FFCP PHASE1:Mm9::chr3:152009429..152009495,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=170822 | |EntrezGene=170822 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3219 | |MCL_coexpression_id=3219 | ||
|TSSclassifier=NA | |||
|UniProt=Q8R5K2,F7BRW0,D6RES0 | |UniProt=Q8R5K2,F7BRW0,D6RES0 | ||
|association_with_transcript=0bp_to_ENSMUST00000026507,ENSMUST00000073681,ENSMUST00000117492,ENSMUST00000123237,ENSMUST00000142969,NM_001076676,NM_001252486,NM_133247,uc008rth.1,uc008rti.1,uc008rtj.1,uc008rtk.1_5end | |association_with_transcript=0bp_to_ENSMUST00000026507,ENSMUST00000073681,ENSMUST00000117492,ENSMUST00000123237,ENSMUST00000142969,NM_001076676,NM_001252486,NM_133247,uc008rth.1,uc008rti.1,uc008rtj.1,uc008rtk.1_5end | ||
|cluster_id=chr3:152009429..152009495,+ | |||
|description=CAGE_peak_1_at_Usp33_5end | |description=CAGE_peak_1_at_Usp33_5end | ||
|id=chr3:152009429..152009495,+ | |id=chr3:152009429..152009495,+ | ||
|ontology_enrichment_celltype=CL:0000117!5.71e-08!23;CL:0000337!5.71e-08!23 | |ontology_enrichment_celltype=CL:0000117!5.71e-08!23;CL:0000337!5.71e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.71e-08,23;CL:0000337,5.71e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.20e-12!52;UBERON:0005068!5.20e-12!52;UBERON:0006241!5.20e-12!52;UBERON:0007135!5.20e-12!52;UBERON:0002020!6.28e-12!34;UBERON:0000955!1.44e-11!50;UBERON:0006238!1.44e-11!50;UBERON:0002346!1.62e-11!71;UBERON:0003075!1.62e-11!71;UBERON:0007284!1.62e-11!71;UBERON:0002616!3.72e-11!49;UBERON:0000033!4.05e-11!63;UBERON:0002791!6.28e-10!29;UBERON:0003528!6.28e-10!29;UBERON:0001893!6.28e-10!29;UBERON:0001017!1.50e-09!73;UBERON:0005743!1.50e-09!73;UBERON:0004121!1.71e-09!102;UBERON:0000924!1.71e-09!102;UBERON:0006601!1.71e-09!102;UBERON:0000073!2.64e-09!75;UBERON:0001016!2.64e-09!75;UBERON:0003080!3.73e-09!40;UBERON:0003056!8.68e-09!49;UBERON:0002780!1.13e-08!39;UBERON:0001890!1.13e-08!39;UBERON:0006240!1.13e-08!39;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10;UBERON:0000475!7.11e-07!200 | |ontology_enrichment_uberon=UBERON:0001049!5.20e-12!52;UBERON:0005068!5.20e-12!52;UBERON:0006241!5.20e-12!52;UBERON:0007135!5.20e-12!52;UBERON:0002020!6.28e-12!34;UBERON:0000955!1.44e-11!50;UBERON:0006238!1.44e-11!50;UBERON:0002346!1.62e-11!71;UBERON:0003075!1.62e-11!71;UBERON:0007284!1.62e-11!71;UBERON:0002616!3.72e-11!49;UBERON:0000033!4.05e-11!63;UBERON:0002791!6.28e-10!29;UBERON:0003528!6.28e-10!29;UBERON:0001893!6.28e-10!29;UBERON:0001017!1.50e-09!73;UBERON:0005743!1.50e-09!73;UBERON:0004121!1.71e-09!102;UBERON:0000924!1.71e-09!102;UBERON:0006601!1.71e-09!102;UBERON:0000073!2.64e-09!75;UBERON:0001016!2.64e-09!75;UBERON:0003080!3.73e-09!40;UBERON:0003056!8.68e-09!49;UBERON:0002780!1.13e-08!39;UBERON:0001890!1.13e-08!39;UBERON:0006240!1.13e-08!39;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10;UBERON:0000475!7.11e-07!200 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.79e-13,54;UBERON:0001049,5.20e-12,52;UBERON:0005068,5.20e-12,52;UBERON:0006241,5.20e-12,52;UBERON:0007135,5.20e-12,52;UBERON:0002020,6.28e-12,34;UBERON:0002346,1.66e-10,64;UBERON:0003075,1.66e-10,64;UBERON:0007284,1.66e-10,64;UBERON:0000955,5.85e-10,47;UBERON:0006238,5.85e-10,47;UBERON:0003528,6.28e-10,29;UBERON:0002791,6.28e-10,29;UBERON:0001893,6.28e-10,29;UBERON:0002616,1.45e-09,46;UBERON:0001017,1.50e-09,73;UBERON:0010371,2.45e-09,73;UBERON:0001016,2.64e-09,75;UBERON:0003080,3.73e-09,40;UBERON:0003056,8.68e-09,49;UBERON:0002780,1.13e-08,39;UBERON:0001890,1.13e-08,39;UBERON:0006240,1.13e-08,39;UBERON:0004121,1.83e-08,95;UBERON:0000924,1.83e-08,95;UBERON:0006601,1.83e-08,95;UBERON:0002021,1.36e-07,10;UBERON:0000411,1.36e-07,10;UBERON:0001950,1.36e-07,10 | |||
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|phase1_expression=41.7988490943512,41.1790981014446,34.1249429542152,78.9431591510826,76.6370466817911,30.2182689441402,25.9310031061034,28.5362544805884,24.6380263765417,27.1514850533512,19.5188483777076,20.1025840668248,30.6449306576858,25.7015983111852,49.6333545105337,56.0856490669818,55.2653883721236,27.918401634204,32.7703496317716,28.434106670468,35.292965412694,13.4042784121195,17.7615856614476,32.4784618270616,24.31738379312,26.988902313406,30.1533397311352,25.6410766896208,33.8241686632346,42.8451220591882,22.1730510655305,29.8464416526027,31.9833689543976,15.8481681015439,43.3277429626912,37.7352644963778,36.9546534834888,54.409111995798,57.8188154947612,70.152181692489,41.764435650202,53.2775478267588,55.8336905985827,30.2152363141385,25.4456097360982,23.8610777810186,21.1245662973971,11.1192829754028,5.4921545683618,14.387812531497,12.738764367908,10.062679505548,33.2209559994318,39.1695556686126,18.821252751978,21.0952737549477,26.9341433542431,27.8462929829819,39.8563427893408,38.6163414868584,36.1283899998522,10.5041804941431,8.89294796111139,8.54904731417329,6.92206453796882,10.6572017241915,11.085204089181,11.5265491596466,45.1049813541878,36.9916271028832,44.3785668451416,43.4189496293781,43.2902340265163,39.3195465480002,37.2838882260939,34.0110951045708,75.9799578895782,73.8032814132385,86.1732651567526,44.7094515405357,40.4375384722651,59.3841242434706,57.2325147952831,57.964548833263,69.0648079951182,64.5236602187332,64.4943714019936,52.7510431685601,31.5778226199377,31.1354827639956,55.3641173420205,56.7879758807715,21.759082678648,34.0013010731825,48.7332313085752,39.4263660645655,25.8417733042423,22.4968025803036,18.4448063268037,17.666978725517,33.8024207464033,26.9485602570067,109.566253073858,184.877342819866,27.277871167413,25.8427062784601,32.8590889259609,30.487095884989,29.5189187357776,50.1734430039108,32.4417561052674,29.5331513962777,38.5127880417618,40.6951129492081,44.5661200044321,50.1409699405405,40.7871696761717,33.8362495192593,30.9613693182456,30.7357014900077,38.6472657305689,27.6378894287077,48.4618579167118,62.069528966448,69.7457533688805,43.1722423302519,15.8155964347815,16.7972764678154,14.9942867946216,69.3530660444329,68.625090422794,52.6491735352902,70.5726739980642,90.0118409802763,63.1675655461063,72.0351208020844,26.8855920564835,33.8386960059453,42.4574234168574,57.2401848011209,20.8192708740326,23.2201125477808,22.5077662256687,35.5663370092288,38.7127680171056,40.8682767708671,44.0398105430725,89.7700696464384,21.5567992932842,31.391609307858,27.8002776179039,28.0570537507296,24.7462051810782,28.5566776548177,32.3077954160471,27.864797354589,19.6619692447706,22.3892679189802,22.4489164522518,17.6056906655177,20.4037672183554,24.308378297237,22.490749880595,24.2020005049307,23.1400669331067,27.6715394252985,24.4128795273653,31.1763464120343,25.013097186849,31.5201531031863,31.6979045324296,27.9241975982385,24.3700627973066,27.1096965895951,62.876694620674,51.9668292515386,41.9631854389423,35.1719253662514,28.5806255717213,30.190767341857,28.4797089521826,35.4963003337083,33.5790846205754,32.1481308130225,46.9783770929066,28.9870160314259,34.4329236056369,31.0372096384195,41.3323864692535,35.0539569375146,44.3083002243123,47.9930468543025,14.9837641752935,24.2206846732625,21.4144697778853,26.0673699642002,26.9593957163,30.5792174721789,38.3213414972999,37.6405877347986,38.7786857768196,40.1040782745852,31.4239784712378,23.6920050116854,22.0146074526787,26.7585913737976,33.87764027188,29.1824363300424,22.6617008085464,27.331133057827,29.3464760462814,27.4561413188081,46.0058260887535,30.8876986564858,30.5796919652269,37.1290950582254,28.524188749984,37.1481511449793,42.1237273579859,26.9077804714088,32.1041003590791,25.9709981236038,33.3260152569673,42.0440706178958,43.5619862821405,49.5639465558809,50.2856109698749,48.0578376537842,60.2739025525301,48.0119512117112,53.3596593965617,53.3755026165778,30.1582567878545,19.5806046174735,27.047035016047,33.1124095565679,78.3486879140425,80.5244286888436,19.8361283905777,35.0934588814078,27.4492150892143,24.9880796349849,30.5901224780574,31.3049125317843,35.8705865272655,38.78148471807,30.3608026256171,29.8100975069538,28.0654322342032,54.3033024752854,40.7368044547731,21.7240036474051,31.9258440333009,25.0754586918254,29.2039304347918,27.9197731578229,30.2323556964751,38.2868311904473,33.6644157884081,33.5104311258881,48.8429474087938,45.8052499141657,40.2842037574735,38.8725212261054,42.1674434299995,49.5050607591297,55.4916557378674,24.3082476942269,17.0753462593236,26.5777923439174,36.8867685975929,28.8957484515354,37.5171766972836,34.4045392499497,25.3445444708807,40.8835896767173,41.0182820382229,30.8337293000568,39.7202489671928,33.5339862600547,25.9037986486806,23.9645713627789,39.9328746182896,75.4680979182774,29.5606623780285,27.0366797031821,27.0384009959779,31.8342692337928,33.3533915639301,37.9771767522828,16.9978429993855,18.8934460636938,21.5591959134901,19.0934123603023,23.7251995185851,31.51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| ||
|short_description=p1@Usp33 | |short_description=p1@Usp33 | ||
}} | }} |
Latest revision as of 19:52, 1 October 2015
Short description: | p1@Usp33 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Usp33_5end |
Coexpression cluster: | MCL_coexpression_mm9:3219 |
Association with transcript: | 0bp_to_ENSMUST00000026507, ENSMUST00000073681, ENSMUST00000117492, ENSMUST00000123237, ENSMUST00000142969, NM_001076676, NM_001252486, NM_133247, uc008rth.1, uc008rti.1, uc008rtj.1, uc008rtk.1_5end |
EntrezGene: | Usp33 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.71e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.71e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.79e-13 | 54 |
neural tube | 5.20e-12 | 52 |
neural rod | 5.20e-12 | 52 |
future spinal cord | 5.20e-12 | 52 |
neural keel | 5.20e-12 | 52 |
gray matter | 6.28e-12 | 34 |
neurectoderm | 1.66e-10 | 64 |
neural plate | 1.66e-10 | 64 |
presumptive neural plate | 1.66e-10 | 64 |
brain | 5.85e-10 | 47 |
future brain | 5.85e-10 | 47 |
brain grey matter | 6.28e-10 | 29 |
regional part of telencephalon | 6.28e-10 | 29 |
telencephalon | 6.28e-10 | 29 |
regional part of brain | 1.45e-09 | 46 |
central nervous system | 1.50e-09 | 73 |
ecto-epithelium | 2.45e-09 | 73 |
nervous system | 2.64e-09 | 75 |
anterior neural tube | 3.73e-09 | 40 |
pre-chordal neural plate | 8.68e-09 | 49 |
regional part of forebrain | 1.13e-08 | 39 |
forebrain | 1.13e-08 | 39 |
future forebrain | 1.13e-08 | 39 |
ectoderm-derived structure | 1.83e-08 | 95 |
ectoderm | 1.83e-08 | 95 |
presumptive ectoderm | 1.83e-08 | 95 |
occipital lobe | 1.36e-07 | 10 |
visual cortex | 1.36e-07 | 10 |
neocortex | 1.36e-07 | 10 |