short_description=p3@Acap3 | |short_description=p3@Acap3 | ||
}} | }} |
Latest revision as of 20:22, 26 September 2015
Short description: | p3@Acap3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Acap3_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENSMUST00000137726_5end |
EntrezGene: | Acap3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.03e-10 | 44 |
neurectodermal cell | 1.03e-10 | 44 |
neural cell | 1.04e-10 | 43 |
electrically responsive cell | 7.08e-10 | 39 |
electrically active cell | 7.08e-10 | 39 |
CNS neuron (sensu Vertebrata) | 1.43e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.43e-09 | 23 |
neuron | 1.49e-09 | 33 |
neuronal stem cell | 1.49e-09 | 33 |
neuroblast | 1.49e-09 | 33 |
electrically signaling cell | 1.49e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.49e-20 | 75 |
central nervous system | 3.60e-19 | 73 |
ectoderm-derived structure | 5.63e-19 | 95 |
ectoderm | 5.63e-19 | 95 |
presumptive ectoderm | 5.63e-19 | 95 |
gray matter | 2.12e-18 | 34 |
brain grey matter | 3.29e-16 | 29 |
regional part of telencephalon | 3.29e-16 | 29 |
telencephalon | 3.29e-16 | 29 |
neural tube | 5.26e-16 | 52 |
neural rod | 5.26e-16 | 52 |
future spinal cord | 5.26e-16 | 52 |
neural keel | 5.26e-16 | 52 |
regional part of nervous system | 8.66e-16 | 54 |
neurectoderm | 1.03e-15 | 64 |
neural plate | 1.03e-15 | 64 |
presumptive neural plate | 1.03e-15 | 64 |
ecto-epithelium | 1.28e-15 | 73 |
brain | 3.58e-14 | 47 |
future brain | 3.58e-14 | 47 |
regional part of brain | 1.14e-13 | 46 |
anterior neural tube | 1.67e-12 | 40 |
regional part of forebrain | 3.11e-12 | 39 |
forebrain | 3.11e-12 | 39 |
future forebrain | 3.11e-12 | 39 |
cerebral cortex | 4.24e-12 | 21 |
cerebral hemisphere | 4.24e-12 | 21 |
pallium | 4.24e-12 | 21 |
pre-chordal neural plate | 9.43e-12 | 49 |
structure with developmental contribution from neural crest | 6.07e-11 | 92 |
regional part of cerebral cortex | 8.14e-10 | 17 |
occipital lobe | 7.31e-08 | 10 |
visual cortex | 7.31e-08 | 10 |
neocortex | 7.31e-08 | 10 |