FFCP PHASE1:Mm9::chrX:67618195..67618217,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chrX:67618195..67618217,- to FFCP PHASE1:Mm9::chrX:67618195..67618217,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=15931 | |EntrezGene=15931 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q08890 | |UniProt=Q08890 | ||
|association_with_transcript=41bp_to_ENSMUST00000101509_5end | |||
|cluster_id=chrX:67618195..67618217,- | |||
|description=CAGE_peak_2_at_Ids_5end | |||
|id=chrX:67618195..67618217,- | |||
|ontology_enrichment_celltype=CL:0000117!1.52e-12!23;CL:0000337!1.52e-12!23;CL:0000540!1.68e-11!33;CL:0000047!1.68e-11!33;CL:0000031!1.68e-11!33;CL:0000404!1.68e-11!33;CL:0002319!3.36e-11!43;CL:0000393!3.66e-11!39;CL:0000211!3.66e-11!39;CL:0000221!6.99e-11!44;CL:0000133!6.99e-11!44;CL:0000055!1.94e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.27e-12,23;CL:0000337,1.27e-12,23;CL:0000540,1.42e-11,33;CL:0000047,1.42e-11,33;CL:0000031,1.42e-11,33;CL:0000404,1.42e-11,33;CL:0000393,3.11e-11,39;CL:0000211,3.11e-11,39;CL:0002319,3.22e-11,43;CL:0000221,6.72e-11,44;CL:0000133,6.72e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.63e-25!102;UBERON:0000924!1.63e-25!102;UBERON:0006601!1.63e-25!102;UBERON:0001017!1.08e-24!73;UBERON:0005743!1.08e-24!73;UBERON:0000073!1.25e-24!75;UBERON:0001016!1.25e-24!75;UBERON:0001049!7.55e-21!52;UBERON:0005068!7.55e-21!52;UBERON:0006241!7.55e-21!52;UBERON:0007135!7.55e-21!52;UBERON:0000033!3.29e-20!63;UBERON:0000955!5.27e-20!50;UBERON:0006238!5.27e-20!50;UBERON:0002346!6.90e-20!71;UBERON:0003075!6.90e-20!71;UBERON:0007284!6.90e-20!71;UBERON:0002616!1.57e-19!49;UBERON:0002020!3.98e-19!34;UBERON:0003056!4.69e-17!49;UBERON:0003080!1.34e-16!40;UBERON:0002791!1.66e-16!29;UBERON:0003528!1.66e-16!29;UBERON:0001893!1.66e-16!29;UBERON:0002780!5.43e-16!39;UBERON:0001890!5.43e-16!39;UBERON:0006240!5.43e-16!39;UBERON:0000956!1.41e-11!21;UBERON:0001869!1.41e-11!21;UBERON:0000203!1.41e-11!21;UBERON:0002619!7.27e-10!17;UBERON:0007811!2.39e-09!86;UBERON:0000153!4.63e-09!94;UBERON:0002021!1.34e-07!10;UBERON:0000411!1.34e-07!10;UBERON:0001950!1.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.82e-27,95;UBERON:0000924,5.82e-27,95;UBERON:0006601,5.82e-27,95;UBERON:0001017,8.46e-25,73;UBERON:0001016,9.82e-25,75;UBERON:0000073,2.24e-22,54;UBERON:0010371,4.41e-22,73;UBERON:0002346,1.05e-21,64;UBERON:0003075,1.05e-21,64;UBERON:0007284,1.05e-21,64;UBERON:0001049,6.37e-21,52;UBERON:0005068,6.37e-21,52;UBERON:0006241,6.37e-21,52;UBERON:0007135,6.37e-21,52;UBERON:0002020,2.95e-19,34;UBERON:0000955,4.70e-18,47;UBERON:0006238,4.70e-18,47;UBERON:0002616,1.38e-17,46;UBERON:0003056,3.63e-17,49;UBERON:0003080,1.04e-16,40;UBERON:0003528,1.29e-16,29;UBERON:0002791,1.29e-16,29;UBERON:0001893,1.29e-16,29;UBERON:0002780,4.25e-16,39;UBERON:0001890,4.25e-16,39;UBERON:0006240,4.25e-16,39;UBERON:0010314,4.45e-12,92;UBERON:0000956,1.19e-11,21;UBERON:0001869,1.19e-11,21;UBERON:0000203,1.19e-11,21;UBERON:0002619,6.32e-10,17;UBERON:0002021,1.21e-07,10;UBERON:0000411,1.21e-07,10;UBERON:0001950,1.21e-07,10 | |||
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| ||
|short_description=p2@Ids | |||
}} | }} |
Latest revision as of 23:08, 1 October 2015
Short description: | p2@Ids |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ids_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 41bp_to_ENSMUST00000101509_5end |
EntrezGene: | Ids |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.27e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.27e-12 | 23 |
neuron | 1.42e-11 | 33 |
neuronal stem cell | 1.42e-11 | 33 |
neuroblast | 1.42e-11 | 33 |
electrically signaling cell | 1.42e-11 | 33 |
electrically responsive cell | 3.11e-11 | 39 |
electrically active cell | 3.11e-11 | 39 |
neural cell | 3.22e-11 | 43 |
ectodermal cell | 6.72e-11 | 44 |
neurectodermal cell | 6.72e-11 | 44 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.82e-27 | 95 |
ectoderm | 5.82e-27 | 95 |
presumptive ectoderm | 5.82e-27 | 95 |
central nervous system | 8.46e-25 | 73 |
nervous system | 9.82e-25 | 75 |
regional part of nervous system | 2.24e-22 | 54 |
ecto-epithelium | 4.41e-22 | 73 |
neurectoderm | 1.05e-21 | 64 |
neural plate | 1.05e-21 | 64 |
presumptive neural plate | 1.05e-21 | 64 |
neural tube | 6.37e-21 | 52 |
neural rod | 6.37e-21 | 52 |
future spinal cord | 6.37e-21 | 52 |
neural keel | 6.37e-21 | 52 |
gray matter | 2.95e-19 | 34 |
brain | 4.70e-18 | 47 |
future brain | 4.70e-18 | 47 |
regional part of brain | 1.38e-17 | 46 |
pre-chordal neural plate | 3.63e-17 | 49 |
anterior neural tube | 1.04e-16 | 40 |
brain grey matter | 1.29e-16 | 29 |
regional part of telencephalon | 1.29e-16 | 29 |
telencephalon | 1.29e-16 | 29 |
regional part of forebrain | 4.25e-16 | 39 |
forebrain | 4.25e-16 | 39 |
future forebrain | 4.25e-16 | 39 |
structure with developmental contribution from neural crest | 4.45e-12 | 92 |
cerebral cortex | 1.19e-11 | 21 |
cerebral hemisphere | 1.19e-11 | 21 |
pallium | 1.19e-11 | 21 |
regional part of cerebral cortex | 6.32e-10 | 17 |
occipital lobe | 1.21e-07 | 10 |
visual cortex | 1.21e-07 | 10 |
neocortex | 1.21e-07 | 10 |