FFCP PHASE1:Mm9::chr7:99890142..99890225,+: Difference between revisions
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{{FFCP|EntrezGene=75985|HGNC=|MCL_coexpression_id=361|UniProt=Q0PD24,Q923S9|association_with_transcript=0bp_to_NM_029494,uc009iif.1_5end|description=CAGE_peak_1_at_Rab30_5end|id=chr7:99890142..99890225,+|ontology_enrichment_celltype=CL:0000117!2.34e-08!23;CL:0000337!2.34e-08!23;CL:0000393!1.72e-07!39;CL:0000211!1.72e-07!39;CL:0000540!8.77e-07!33;CL:0000047!8.77e-07!33;CL:0000031!8.77e-07!33;CL:0000404!8.77e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.30e-08,23;CL:0000337,2.30e-08,23;CL:0000393,1.69e-07,39;CL:0000211,1.69e-07,39;CL:0000540,8.65e-07,33;CL:0000047,8.65e-07,33;CL:0000031,8.65e-07,33;CL:0000404,8.65e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!9.66e-18!63;UBERON:0002346!1.10e-17!71;UBERON:0003075!1.10e-17!71;UBERON:0007284!1.10e-17!71;UBERON:0001049!4.26e-17!52;UBERON:0005068!4.26e-17!52;UBERON:0006241!4.26e-17!52;UBERON:0007135!4.26e-17!52;UBERON:0000955!2.47e-16!50;UBERON:0006238!2.47e-16!50;UBERON:0001017!6.41e-16!73;UBERON:0005743!6.41e-16!73;UBERON:0002616!8.56e-16!49;UBERON:0003056!1.18e-15!49;UBERON:0004121!7.66e-15!102;UBERON:0000924!7.66e-15!102;UBERON:0006601!7.66e-15!102;UBERON:0000073!8.41e-15!75;UBERON:0001016!8.41e-15!75;UBERON:0003080!9.64e-13!40;UBERON:0002020!2.25e-12!34;UBERON:0002780!3.93e-12!39;UBERON:0001890!3.93e-12!39;UBERON:0006240!3.93e-12!39;UBERON:0000468!1.47e-10!333;UBERON:0002791!4.26e-10!29;UBERON:0003528!4.26e-10!29;UBERON:0001893!4.26e-10!29;UBERON:0000025!5.23e-08!114;UBERON:0000922!5.25e-08!328;UBERON:0004111!1.19e-07!122;UBERON:0000479!7.51e-07!349;UBERON:0000153!7.77e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.59e-20,64;UBERON:0003075,5.59e-20,64;UBERON:0007284,5.59e-20,64;UBERON:0000073,2.89e-18,54;UBERON:0010371,1.45e-17,73;UBERON:0001049,4.10e-17,52;UBERON:0005068,4.10e-17,52;UBERON:0006241,4.10e-17,52;UBERON:0007135,4.10e-17,52;UBERON:0004121,3.42e-16,95;UBERON:0000924,3.42e-16,95;UBERON:0006601,3.42e-16,95;UBERON:0001017,6.18e-16,73;UBERON:0003056,1.14e-15,49;UBERON:0001016,8.13e-15,75;UBERON:0010314,1.05e-14,92;UBERON:0000955,1.46e-14,47;UBERON:0006238,1.46e-14,47;UBERON:0002616,4.88e-14,46;UBERON:0003080,9.38e-13,40;UBERON:0002020,2.19e-12,34;UBERON:0002780,3.82e-12,39;UBERON:0001890,3.82e-12,39;UBERON:0006240,3.82e-12,39;UBERON:0003528,4.17e-10,29;UBERON:0002791,4.17e-10,29;UBERON:0001893,4.17e-10,29;UBERON:0000922,3.38e-08,320;UBERON:0000025,5.14e-08,114;UBERON:0004111,1.18e-07,122;UBERON:0000479,7.41e-07,349|phase1_expression=6.08565618998217,4.53668029931169,0.909998478779072,7.56160528267075,4.50806156951712,1.84667199103079,3.73780224952841,0,0.422366166455,0,0,0.0797721589953364,0.342401459862411,0.437102012094987,9.66018309265422,22.069804145491,38.4759032970481,1.10411757875383,0.822686601634433,0.84877930359606,9.77997836737302,0.397163804803541,0.261199789138935,1.75991665072747,0.91763712426868,4.01962374880514,0.86152399231815,1.939241094173,1.71021077510736,1.26015064879965,0.886922042621219,6.98533740805594,4.30545351309199,0,0.866554859253824,0.997407872150954,1.22501613757421,0.418531630736908,0,0,0.588231488031014,0,0,49.9810367363042,44.7072266678059,43.5005802623185,7.04152209913235,3.2703773457067,4.17403747195497,7.77719596297134,3.21968769738334,4.31257693094915,0.167782606057736,0,1.00828139742739,10.8048963135098,8.02293631828519,5.15672092277442,20.4339625468194,13.2247744818008,18.3811107016792,2.03306719241479,5.33576877666684,0.449949858640699,0.988866362566974,0,2.09720077362883,4.99483796918021,17.7309237047497,10.2604513132085,14.5124223332454,18.2816630018434,20.7616428494517,18.0061474845982,11.9806838772795,12.8690630125403,37.4393995397922,31.1557104927858,38.2480267808046,22.2887826264028,24.0612502674337,31.7757156039624,26.8015679041326,29.826418331679,25.0589126353969,36.2393160132611,44.1352210477219,25.7231235238915,4.31639301999149,3.47629176491213,3.76823835312181,3.44169550792555,5.439770669662,5.39703191637817,5.19821133958135,4.48026887097336,11.0951091904084,15.5091593546033,9.09251016110041,11.3068663843309,7.60554466794075,12.8326477414318,5.09610479413291,7.11066703153331,2.59789249213457,2.28023878927589,3.0331466700887,5.36664234679582,12.6879562987114,8.60964406575984,8.15381035800839,13.3964810457342,6.45723392316964,10.8520301197888,11.8764594207062,2.63899841792318,10.8765785803125,11.7125479105128,9.73071607144862,7.60304194752823,9.49618529379692,10.1823803158397,7.45567044872489,44.7954619427667,61.5773318031558,3.57639877292028,0,0,0.381210681219194,40.2936819998973,38.8875512395833,24.3769443098957,31.8098505951866,30.6858548796397,31.3759947284936,32.772735139687,19.654997223111,14.4312085907708,21.734157225296,18.3084414621232,15.6144531555244,14.7137346837423,19.8068342785884,23.811361218043,16.8730517895293,24.3416068541215,21.082888025939,39.5816157230694,9.26942369611222,16.0740168142646,19.8824770305262,14.6861140726475,27.2486304241086,14.626590993931,16.2567887762275,10.9468846750171,0,0,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75985 | |||
|HGNC= | |||
|MCL_coexpression_id=361 | |||
|TSSclassifier=NA | |||
|UniProt=Q0PD24,Q923S9 | |||
|association_with_transcript=0bp_to_NM_029494,uc009iif.1_5end | |||
|cluster_id=chr7:99890142..99890225,+ | |||
|description=CAGE_peak_1_at_Rab30_5end | |||
|id=chr7:99890142..99890225,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.34e-08!23;CL:0000337!2.34e-08!23;CL:0000393!1.72e-07!39;CL:0000211!1.72e-07!39;CL:0000540!8.77e-07!33;CL:0000047!8.77e-07!33;CL:0000031!8.77e-07!33;CL:0000404!8.77e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.30e-08,23;CL:0000337,2.30e-08,23;CL:0000393,1.69e-07,39;CL:0000211,1.69e-07,39;CL:0000540,8.65e-07,33;CL:0000047,8.65e-07,33;CL:0000031,8.65e-07,33;CL:0000404,8.65e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!9.66e-18!63;UBERON:0002346!1.10e-17!71;UBERON:0003075!1.10e-17!71;UBERON:0007284!1.10e-17!71;UBERON:0001049!4.26e-17!52;UBERON:0005068!4.26e-17!52;UBERON:0006241!4.26e-17!52;UBERON:0007135!4.26e-17!52;UBERON:0000955!2.47e-16!50;UBERON:0006238!2.47e-16!50;UBERON:0001017!6.41e-16!73;UBERON:0005743!6.41e-16!73;UBERON:0002616!8.56e-16!49;UBERON:0003056!1.18e-15!49;UBERON:0004121!7.66e-15!102;UBERON:0000924!7.66e-15!102;UBERON:0006601!7.66e-15!102;UBERON:0000073!8.41e-15!75;UBERON:0001016!8.41e-15!75;UBERON:0003080!9.64e-13!40;UBERON:0002020!2.25e-12!34;UBERON:0002780!3.93e-12!39;UBERON:0001890!3.93e-12!39;UBERON:0006240!3.93e-12!39;UBERON:0000468!1.47e-10!333;UBERON:0002791!4.26e-10!29;UBERON:0003528!4.26e-10!29;UBERON:0001893!4.26e-10!29;UBERON:0000025!5.23e-08!114;UBERON:0000922!5.25e-08!328;UBERON:0004111!1.19e-07!122;UBERON:0000479!7.51e-07!349;UBERON:0000153!7.77e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.59e-20,64;UBERON:0003075,5.59e-20,64;UBERON:0007284,5.59e-20,64;UBERON:0000073,2.89e-18,54;UBERON:0010371,1.45e-17,73;UBERON:0001049,4.10e-17,52;UBERON:0005068,4.10e-17,52;UBERON:0006241,4.10e-17,52;UBERON:0007135,4.10e-17,52;UBERON:0004121,3.42e-16,95;UBERON:0000924,3.42e-16,95;UBERON:0006601,3.42e-16,95;UBERON:0001017,6.18e-16,73;UBERON:0003056,1.14e-15,49;UBERON:0001016,8.13e-15,75;UBERON:0010314,1.05e-14,92;UBERON:0000955,1.46e-14,47;UBERON:0006238,1.46e-14,47;UBERON:0002616,4.88e-14,46;UBERON:0003080,9.38e-13,40;UBERON:0002020,2.19e-12,34;UBERON:0002780,3.82e-12,39;UBERON:0001890,3.82e-12,39;UBERON:0006240,3.82e-12,39;UBERON:0003528,4.17e-10,29;UBERON:0002791,4.17e-10,29;UBERON:0001893,4.17e-10,29;UBERON:0000922,3.38e-08,320;UBERON:0000025,5.14e-08,114;UBERON:0004111,1.18e-07,122;UBERON:0000479,7.41e-07,349 | |||
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| |||
|short_description=p1@Rab30 | |||
}} |
Latest revision as of 06:21, 27 September 2015
Short description: | p1@Rab30 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab30_5end |
Coexpression cluster: | MCL_coexpression_mm9:361 |
Association with transcript: | 0bp_to_NM_029494, uc009iif.1_5end |
EntrezGene: | Rab30 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.30e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.30e-08 | 23 |
electrically responsive cell | 1.69e-07 | 39 |
electrically active cell | 1.69e-07 | 39 |
neuron | 8.65e-07 | 33 |
neuronal stem cell | 8.65e-07 | 33 |
neuroblast | 8.65e-07 | 33 |
electrically signaling cell | 8.65e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.59e-20 | 64 |
neural plate | 5.59e-20 | 64 |
presumptive neural plate | 5.59e-20 | 64 |
regional part of nervous system | 2.89e-18 | 54 |
ecto-epithelium | 1.45e-17 | 73 |
neural tube | 4.10e-17 | 52 |
neural rod | 4.10e-17 | 52 |
future spinal cord | 4.10e-17 | 52 |
neural keel | 4.10e-17 | 52 |
ectoderm-derived structure | 3.42e-16 | 95 |
ectoderm | 3.42e-16 | 95 |
presumptive ectoderm | 3.42e-16 | 95 |
central nervous system | 6.18e-16 | 73 |
pre-chordal neural plate | 1.14e-15 | 49 |
nervous system | 8.13e-15 | 75 |
structure with developmental contribution from neural crest | 1.05e-14 | 92 |
brain | 1.46e-14 | 47 |
future brain | 1.46e-14 | 47 |
regional part of brain | 4.88e-14 | 46 |
anterior neural tube | 9.38e-13 | 40 |
gray matter | 2.19e-12 | 34 |
regional part of forebrain | 3.82e-12 | 39 |
forebrain | 3.82e-12 | 39 |
future forebrain | 3.82e-12 | 39 |
brain grey matter | 4.17e-10 | 29 |
regional part of telencephalon | 4.17e-10 | 29 |
telencephalon | 4.17e-10 | 29 |
embryo | 3.38e-08 | 320 |
tube | 5.14e-08 | 114 |
anatomical conduit | 1.18e-07 | 122 |
tissue | 7.41e-07 | 349 |