FFCP PHASE1:Mm9::chr11:120582857..120582878,+: Difference between revisions
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{{FFCP|EntrezGene=170758|HGNC=|MCL_coexpression_id=87|UniProt=A2AC13|association_with_transcript=-8bp_to_ENSMUST00000142229_5end|description=CAGE_peak_2_at_Rac3_5end|id=chr11:120582857..120582878,+|ontology_enrichment_celltype=CL:0000221!7.59e-16!44;CL:0000133!7.59e-16!44;CL:0002319!1.35e-15!43;CL:0000117!2.79e-15!23;CL:0000337!2.79e-15!23;CL:0000540!4.42e-13!33;CL:0000047!4.42e-13!33;CL:0000031!4.42e-13!33;CL:0000404!4.42e-13!33;CL:0000055!2.07e-12!50;CL:0000393!1.21e-10!39;CL:0000211!1.21e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,7.90e-17,23;CL:0000337,7.90e-17,23;CL:0000221,5.78e-16,44;CL:0000133,5.78e-16,44;CL:0002319,1.10e-15,43;CL:0000540,2.73e-13,33;CL:0000047,2.73e-13,33;CL:0000031,2.73e-13,33;CL:0000404,2.73e-13,33;CL:0000393,1.92e-10,39;CL:0000211,1.92e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.67e-26!73;UBERON:0005743!7.67e-26!73;UBERON:0000073!3.15e-25!75;UBERON:0001016!3.15e-25!75;UBERON:0004121!4.41e-24!102;UBERON:0000924!4.41e-24!102;UBERON:0006601!4.41e-24!102;UBERON:0001049!2.00e-20!52;UBERON:0005068!2.00e-20!52;UBERON:0006241!2.00e-20!52;UBERON:0007135!2.00e-20!52;UBERON:0002346!1.05e-19!71;UBERON:0003075!1.05e-19!71;UBERON:0007284!1.05e-19!71;UBERON:0000033!3.35e-19!63;UBERON:0000955!8.98e-19!50;UBERON:0006238!8.98e-19!50;UBERON:0002616!1.25e-18!49;UBERON:0002020!9.38e-17!34;UBERON:0003056!2.16e-16!49;UBERON:0003080!9.95e-16!40;UBERON:0002780!3.55e-15!39;UBERON:0001890!3.55e-15!39;UBERON:0006240!3.55e-15!39;UBERON:0002791!2.78e-13!29;UBERON:0003528!2.78e-13!29;UBERON:0001893!2.78e-13!29;UBERON:0000956!5.62e-09!21;UBERON:0001869!5.62e-09!21;UBERON:0000203!5.62e-09!21;UBERON:0000153!9.54e-09!94;UBERON:0007811!1.86e-08!86;UBERON:0002619!1.30e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.88e-27,73;UBERON:0001016,2.37e-26,75;UBERON:0004121,9.37e-25,95;UBERON:0000924,9.37e-25,95;UBERON:0006601,9.37e-25,95;UBERON:0000073,1.45e-24,54;UBERON:0001049,1.47e-22,52;UBERON:0005068,1.47e-22,52;UBERON:0006241,1.47e-22,52;UBERON:0007135,1.47e-22,52;UBERON:0002346,2.26e-22,64;UBERON:0003075,2.26e-22,64;UBERON:0007284,2.26e-22,64;UBERON:0010371,8.43e-21,73;UBERON:0000955,9.51e-19,47;UBERON:0006238,9.51e-19,47;UBERON:0002616,1.37e-18,46;UBERON:0002020,1.81e-18,34;UBERON:0003056,7.12e-18,49;UBERON:0003080,2.51e-17,40;UBERON:0002780,1.03e-16,39;UBERON:0001890,1.03e-16,39;UBERON:0006240,1.03e-16,39;UBERON:0003528,1.33e-14,29;UBERON:0002791,1.33e-14,29;UBERON:0001893,1.33e-14,29;UBERON:0010314,1.51e-11,92;UBERON:0000956,8.18e-10,21;UBERON:0001869,8.18e-10,21;UBERON:0000203,8.18e-10,21;UBERON:0002619,2.68e-08,17|phase1_expression=5.12476310735341,0,0,0,0.500895729946347,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0.159992422793407,0.68822784320151,0.57423196411502,0,0.215471232685889,0.760093677825496,0.252030129759931,0.665191531965914,0,0,15.8481681015439,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.811015449756117,1.28482726513177,12.5182615095686,3.2703773457067,4.83309602015838,5.24960727500565,5.5994568650145,11.5002051491977,0,0,0,0,1.14613375975503,1.54701627683233,54.827760892951,68.2398363260922,76.6935998242477,5.42151251310611,6.22506357277798,5.39939830368839,6.92206453796882,6.3943210345149,7.19040265244171,6.53171119046643,5.08079100311541,9.99043943654511,7.99234853135252,76.5544638202194,61.4014543845486,10.1667363348412,8.14686503655009,14.7075005857603,17.6185409599022,9.95961237064464,8.75557239560588,58.5575117522061,65.5051528193253,48.4449434617787,15.6342479440773,21.9477417912355,11.7654650788144,71.0054890991539,59.3689908932259,63.9350099180781,0.832988126665025,1.058001841495,0.289864488701678,0,0,0,0,0,0.280888840263504,2.21559419351475,1.81850203222008,1.41335829804136,4.64783285263046,0,0,0,1.73192832808971,2.02687892380079,0.505524445014783,0.11418387971906,0,0.593768556259299,2.60227990149204,1.52232739156071,1.38369298353635,3.01445281105245,0.940709657085638,0.502666365318702,3.70792451601561,0.289198713839823,0,0.161766849947409,0.220841518460394,0,0,3.80615036115011,1.04723353406728,0,0,0,0,9.13722900369418,2.28750301409313,22.6177833803156,3.12883776346098,2.04572365864264,7.89594569326328,3.40706652442291,1.83310854930569,0.373220911830279,0.252722758433675,0.420883711772948,2.34216797332867,5.51765050640335,5.76198815377118,4.06903008156431,3.33378845841506,2.562274405697,4.49768277886698,1.29351685369508,3.23351989399263,2.64748512234947,2.81521798662318,4.82230611340665,1.39023624612799,1.39300866608867,2.05782136407943,2.18937693500343,0,0,0,0,0.703578179943289,0.540186184383045,0.473489471170421,0.393528463494808,0,0.465067889500816,0.268273401399619,0.116765342367169,0.16455984991348,0.164167464079095,0,0,0,0.134206418760372,2.3131894342054,22.1244916615462,0.330418782983798,0,1.49301775374664,0.928946687441754,1.9330119198314,0.80673409849337,0.667134131534611,1.90225626112559,0.949058123089023,0.988193728344065,0.50267041760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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=170758 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=A2AC13 | |||
|association_with_transcript=-8bp_to_ENSMUST00000142229_5end | |||
|cluster_id=chr11:120582857..120582878,+ | |||
|description=CAGE_peak_2_at_Rac3_5end | |||
|id=chr11:120582857..120582878,+ | |||
|ontology_enrichment_celltype=CL:0000221!7.59e-16!44;CL:0000133!7.59e-16!44;CL:0002319!1.35e-15!43;CL:0000117!2.79e-15!23;CL:0000337!2.79e-15!23;CL:0000540!4.42e-13!33;CL:0000047!4.42e-13!33;CL:0000031!4.42e-13!33;CL:0000404!4.42e-13!33;CL:0000055!2.07e-12!50;CL:0000393!1.21e-10!39;CL:0000211!1.21e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.90e-17,23;CL:0000337,7.90e-17,23;CL:0000221,5.78e-16,44;CL:0000133,5.78e-16,44;CL:0002319,1.10e-15,43;CL:0000540,2.73e-13,33;CL:0000047,2.73e-13,33;CL:0000031,2.73e-13,33;CL:0000404,2.73e-13,33;CL:0000393,1.92e-10,39;CL:0000211,1.92e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.67e-26!73;UBERON:0005743!7.67e-26!73;UBERON:0000073!3.15e-25!75;UBERON:0001016!3.15e-25!75;UBERON:0004121!4.41e-24!102;UBERON:0000924!4.41e-24!102;UBERON:0006601!4.41e-24!102;UBERON:0001049!2.00e-20!52;UBERON:0005068!2.00e-20!52;UBERON:0006241!2.00e-20!52;UBERON:0007135!2.00e-20!52;UBERON:0002346!1.05e-19!71;UBERON:0003075!1.05e-19!71;UBERON:0007284!1.05e-19!71;UBERON:0000033!3.35e-19!63;UBERON:0000955!8.98e-19!50;UBERON:0006238!8.98e-19!50;UBERON:0002616!1.25e-18!49;UBERON:0002020!9.38e-17!34;UBERON:0003056!2.16e-16!49;UBERON:0003080!9.95e-16!40;UBERON:0002780!3.55e-15!39;UBERON:0001890!3.55e-15!39;UBERON:0006240!3.55e-15!39;UBERON:0002791!2.78e-13!29;UBERON:0003528!2.78e-13!29;UBERON:0001893!2.78e-13!29;UBERON:0000956!5.62e-09!21;UBERON:0001869!5.62e-09!21;UBERON:0000203!5.62e-09!21;UBERON:0000153!9.54e-09!94;UBERON:0007811!1.86e-08!86;UBERON:0002619!1.30e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.88e-27,73;UBERON:0001016,2.37e-26,75;UBERON:0004121,9.37e-25,95;UBERON:0000924,9.37e-25,95;UBERON:0006601,9.37e-25,95;UBERON:0000073,1.45e-24,54;UBERON:0001049,1.47e-22,52;UBERON:0005068,1.47e-22,52;UBERON:0006241,1.47e-22,52;UBERON:0007135,1.47e-22,52;UBERON:0002346,2.26e-22,64;UBERON:0003075,2.26e-22,64;UBERON:0007284,2.26e-22,64;UBERON:0010371,8.43e-21,73;UBERON:0000955,9.51e-19,47;UBERON:0006238,9.51e-19,47;UBERON:0002616,1.37e-18,46;UBERON:0002020,1.81e-18,34;UBERON:0003056,7.12e-18,49;UBERON:0003080,2.51e-17,40;UBERON:0002780,1.03e-16,39;UBERON:0001890,1.03e-16,39;UBERON:0006240,1.03e-16,39;UBERON:0003528,1.33e-14,29;UBERON:0002791,1.33e-14,29;UBERON:0001893,1.33e-14,29;UBERON:0010314,1.51e-11,92;UBERON:0000956,8.18e-10,21;UBERON:0001869,8.18e-10,21;UBERON:0000203,8.18e-10,21;UBERON:0002619,2.68e-08,17 | |||
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| |||
|short_description=p2@Rac3 | |||
}} |
Latest revision as of 03:19, 27 September 2015
Short description: | p2@Rac3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rac3_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -8bp_to_ENSMUST00000142229_5end |
EntrezGene: | Rac3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.90e-17 | 23 |
neuroblast (sensu Vertebrata) | 7.90e-17 | 23 |
ectodermal cell | 5.78e-16 | 44 |
neurectodermal cell | 5.78e-16 | 44 |
neural cell | 1.10e-15 | 43 |
neuron | 2.73e-13 | 33 |
neuronal stem cell | 2.73e-13 | 33 |
neuroblast | 2.73e-13 | 33 |
electrically signaling cell | 2.73e-13 | 33 |
electrically responsive cell | 1.92e-10 | 39 |
electrically active cell | 1.92e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.88e-27 | 73 |
nervous system | 2.37e-26 | 75 |
ectoderm-derived structure | 9.37e-25 | 95 |
ectoderm | 9.37e-25 | 95 |
presumptive ectoderm | 9.37e-25 | 95 |
regional part of nervous system | 1.45e-24 | 54 |
neural tube | 1.47e-22 | 52 |
neural rod | 1.47e-22 | 52 |
future spinal cord | 1.47e-22 | 52 |
neural keel | 1.47e-22 | 52 |
neurectoderm | 2.26e-22 | 64 |
neural plate | 2.26e-22 | 64 |
presumptive neural plate | 2.26e-22 | 64 |
ecto-epithelium | 8.43e-21 | 73 |
brain | 9.51e-19 | 47 |
future brain | 9.51e-19 | 47 |
regional part of brain | 1.37e-18 | 46 |
gray matter | 1.81e-18 | 34 |
pre-chordal neural plate | 7.12e-18 | 49 |
anterior neural tube | 2.51e-17 | 40 |
regional part of forebrain | 1.03e-16 | 39 |
forebrain | 1.03e-16 | 39 |
future forebrain | 1.03e-16 | 39 |
brain grey matter | 1.33e-14 | 29 |
regional part of telencephalon | 1.33e-14 | 29 |
telencephalon | 1.33e-14 | 29 |
structure with developmental contribution from neural crest | 1.51e-11 | 92 |
cerebral cortex | 8.18e-10 | 21 |
cerebral hemisphere | 8.18e-10 | 21 |
pallium | 8.18e-10 | 21 |
regional part of cerebral cortex | 2.68e-08 | 17 |