FFCP PHASE1:Mm9::chr1:50984355..50984387,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56363 | |EntrezGene=56363 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=826 | |MCL_coexpression_id=826 | ||
|TSSclassifier=NA | |||
|UniProt=Q9QYM9 | |UniProt=Q9QYM9 | ||
|association_with_transcript=0bp_to_ENSMUST00000081851,NM_019790,uc007axj.1_5end | |association_with_transcript=0bp_to_ENSMUST00000081851,NM_019790,uc007axj.1_5end | ||
|cluster_id=chr1:50984355..50984387,+ | |||
|description=CAGE_peak_1_at_Tmeff2_5end | |description=CAGE_peak_1_at_Tmeff2_5end | ||
|id=chr1:50984355..50984387,+ | |id=chr1:50984355..50984387,+ | ||
|ontology_enrichment_celltype=CL:0002319!6.96e-17!43;CL:0000221!9.59e-17!44;CL:0000133!9.59e-17!44;CL:0000540!1.49e-15!33;CL:0000047!1.49e-15!33;CL:0000031!1.49e-15!33;CL:0000404!1.49e-15!33;CL:0000055!1.56e-14!50;CL:0000393!7.60e-14!39;CL:0000211!7.60e-14!39;CL:0000117!9.78e-11!23;CL:0000337!9.78e-11!23 | |ontology_enrichment_celltype=CL:0002319!6.96e-17!43;CL:0000221!9.59e-17!44;CL:0000133!9.59e-17!44;CL:0000540!1.49e-15!33;CL:0000047!1.49e-15!33;CL:0000031!1.49e-15!33;CL:0000404!1.49e-15!33;CL:0000055!1.56e-14!50;CL:0000393!7.60e-14!39;CL:0000211!7.60e-14!39;CL:0000117!9.78e-11!23;CL:0000337!9.78e-11!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.23e-17,43;CL:0000221,4.48e-17,44;CL:0000133,4.48e-17,44;CL:0000540,7.39e-16,33;CL:0000047,7.39e-16,33;CL:0000031,7.39e-16,33;CL:0000404,7.39e-16,33;CL:0000393,5.51e-14,39;CL:0000211,5.51e-14,39;CL:0000117,6.18e-11,23;CL:0000337,6.18e-11,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.71e-33!102;UBERON:0000924!1.71e-33!102;UBERON:0006601!1.71e-33!102;UBERON:0001017!4.86e-33!73;UBERON:0005743!4.86e-33!73;UBERON:0000073!2.61e-32!75;UBERON:0001016!2.61e-32!75;UBERON:0002346!2.19e-25!71;UBERON:0003075!2.19e-25!71;UBERON:0007284!2.19e-25!71;UBERON:0001049!5.84e-22!52;UBERON:0005068!5.84e-22!52;UBERON:0006241!5.84e-22!52;UBERON:0007135!5.84e-22!52;UBERON:0000955!8.04e-21!50;UBERON:0006238!8.04e-21!50;UBERON:0000033!1.17e-20!63;UBERON:0002616!3.22e-20!49;UBERON:0002020!6.86e-16!34;UBERON:0003056!1.56e-15!49;UBERON:0003080!7.44e-15!40;UBERON:0002780!2.79e-14!39;UBERON:0001890!2.79e-14!39;UBERON:0006240!2.79e-14!39;UBERON:0002791!7.79e-13!29;UBERON:0003528!7.79e-13!29;UBERON:0001893!7.79e-13!29;UBERON:0000153!2.48e-09!94;UBERON:0000468!3.49e-09!333;UBERON:0007811!6.98e-09!86;UBERON:0002619!1.01e-08!17;UBERON:0000956!1.21e-08!21;UBERON:0001869!1.21e-08!21;UBERON:0000203!1.21e-08!21;UBERON:0003076!5.48e-08!12;UBERON:0003057!5.48e-08!12 | |ontology_enrichment_uberon=UBERON:0004121!1.71e-33!102;UBERON:0000924!1.71e-33!102;UBERON:0006601!1.71e-33!102;UBERON:0001017!4.86e-33!73;UBERON:0005743!4.86e-33!73;UBERON:0000073!2.61e-32!75;UBERON:0001016!2.61e-32!75;UBERON:0002346!2.19e-25!71;UBERON:0003075!2.19e-25!71;UBERON:0007284!2.19e-25!71;UBERON:0001049!5.84e-22!52;UBERON:0005068!5.84e-22!52;UBERON:0006241!5.84e-22!52;UBERON:0007135!5.84e-22!52;UBERON:0000955!8.04e-21!50;UBERON:0006238!8.04e-21!50;UBERON:0000033!1.17e-20!63;UBERON:0002616!3.22e-20!49;UBERON:0002020!6.86e-16!34;UBERON:0003056!1.56e-15!49;UBERON:0003080!7.44e-15!40;UBERON:0002780!2.79e-14!39;UBERON:0001890!2.79e-14!39;UBERON:0006240!2.79e-14!39;UBERON:0002791!7.79e-13!29;UBERON:0003528!7.79e-13!29;UBERON:0001893!7.79e-13!29;UBERON:0000153!2.48e-09!94;UBERON:0000468!3.49e-09!333;UBERON:0007811!6.98e-09!86;UBERON:0002619!1.01e-08!17;UBERON:0000956!1.21e-08!21;UBERON:0001869!1.21e-08!21;UBERON:0000203!1.21e-08!21;UBERON:0003076!5.48e-08!12;UBERON:0003057!5.48e-08!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.96e-34,73;UBERON:0004121,5.51e-33,95;UBERON:0000924,5.51e-33,95;UBERON:0006601,5.51e-33,95;UBERON:0001016,5.56e-33,75;UBERON:0010371,2.63e-25,73;UBERON:0002346,4.70e-25,64;UBERON:0003075,4.70e-25,64;UBERON:0007284,4.70e-25,64;UBERON:0000073,5.52e-24,54;UBERON:0001049,2.10e-22,52;UBERON:0005068,2.10e-22,52;UBERON:0006241,2.10e-22,52;UBERON:0007135,2.10e-22,52;UBERON:0000955,5.13e-19,47;UBERON:0006238,5.13e-19,47;UBERON:0002616,2.04e-18,46;UBERON:0010314,5.54e-17,92;UBERON:0002020,3.35e-16,34;UBERON:0003056,7.75e-16,49;UBERON:0003080,3.82e-15,40;UBERON:0002780,1.48e-14,39;UBERON:0001890,1.48e-14,39;UBERON:0006240,1.48e-14,39;UBERON:0003528,4.43e-13,29;UBERON:0002791,4.43e-13,29;UBERON:0001893,4.43e-13,29;UBERON:0002619,7.05e-09,17;UBERON:0000956,8.51e-09,21;UBERON:0001869,8.51e-09,21;UBERON:0000203,8.51e-09,21;UBERON:0003076,3.97e-08,12;UBERON:0003057,3.97e-08,12 | |||
|phase1_expression=6.40595388419176,0.697950815278722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.3253463461057,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.7116490422362,33.6571411648788,2.75320128242522,22.6893489860931,25.2909181401318,36.4679063339223,25.8591765768797,11.3389001516544,2.87505128729943,0,0,0,0,0.573066879877513,4.64104883049698,58.874090110143,65.5948814297321,51.9741750875067,3.38844532069132,5.33576877666684,0,0,0,26.9640099466564,36.5007390055477,5.18448061542388,6.21027316325777,5.46844899513593,113.40344080831,82.6048343159035,22.5383070555515,16.0061936600455,18.3843757322004,142.049486489211,128.198087437528,114.744080342414,45.3688829791867,32.8440640532651,42.1939830150976,117.536042579581,102.422795025766,128.197729884744,82.2013753471533,71.897698803547,88.9125356586684,1.66597625333005,5.89458168832927,10.7249860819621,0,0,0,0,0,4.91555470461132,0.511290967734173,0.519572009205738,0,6.19711047017394,0,0,0,0,0.253359865475099,0,2.39786147410026,1.03575153458869,17.2192881315197,10.4091196059682,13.0920155674221,12.9144678463393,13.8664829308413,13.9930561491489,8.41966161908826,0,9.54355755671417,0.884610551949874,18.2796540440572,4.41683036920787,1.93950101254089,0,58.848940199321,91.5282108774799,0,0.11981512450592,0,0,78.3405044087223,69.0825910256126,39.0785035071008,76.8303495249862,78.7603608577418,75.6348482196799,99.9406180497387,10.9986512958342,3.4833951770826,0.505445516867349,6.94458124425364,6.24578126220978,9.19608417733892,9.54329287968351,13.5634336052144,17.9616357759506,15.6298738747517,18.646643187386,18.6266426932091,1.5089759505299,11.9136830505726,15.3077478022636,17.9740500590611,10.0097009721215,13.2335823278423,12.5527103208846,3.38358253591438,0,0,0,0.828503090142008,1.87620847984877,1.98068267607116,1.18372367792605,1.37734962223183,1.69693824176116,0.930135779001631,1.87791380979733,1.28441876603886,0.987359099480883,2.29834449710733,1.4592385718254,1.60819986167866,1.97595103761946,1.61047702512446,84.1159794256509,31.0771929385439,0.330418782983798,0.528901133327089,7.46508876873319,12.5407802804637,7.86091514064769,8.67239155880373,5.11469500843202,5.1360919050391,0.949058123089023,5.43506550589236,3.01602250560323,0.994782360205754,2.72949721966768,1.79763881730844,0.432276099749388,0.597423819763102,3.03468641524931,5.1411830674378,1.1270773567308,4.48032921259691,2.32742984601151,3.29638353484497,0.885311519739602,0.885660887877613,0.784993639206874,0.493588655687202,0.296452627087149,0.667380422864376,1.17935397067922,1.34917267430912,1.01430060694251,1.92941727801933,1.01850340712568,0.863088412352432,1.13494658742525,2.74561413188081,0,0.744281895337007,0,0.252578877947112,0.179397413521912,0,11.0851914099963,3.41084541186873,1.62964976442026,2.20668611507745,1.40814148973101,2.01007508930179,1.90434912708811,2.34160377429359,3.94087860265477,3.98636441367795,4.62418829106713,3.11340297959902,6.90739927463582,4.91806799177139,0,0,3.44234991113325,6.89841865761831,82.0413514837617,120.610825503377,0,7.82659874333556,75.4064644404854,74.5738001606579,91.5549440364396,28.6762557543062,34.7565931568535,47.273780641735,97.9641898053244,118.07136659617,112.261728936813,76.4744733083901,6.95506417520516,9.79360820169904,10.9134262766896,4.45419332025846,2.65490276679926,1.45668381692989,2.72091201268276,1.50884063804718,4.42952839321159,4.91896236710284,10.0787034335606,6.5436071305951,12.83390562185,5.37262488490887,1.05418608574999,3.09406629744561,5.7874732978144,9.36317688962813,9.9606186512721,7.07312215604255,8.51233121482913,19.9773075714319,22.8723138636948,13.0919928119278,0,0,3.96951116498931,10.5527201882547,32.454349765877,15.6813604813205,10.0272768962635,6.40149509005739,1.7488850197791,100.871364293717,0,1.65109494370578,0.740778109478847,0,0,0,0,0,0,0,6.80122386199441,6.91286188231286,3.88819226958485,3.13632444021703,2.62035076495413,3.10187996685088,2.64491058321075,1.30877970992015,0.518459893167171,1.86401793926078,0,4.18646328923141,4.63283773279873,6.41688921535357,4.52059382172059,6.08242051766801,3.63807439801837,3.3853140059427,3.04092098834561,2.17425708743405,2.59227005632079,1.58005560314089,2.63542779877213,2.05421914329655,1.29920822977795,2.8644271306797,2.58285761215644,1.20195449519969,1.03382669022204,0.504832249740738,0.533447646584999,0.403304740547362,0.0974578807397524,0.192423683280659,0.467507608726276,4.53460767230423,0.221985953374065,0.269141569828427,0.335769232728157,8.88672132548076,1.12609485270709,1.64836461840539,14.3626813982974,0.501572104035363,72.2882358549845,69.5091107125837,72.7577302068034,80.0835829721584,65.7679218979817,61.9422995859554,80.3276775275849,77.4552469545659,63.4399372577886,49.7049899281747,3.21740777510948,21.9463680370567,23.7319711998246,20.4209642337367,9.22297915563122,10.2952364732008,21.7801793245583,21.2216108956061,20.859748623468,21.7319602116866,17.2365923925363,19.2398868213798,22.4739617927718,22.0886775796799,24.6972516509137,21.4332161077383,21.438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| ||
|short_description=p1@Tmeff2 | |short_description=p1@Tmeff2 | ||
}} | }} |
Latest revision as of 04:47, 27 September 2015
Short description: | p1@Tmeff2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tmeff2_5end |
Coexpression cluster: | MCL_coexpression_mm9:826 |
Association with transcript: | 0bp_to_ENSMUST00000081851, NM_019790, uc007axj.1_5end |
EntrezGene: | Tmeff2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.23e-17 | 43 |
ectodermal cell | 4.48e-17 | 44 |
neurectodermal cell | 4.48e-17 | 44 |
neuron | 7.39e-16 | 33 |
neuronal stem cell | 7.39e-16 | 33 |
neuroblast | 7.39e-16 | 33 |
electrically signaling cell | 7.39e-16 | 33 |
electrically responsive cell | 5.51e-14 | 39 |
electrically active cell | 5.51e-14 | 39 |
CNS neuron (sensu Vertebrata) | 6.18e-11 | 23 |
neuroblast (sensu Vertebrata) | 6.18e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.96e-34 | 73 |
ectoderm-derived structure | 5.51e-33 | 95 |
ectoderm | 5.51e-33 | 95 |
presumptive ectoderm | 5.51e-33 | 95 |
nervous system | 5.56e-33 | 75 |
ecto-epithelium | 2.63e-25 | 73 |
neurectoderm | 4.70e-25 | 64 |
neural plate | 4.70e-25 | 64 |
presumptive neural plate | 4.70e-25 | 64 |
regional part of nervous system | 5.52e-24 | 54 |
neural tube | 2.10e-22 | 52 |
neural rod | 2.10e-22 | 52 |
future spinal cord | 2.10e-22 | 52 |
neural keel | 2.10e-22 | 52 |
brain | 5.13e-19 | 47 |
future brain | 5.13e-19 | 47 |
regional part of brain | 2.04e-18 | 46 |
structure with developmental contribution from neural crest | 5.54e-17 | 92 |
gray matter | 3.35e-16 | 34 |
pre-chordal neural plate | 7.75e-16 | 49 |
anterior neural tube | 3.82e-15 | 40 |
regional part of forebrain | 1.48e-14 | 39 |
forebrain | 1.48e-14 | 39 |
future forebrain | 1.48e-14 | 39 |
brain grey matter | 4.43e-13 | 29 |
regional part of telencephalon | 4.43e-13 | 29 |
telencephalon | 4.43e-13 | 29 |
regional part of cerebral cortex | 7.05e-09 | 17 |
cerebral cortex | 8.51e-09 | 21 |
cerebral hemisphere | 8.51e-09 | 21 |
pallium | 8.51e-09 | 21 |
posterior neural tube | 3.97e-08 | 12 |
chordal neural plate | 3.97e-08 | 12 |