FFCP PHASE1:Mm9::chr11:6289333..6289400,+: Difference between revisions
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{{FFCP|EntrezGene=52915|HGNC=|MCL_coexpression_id=13|UniProt=Q8CIE2|association_with_transcript=0bp_to_ENSMUST00000012612,NM_028601,uc007hyl.1_5end|description=CAGE_peak_1_at_Zmiz2_5end|id=chr11:6289333..6289400,+|ontology_enrichment_celltype=CL:0000117!4.23e-14!23;CL:0000337!4.23e-14!23;CL:0000540!6.36e-11!33;CL:0000047!6.36e-11!33;CL:0000031!6.36e-11!33;CL:0000404!6.36e-11!33;CL:0000221!6.36e-07!44;CL:0000133!6.36e-07!44;CL:0002319!8.60e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,4.23e-14,23;CL:0000337,4.23e-14,23;CL:0000540,6.36e-11,33;CL:0000047,6.36e-11,33;CL:0000031,6.36e-11,33;CL:0000404,6.36e-11,33;CL:0000221,6.36e-07,44;CL:0000133,6.36e-07,44;CL:0002319,8.60e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.91e-21!73;UBERON:0005743!8.91e-21!73;UBERON:0000033!2.82e-20!63;UBERON:0001049!1.59e-19!52;UBERON:0005068!1.59e-19!52;UBERON:0006241!1.59e-19!52;UBERON:0007135!1.59e-19!52;UBERON:0000073!3.46e-19!75;UBERON:0001016!3.46e-19!75;UBERON:0000955!4.94e-19!50;UBERON:0006238!4.94e-19!50;UBERON:0002616!1.70e-18!49;UBERON:0002020!9.50e-17!34;UBERON:0003056!2.68e-16!49;UBERON:0004121!2.85e-16!102;UBERON:0000924!2.85e-16!102;UBERON:0006601!2.85e-16!102;UBERON:0003080!9.26e-16!40;UBERON:0007811!1.31e-15!86;UBERON:0002780!4.46e-15!39;UBERON:0001890!4.46e-15!39;UBERON:0006240!4.46e-15!39;UBERON:0002791!1.82e-14!29;UBERON:0003528!1.82e-14!29;UBERON:0001893!1.82e-14!29;UBERON:0000153!2.11e-14!94;UBERON:0002346!3.14e-14!71;UBERON:0003075!3.14e-14!71;UBERON:0007284!3.14e-14!71;UBERON:0000956!5.08e-10!21;UBERON:0001869!5.08e-10!21;UBERON:0000203!5.08e-10!21;UBERON:0000064!5.20e-10!99;UBERON:0002619!1.49e-07!17;UBERON:0002021!5.72e-07!10;UBERON:0000411!5.72e-07!10;UBERON:0001950!5.72e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.16e-21,54;UBERON:0001017,8.91e-21,73;UBERON:0004121,1.73e-20,95;UBERON:0000924,1.73e-20,95;UBERON:0006601,1.73e-20,95;UBERON:0001049,1.59e-19,52;UBERON:0005068,1.59e-19,52;UBERON:0006241,1.59e-19,52;UBERON:0007135,1.59e-19,52;UBERON:0002346,3.44e-19,64;UBERON:0003075,3.44e-19,64;UBERON:0007284,3.44e-19,64;UBERON:0001016,3.46e-19,75;UBERON:0010371,4.48e-19,73;UBERON:0000955,3.56e-17,47;UBERON:0006238,3.56e-17,47;UBERON:0002020,9.50e-17,34;UBERON:0002616,1.19e-16,46;UBERON:0003056,2.68e-16,49;UBERON:0003080,9.26e-16,40;UBERON:0002780,4.46e-15,39;UBERON:0001890,4.46e-15,39;UBERON:0006240,4.46e-15,39;UBERON:0003528,1.82e-14,29;UBERON:0002791,1.82e-14,29;UBERON:0001893,1.82e-14,29;UBERON:0000956,5.08e-10,21;UBERON:0001869,5.08e-10,21;UBERON:0000203,5.08e-10,21;UBERON:0010314,1.68e-09,92;UBERON:0002619,1.49e-07,17;UBERON:0002021,5.72e-07,10;UBERON:0000411,5.72e-07,10;UBERON:0001950,5.72e-07,10|phase1_expression=43.560486412504,48.5075816618712,57.7849034024711,87.4121570676739,88.6585442005035,51.2031779331264,59.571223351859,46.613519762409,45.61554597714,55.9414217909564,43.1469279928273,58.2336760665956,32.1857372270667,31.4713448708391,32.9778664197506,35.0282212584399,30.7807226376385,70.5057939575661,68.6943312364751,67.0535649840888,60.4657792974106,39.3192166755506,25.0751797573378,46.8777798784682,41.2936705920906,52.8293406985819,35.7532456812032,34.906339695114,30.7837939519326,33.2679771283109,29.7118884278108,41.9120244483357,54.1257013074422,15.8481681015439,35.2398976096555,32.083286554189,34.300451852078,9.62622750694888,5.4693474116666,8.89990364755457,9.41170380849623,11.6117732442936,9.71020706062307,15.7371022469472,16.9299475136589,16.5192076945513,24.2541316747892,39.4625533048608,26.1426557454021,27.0257559713254,21.4179225086805,23.0004102983955,61.2406512110738,38.4441935266013,63.5217280379257,13.8920095459411,16.9054729563866,14.4388185837684,128.268636184985,134.363708735096,137.541414560841,17.958760199664,13.3394219416671,80.0910748380445,97.8977698941305,94.4938552878313,63.5152234299018,61.8591471567703,129.197256936363,146.211431213221,126.405301772181,79.4109736642574,79.9544118244841,120.285964829085,134.471195838586,154.428756150484,155.263392209138,114.663229600499,117.508997941026,133.205150607496,127.991213399771,111.996374669703,119.769506571592,86.102679334847,94.8877118693991,115.494405505678,91.8297341154214,94.1317201417768,21.7334174866238,27.4324763187631,40.2911639295332,16.3480536626463,8.15965600449301,23.2072372404261,19.4932925234301,21.5052905806721,31.1786612692489,7.32850387085648,9.87186817490901,6.36011234118612,43.661460130771,14.115912515575,28.028576367731,14.2213340630666,18.8347205679756,24.5759069510846,19.2099289105618,33.7984283968418,79.2349923960345,35.7745555146228,28.104622936114,24.0527727866592,17.2961622942044,18.38816214742,23.517741427141,23.1226528046603,32.8769307086717,42.3676115775341,45.9997487013935,26.5297633913751,27.3843482890888,25.2135131630315,44.7340226923493,103.937182939099,96.9738252546297,45.9822699375464,38.8201003399182,29.395233818677,29.3532224538779,147.693570453155,124.897664569485,135.832354634006,147.40302352305,12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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52915 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CIE2 | |||
|association_with_transcript=0bp_to_ENSMUST00000012612,NM_028601,uc007hyl.1_5end | |||
|cluster_id=chr11:6289333..6289400,+ | |||
|description=CAGE_peak_1_at_Zmiz2_5end | |||
|id=chr11:6289333..6289400,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.23e-14!23;CL:0000337!4.23e-14!23;CL:0000540!6.36e-11!33;CL:0000047!6.36e-11!33;CL:0000031!6.36e-11!33;CL:0000404!6.36e-11!33;CL:0000221!6.36e-07!44;CL:0000133!6.36e-07!44;CL:0002319!8.60e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.23e-14,23;CL:0000337,4.23e-14,23;CL:0000540,6.36e-11,33;CL:0000047,6.36e-11,33;CL:0000031,6.36e-11,33;CL:0000404,6.36e-11,33;CL:0000221,6.36e-07,44;CL:0000133,6.36e-07,44;CL:0002319,8.60e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.91e-21!73;UBERON:0005743!8.91e-21!73;UBERON:0000033!2.82e-20!63;UBERON:0001049!1.59e-19!52;UBERON:0005068!1.59e-19!52;UBERON:0006241!1.59e-19!52;UBERON:0007135!1.59e-19!52;UBERON:0000073!3.46e-19!75;UBERON:0001016!3.46e-19!75;UBERON:0000955!4.94e-19!50;UBERON:0006238!4.94e-19!50;UBERON:0002616!1.70e-18!49;UBERON:0002020!9.50e-17!34;UBERON:0003056!2.68e-16!49;UBERON:0004121!2.85e-16!102;UBERON:0000924!2.85e-16!102;UBERON:0006601!2.85e-16!102;UBERON:0003080!9.26e-16!40;UBERON:0007811!1.31e-15!86;UBERON:0002780!4.46e-15!39;UBERON:0001890!4.46e-15!39;UBERON:0006240!4.46e-15!39;UBERON:0002791!1.82e-14!29;UBERON:0003528!1.82e-14!29;UBERON:0001893!1.82e-14!29;UBERON:0000153!2.11e-14!94;UBERON:0002346!3.14e-14!71;UBERON:0003075!3.14e-14!71;UBERON:0007284!3.14e-14!71;UBERON:0000956!5.08e-10!21;UBERON:0001869!5.08e-10!21;UBERON:0000203!5.08e-10!21;UBERON:0000064!5.20e-10!99;UBERON:0002619!1.49e-07!17;UBERON:0002021!5.72e-07!10;UBERON:0000411!5.72e-07!10;UBERON:0001950!5.72e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.16e-21,54;UBERON:0001017,8.91e-21,73;UBERON:0004121,1.73e-20,95;UBERON:0000924,1.73e-20,95;UBERON:0006601,1.73e-20,95;UBERON:0001049,1.59e-19,52;UBERON:0005068,1.59e-19,52;UBERON:0006241,1.59e-19,52;UBERON:0007135,1.59e-19,52;UBERON:0002346,3.44e-19,64;UBERON:0003075,3.44e-19,64;UBERON:0007284,3.44e-19,64;UBERON:0001016,3.46e-19,75;UBERON:0010371,4.48e-19,73;UBERON:0000955,3.56e-17,47;UBERON:0006238,3.56e-17,47;UBERON:0002020,9.50e-17,34;UBERON:0002616,1.19e-16,46;UBERON:0003056,2.68e-16,49;UBERON:0003080,9.26e-16,40;UBERON:0002780,4.46e-15,39;UBERON:0001890,4.46e-15,39;UBERON:0006240,4.46e-15,39;UBERON:0003528,1.82e-14,29;UBERON:0002791,1.82e-14,29;UBERON:0001893,1.82e-14,29;UBERON:0000956,5.08e-10,21;UBERON:0001869,5.08e-10,21;UBERON:0000203,5.08e-10,21;UBERON:0010314,1.68e-09,92;UBERON:0002619,1.49e-07,17;UBERON:0002021,5.72e-07,10;UBERON:0000411,5.72e-07,10;UBERON:0001950,5.72e-07,10 | |||
|phase1_expression=43.560486412504,48.5075816618712,57.7849034024711,87.4121570676739,88.6585442005035,51.2031779331264,59.571223351859,46.613519762409,45.61554597714,55.9414217909564,43.1469279928273,58.2336760665956,32.1857372270667,31.4713448708391,32.9778664197506,35.0282212584399,30.7807226376385,70.5057939575661,68.6943312364751,67.0535649840888,60.4657792974106,39.3192166755506,25.0751797573378,46.8777798784682,41.2936705920906,52.8293406985819,35.7532456812032,34.906339695114,30.7837939519326,33.2679771283109,29.7118884278108,41.9120244483357,54.1257013074422,15.8481681015439,35.2398976096555,32.083286554189,34.300451852078,9.62622750694888,5.4693474116666,8.89990364755457,9.41170380849623,11.6117732442936,9.71020706062307,15.7371022469472,16.9299475136589,16.5192076945513,24.2541316747892,39.4625533048608,26.1426557454021,27.0257559713254,21.4179225086805,23.0004102983955,61.2406512110738,38.4441935266013,63.5217280379257,13.8920095459411,16.9054729563866,14.4388185837684,128.268636184985,134.363708735096,137.541414560841,17.958760199664,13.3394219416671,80.0910748380445,97.8977698941305,94.4938552878313,63.5152234299018,61.8591471567703,129.197256936363,146.211431213221,126.405301772181,79.4109736642574,79.9544118244841,120.285964829085,134.471195838586,154.428756150484,155.263392209138,114.663229600499,117.508997941026,133.205150607496,127.991213399771,111.996374669703,119.769506571592,86.102679334847,94.8877118693991,115.494405505678,91.8297341154214,94.1317201417768,21.7334174866238,27.4324763187631,40.2911639295332,16.3480536626463,8.15965600449301,23.2072372404261,19.4932925234301,21.5052905806721,31.1786612692489,7.32850387085648,9.87186817490901,6.36011234118612,43.661460130771,14.115912515575,28.028576367731,14.2213340630666,18.8347205679756,24.5759069510846,19.2099289105618,33.7984283968418,79.2349923960345,35.7745555146228,28.104622936114,24.0527727866592,17.2961622942044,18.38816214742,23.517741427141,23.1226528046603,32.8769307086717,42.3676115775341,45.9997487013935,26.5297633913751,27.3843482890888,25.2135131630315,44.7340226923493,103.937182939099,96.9738252546297,45.9822699375464,38.8201003399182,29.395233818677,29.3532224538779,147.693570453155,124.897664569485,135.832354634006,147.40302352305,128.369159579826,121.140429978224,98.4804466821289,31.2646847020471,26.74749868117,34.6230179054134,63.3429986218287,39.2963737747365,27.8181546364502,44.835470321532,39.0325478194502,61.1648127370437,56.6262643659036,50.0367209148952,45.2730898793277,47.856094431091,37.632109953396,27.448375369576,28.2762494831572,25.3022996795294,35.8699731517832,36.217656007798,30.651277090048,25.9818879305897,25.9921386185862,23.017243451043,31.4831174253963,21.5763975182609,26.2890609733082,38.1159024292188,38.3690251907437,28.6936829970524,33.0198201545579,42.6554708225394,28.7242742223237,31.9246108832152,28.2368038216044,41.8315057256616,40.4973965168171,35.7866687924413,36.2357330653004,96.7333763394985,111.960218268661,43.9456981368451,39.1386838662046,31.1400845781442,29.0295839825548,43.0417320815792,37.5131355799417,29.3539017875229,29.2947464213341,46.9783770929066,28.9870160314259,27.1442025504291,31.4351225825018,30.4143975905827,41.3456927980942,39.1209870273197,46.0016341217588,32.62287896393,31.0755954298462,31.5581659884625,30.7513505046424,34.1356377415021,32.0520696898756,42.6846625588737,50.7778909049831,41.2906654222816,42.9422130447866,26.9771890649305,33.2021760375027,31.2528802229993,31.2558336214947,27.9946967516134,29.4236134897949,19.3515647353879,24.7418678207697,29.0222055927313,14.0026320725922,11.5014565221884,19.7234702264307,19.0342980599882,22.2269412593458,22.0658818631952,22.1924019827149,38.2439103644872,20.2755810594419,28.1929409244705,35.8162130985647,27.2240688014662,32.9987327160377,35.23045885113,35.1240566144038,36.7289885767425,34.5484915852089,39.0664183210843,38.180152328767,31.0832967358612,31.8227928879325,78.4114676484216,102.254268557917,33.4399705652945,31.1808523324348,105.160636442004,88.260400003929,20.0000633359544,43.6774704063565,30.9198055027932,33.1872932652143,40.9304455692318,36.0842884908354,33.8653984605239,38.78148471807,36.8377738524154,39.4545408180271,39.9240655725989,108.285283634149,32.7881596831101,35.4350551297838,34.206261464251,39.427859390436,47.7882498023866,30.5903601555277,31.1393263673694,33.383099116794,42.5234725748313,31.3583850902806,23.5169746783081,42.5334463488681,32.4412614330096,38.8725212261054,39.0048851727495,40.2228618667929,48.6828636227917,39.4333795928569,53.0370603509293,40.2953625859394,39.3695318685847,34.0684441619955,36.2007845324666,52.9769011459403,31.6806805886009,26.0553447162499,32.4176745140794,66.9438186942409,44.0797884879822,41.0731018760741,36.8860542969692,41.1993658360104,37.8925087618806,94.1960534213389,46.4768795770159,27.862227175035,23.149315921214,35.0365330028725,44.1522355538911,37.5196204058697,35.6954702987096,33.1684942007069,35.7937932153458,52.5068839908312,35.113295287506,34.157670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| |||
|short_description=p1@Zmiz2 | |||
}} |
Latest revision as of 21:29, 1 October 2015
Short description: | p1@Zmiz2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zmiz2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000012612, NM_028601, uc007hyl.1_5end |
EntrezGene: | Zmiz2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.23e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.23e-14 | 23 |
neuron | 6.36e-11 | 33 |
neuronal stem cell | 6.36e-11 | 33 |
neuroblast | 6.36e-11 | 33 |
electrically signaling cell | 6.36e-11 | 33 |
ectodermal cell | 6.36e-07 | 44 |
neurectodermal cell | 6.36e-07 | 44 |
neural cell | 8.60e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.16e-21 | 54 |
central nervous system | 8.91e-21 | 73 |
ectoderm-derived structure | 1.73e-20 | 95 |
ectoderm | 1.73e-20 | 95 |
presumptive ectoderm | 1.73e-20 | 95 |
neural tube | 1.59e-19 | 52 |
neural rod | 1.59e-19 | 52 |
future spinal cord | 1.59e-19 | 52 |
neural keel | 1.59e-19 | 52 |
neurectoderm | 3.44e-19 | 64 |
neural plate | 3.44e-19 | 64 |
presumptive neural plate | 3.44e-19 | 64 |
nervous system | 3.46e-19 | 75 |
ecto-epithelium | 4.48e-19 | 73 |
brain | 3.56e-17 | 47 |
future brain | 3.56e-17 | 47 |
gray matter | 9.50e-17 | 34 |
regional part of brain | 1.19e-16 | 46 |
pre-chordal neural plate | 2.68e-16 | 49 |
anterior neural tube | 9.26e-16 | 40 |
regional part of forebrain | 4.46e-15 | 39 |
forebrain | 4.46e-15 | 39 |
future forebrain | 4.46e-15 | 39 |
brain grey matter | 1.82e-14 | 29 |
regional part of telencephalon | 1.82e-14 | 29 |
telencephalon | 1.82e-14 | 29 |
cerebral cortex | 5.08e-10 | 21 |
cerebral hemisphere | 5.08e-10 | 21 |
pallium | 5.08e-10 | 21 |
structure with developmental contribution from neural crest | 1.68e-09 | 92 |
regional part of cerebral cortex | 1.49e-07 | 17 |
occipital lobe | 5.72e-07 | 10 |
visual cortex | 5.72e-07 | 10 |
neocortex | 5.72e-07 | 10 |