FFCP PHASE1:Mm9::chr11:120582766..120582850,+: Difference between revisions
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{{FFCP|EntrezGene=170758|HGNC=|MCL_coexpression_id=87|UniProt=P60764,Q14A12,P63001|association_with_transcript=0bp_to_ENSMUST00000018156,NM_133223,uc007mug.1_5end|description=CAGE_peak_1_at_Rac3_5end|id=chr11:120582766..120582850,+|ontology_enrichment_celltype=CL:0000117!8.22e-15!23;CL:0000337!8.22e-15!23;CL:0000221!8.93e-15!44;CL:0000133!8.93e-15!44;CL:0002319!1.21e-14!43;CL:0000540!2.77e-12!33;CL:0000047!2.77e-12!33;CL:0000031!2.77e-12!33;CL:0000404!2.77e-12!33;CL:0000055!4.52e-12!50;CL:0000393!3.04e-10!39;CL:0000211!3.04e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.24e-15,23;CL:0000337,5.24e-15,23;CL:0000221,5.69e-15,44;CL:0000133,5.69e-15,44;CL:0002319,7.75e-15,43;CL:0000540,1.92e-12,33;CL:0000047,1.92e-12,33;CL:0000031,1.92e-12,33;CL:0000404,1.92e-12,33;CL:0000393,2.26e-10,39;CL:0000211,2.26e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.13e-19!73;UBERON:0005743!8.13e-19!73;UBERON:0000073!8.39e-18!75;UBERON:0001016!8.39e-18!75;UBERON:0004121!8.33e-17!102;UBERON:0000924!8.33e-17!102;UBERON:0006601!8.33e-17!102;UBERON:0001049!1.43e-14!52;UBERON:0005068!1.43e-14!52;UBERON:0006241!1.43e-14!52;UBERON:0007135!1.43e-14!52;UBERON:0002020!1.20e-13!34;UBERON:0002346!5.33e-13!71;UBERON:0003075!5.33e-13!71;UBERON:0007284!5.33e-13!71;UBERON:0000033!1.06e-12!63;UBERON:0002616!1.80e-12!49;UBERON:0000955!2.74e-12!50;UBERON:0006238!2.74e-12!50;UBERON:0003080!1.62e-11!40;UBERON:0002780!2.32e-11!39;UBERON:0001890!2.32e-11!39;UBERON:0006240!2.32e-11!39;UBERON:0003056!3.19e-11!49;UBERON:0002791!2.15e-10!29;UBERON:0003528!2.15e-10!29;UBERON:0001893!2.15e-10!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.51e-19,73;UBERON:0001016,4.82e-18,75;UBERON:0004121,6.45e-18,95;UBERON:0000924,6.45e-18,95;UBERON:0006601,6.45e-18,95;UBERON:0000073,7.85e-16,54;UBERON:0001049,9.15e-15,52;UBERON:0005068,9.15e-15,52;UBERON:0006241,9.15e-15,52;UBERON:0007135,9.15e-15,52;UBERON:0002346,2.67e-14,64;UBERON:0003075,2.67e-14,64;UBERON:0007284,2.67e-14,64;UBERON:0010371,5.55e-14,73;UBERON:0002020,7.96e-14,34;UBERON:0003080,1.16e-11,40;UBERON:0002616,1.52e-11,46;UBERON:0002780,1.66e-11,39;UBERON:0001890,1.66e-11,39;UBERON:0006240,1.66e-11,39;UBERON:0003056,2.29e-11,49;UBERON:0000955,2.31e-11,47;UBERON:0006238,2.31e-11,47;UBERON:0003528,1.59e-10,29;UBERON:0002791,1.59e-10,29;UBERON:0001893,1.59e-10,29;UBERON:0010314,2.50e-07,92|phase1_expression=16.335182404689,1.04692622291808,0.454999239389536,1.51232105653415,0.500895729946347,0.839396359559449,2.80335168714631,0,0,0.468129052643987,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0,0,0,3.82694805679814,0,0,1.27993938234725,2.06468352960453,0.57423196411502,2.15380998079537,1.07735616342945,3.6104449696711,2.52030129759931,1.99557459589774,0,0,15.8481681015439,0.866554859253824,0.498703936075477,0,0,0,0,0,0,0,3.52511090331616,2.02753862439029,3.12029478674859,43.8139152834902,10.6832326626419,19.9914426288369,15.5543919259427,32.7568226603348,20.125359011096,0,0,0,1.80081605225163,6.01720223871389,6.70373719960675,146.881750584068,135.42169069364,222.474822630669,50.8266798103698,44.464739805557,35.5460388326153,36.5880554149781,29.8401648277362,26.664409836138,39.5744854481201,33.3880551633298,42.5268705744826,38.4894679273029,215.952144209276,167.197485500371,58.0606388278882,32.8749965592551,82.7296907949019,20.9220173898839,14.8117312178818,14.7462271925994,142.173418173149,127.716750468964,137.000216456428,36.0146068711781,32.0774687718058,21.0861581931998,173.241608258517,134.114123312755,144.645969960433,1.28734528666413,1.88928900266964,1.15945795480671,0.860423876981386,0,2.15881276655127,0,0,1.82577746171277,5.62420064507591,15.0675882669664,13.7802434059033,10.4224130634744,0,0,0,21.216122019099,23.5624674891842,27.8038444758131,1.1418387971906,0.258937883647172,2.07818994690755,5.89850111004862,7.00270600117925,6.22661842591358,6.78251882486802,3.17489509266403,1.75933227861546,14.5845030963281,0.433798070759735,0.884610551949874,2.26473589926373,0.883366073841574,1.93950101254089,5.59175283654366,3.51336956413857,2.72280718857492,0.766371165625774,0,0,0,10.7849260371472,8.23501085073528,107.937088464951,7.99591872884472,8.18289463457058,12.4672826735736,6.97637431191358,5.49932564791708,2.98576729464223,4.29628689337247,1.05220927943237,7.54698569183682,12.8745178482745,15.48534316326,8.89158425230719,6.05524842446818,7.68682321709099,9.93238280333126,1.29351685369508,10.5628316537093,9.64441008855878,9.67731182901719,15.7820927347854,8.06337022754234,6.268538997399,7.40815691068596,7.56330213910274,0,0,0,1.24275463521301,2.34526059981096,3.6012412292203,1.89395788468168,0.393528463494808,1.07986979021165,0.697601834251224,2.95100741539581,0.350296027101508,0.493679549740441,1.64167464079095,0.648550476366846,0.584799949701329,0.658650345873152,0.939444931322602,6.30869845692382,70.6954687045684,0,0,5.54549451391608,7.43157349953403,5.15469845288373,4.63872106633688,4.00280478920767,5.1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=170758 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=P60764,Q14A12,P63001 | |||
|association_with_transcript=0bp_to_ENSMUST00000018156,NM_133223,uc007mug.1_5end | |||
|cluster_id=chr11:120582766..120582850,+ | |||
|description=CAGE_peak_1_at_Rac3_5end | |||
|id=chr11:120582766..120582850,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.22e-15!23;CL:0000337!8.22e-15!23;CL:0000221!8.93e-15!44;CL:0000133!8.93e-15!44;CL:0002319!1.21e-14!43;CL:0000540!2.77e-12!33;CL:0000047!2.77e-12!33;CL:0000031!2.77e-12!33;CL:0000404!2.77e-12!33;CL:0000055!4.52e-12!50;CL:0000393!3.04e-10!39;CL:0000211!3.04e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.24e-15,23;CL:0000337,5.24e-15,23;CL:0000221,5.69e-15,44;CL:0000133,5.69e-15,44;CL:0002319,7.75e-15,43;CL:0000540,1.92e-12,33;CL:0000047,1.92e-12,33;CL:0000031,1.92e-12,33;CL:0000404,1.92e-12,33;CL:0000393,2.26e-10,39;CL:0000211,2.26e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.13e-19!73;UBERON:0005743!8.13e-19!73;UBERON:0000073!8.39e-18!75;UBERON:0001016!8.39e-18!75;UBERON:0004121!8.33e-17!102;UBERON:0000924!8.33e-17!102;UBERON:0006601!8.33e-17!102;UBERON:0001049!1.43e-14!52;UBERON:0005068!1.43e-14!52;UBERON:0006241!1.43e-14!52;UBERON:0007135!1.43e-14!52;UBERON:0002020!1.20e-13!34;UBERON:0002346!5.33e-13!71;UBERON:0003075!5.33e-13!71;UBERON:0007284!5.33e-13!71;UBERON:0000033!1.06e-12!63;UBERON:0002616!1.80e-12!49;UBERON:0000955!2.74e-12!50;UBERON:0006238!2.74e-12!50;UBERON:0003080!1.62e-11!40;UBERON:0002780!2.32e-11!39;UBERON:0001890!2.32e-11!39;UBERON:0006240!2.32e-11!39;UBERON:0003056!3.19e-11!49;UBERON:0002791!2.15e-10!29;UBERON:0003528!2.15e-10!29;UBERON:0001893!2.15e-10!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.51e-19,73;UBERON:0001016,4.82e-18,75;UBERON:0004121,6.45e-18,95;UBERON:0000924,6.45e-18,95;UBERON:0006601,6.45e-18,95;UBERON:0000073,7.85e-16,54;UBERON:0001049,9.15e-15,52;UBERON:0005068,9.15e-15,52;UBERON:0006241,9.15e-15,52;UBERON:0007135,9.15e-15,52;UBERON:0002346,2.67e-14,64;UBERON:0003075,2.67e-14,64;UBERON:0007284,2.67e-14,64;UBERON:0010371,5.55e-14,73;UBERON:0002020,7.96e-14,34;UBERON:0003080,1.16e-11,40;UBERON:0002616,1.52e-11,46;UBERON:0002780,1.66e-11,39;UBERON:0001890,1.66e-11,39;UBERON:0006240,1.66e-11,39;UBERON:0003056,2.29e-11,49;UBERON:0000955,2.31e-11,47;UBERON:0006238,2.31e-11,47;UBERON:0003528,1.59e-10,29;UBERON:0002791,1.59e-10,29;UBERON:0001893,1.59e-10,29;UBERON:0010314,2.50e-07,92 | |||
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| |||
|short_description=p1@Rac3 | |||
}} |
Latest revision as of 03:18, 27 September 2015
Short description: | p1@Rac3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rac3_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000018156, NM_133223, uc007mug.1_5end |
EntrezGene: | Rac3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.24e-15 | 23 |
neuroblast (sensu Vertebrata) | 5.24e-15 | 23 |
ectodermal cell | 5.69e-15 | 44 |
neurectodermal cell | 5.69e-15 | 44 |
neural cell | 7.75e-15 | 43 |
neuron | 1.92e-12 | 33 |
neuronal stem cell | 1.92e-12 | 33 |
neuroblast | 1.92e-12 | 33 |
electrically signaling cell | 1.92e-12 | 33 |
electrically responsive cell | 2.26e-10 | 39 |
electrically active cell | 2.26e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.51e-19 | 73 |
nervous system | 4.82e-18 | 75 |
ectoderm-derived structure | 6.45e-18 | 95 |
ectoderm | 6.45e-18 | 95 |
presumptive ectoderm | 6.45e-18 | 95 |
regional part of nervous system | 7.85e-16 | 54 |
neural tube | 9.15e-15 | 52 |
neural rod | 9.15e-15 | 52 |
future spinal cord | 9.15e-15 | 52 |
neural keel | 9.15e-15 | 52 |
neurectoderm | 2.67e-14 | 64 |
neural plate | 2.67e-14 | 64 |
presumptive neural plate | 2.67e-14 | 64 |
ecto-epithelium | 5.55e-14 | 73 |
gray matter | 7.96e-14 | 34 |
anterior neural tube | 1.16e-11 | 40 |
regional part of brain | 1.52e-11 | 46 |
regional part of forebrain | 1.66e-11 | 39 |
forebrain | 1.66e-11 | 39 |
future forebrain | 1.66e-11 | 39 |
pre-chordal neural plate | 2.29e-11 | 49 |
brain | 2.31e-11 | 47 |
future brain | 2.31e-11 | 47 |
brain grey matter | 1.59e-10 | 29 |
regional part of telencephalon | 1.59e-10 | 29 |
telencephalon | 1.59e-10 | 29 |
structure with developmental contribution from neural crest | 2.50e-07 | 92 |