FFCP PHASE1:Mm9::chrX:7305672..7305705,+: Difference between revisions
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{{FFCP|EntrezGene=54637|HGNC=|MCL_coexpression_id=2383|UniProt=A2AEV6,Q9JIG8|association_with_transcript=0bp_to_NM_138602,uc009sme.1_5end|description=CAGE_peak_1_at_Praf2_5end|id=chrX:7305672..7305705,+|ontology_enrichment_celltype=CL:0000055!2.10e-20!50;CL:0002319!1.17e-18!43;CL:0000221!2.17e-18!44;CL:0000133!2.17e-18!44;CL:0000393!2.01e-15!39;CL:0000211!2.01e-15!39;CL:0000540!6.90e-13!33;CL:0000047!6.90e-13!33;CL:0000031!6.90e-13!33;CL:0000404!6.90e-13!33;CL:0000117!2.21e-11!23;CL:0000337!2.21e-11!23;CL:0002321!3.12e-09!70;CL:0000220!3.12e-09!70;CL:0000333!6.51e-07!10;CL:0000095!6.51e-07!10;CL:0000243!6.51e-07!10;CL:0000123!6.51e-07!10;CL:0000125!6.51e-07!10;CL:0000030!6.51e-07!10;CL:0000339!6.51e-07!10|ontology_enrichment_celltype_v019_2=CL:0002319,1.17e-18,43;CL:0000221,2.17e-18,44;CL:0000133,2.17e-18,44;CL:0000393,2.01e-15,39;CL:0000211,2.01e-15,39;CL:0000540,6.90e-13,33;CL:0000047,6.90e-13,33;CL:0000031,6.90e-13,33;CL:0000404,6.90e-13,33;CL:0000117,2.21e-11,23;CL:0000337,2.21e-11,23;CL:0002321,3.13e-09,70;CL:0000333,6.51e-07,10;CL:0000095,6.51e-07,10;CL:0000243,6.51e-07,10;CL:0000123,6.51e-07,10;CL:0000125,6.51e-07,10;CL:0000030,6.51e-07,10;CL:0000339,6.51e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.33e-33!75;UBERON:0001016!4.33e-33!75;UBERON:0001017!4.29e-32!73;UBERON:0005743!4.29e-32!73;UBERON:0004121!3.68e-25!102;UBERON:0000924!3.68e-25!102;UBERON:0006601!3.68e-25!102;UBERON:0001049!9.54e-23!52;UBERON:0005068!9.54e-23!52;UBERON:0006241!9.54e-23!52;UBERON:0007135!9.54e-23!52;UBERON:0000955!1.37e-22!50;UBERON:0006238!1.37e-22!50;UBERON:0002616!5.03e-22!49;UBERON:0002346!7.02e-21!71;UBERON:0003075!7.02e-21!71;UBERON:0007284!7.02e-21!71;UBERON:0000033!7.66e-21!63;UBERON:0002020!6.11e-17!34;UBERON:0003056!7.24e-17!49;UBERON:0003080!1.96e-16!40;UBERON:0002780!9.63e-16!39;UBERON:0001890!9.63e-16!39;UBERON:0006240!9.63e-16!39;UBERON:0002791!5.11e-15!29;UBERON:0003528!5.11e-15!29;UBERON:0001893!5.11e-15!29;UBERON:0000956!5.17e-11!21;UBERON:0001869!5.17e-11!21;UBERON:0000203!5.17e-11!21;UBERON:0000153!1.61e-10!94;UBERON:0002619!2.14e-09!17;UBERON:0007811!9.33e-09!86;UBERON:0003076!5.28e-07!12;UBERON:0003057!5.28e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.33e-33,75;UBERON:0001017,4.29e-32,73;UBERON:0004121,9.39e-28,95;UBERON:0000924,9.39e-28,95;UBERON:0006601,9.39e-28,95;UBERON:0000073,3.50e-24,54;UBERON:0002346,4.40e-24,64;UBERON:0003075,4.40e-24,64;UBERON:0007284,4.40e-24,64;UBERON:0001049,9.54e-23,52;UBERON:0005068,9.54e-23,52;UBERON:0006241,9.54e-23,52;UBERON:0007135,9.54e-23,52;UBERON:0000955,1.89e-20,47;UBERON:0006238,1.89e-20,47;UBERON:0002616,6.72e-20,46;UBERON:0010371,2.48e-19,73;UBERON:0002020,6.11e-17,34;UBERON:0003056,7.24e-17,49;UBERON:0003080,1.96e-16,40;UBERON:0010314,3.78e-16,92;UBERON:0002780,9.63e-16,39;UBERON:0001890,9.63e-16,39;UBERON:0006240,9.63e-16,39;UBERON:0003528,5.11e-15,29;UBERON:0002791,5.11e-15,29;UBERON:0001893,5.11e-15,29;UBERON:0000956,5.17e-11,21;UBERON:0001869,5.17e-11,21;UBERON:0000203,5.17e-11,21;UBERON:0002619,2.14e-09,17;UBERON:0003076,5.28e-07,12;UBERON:0003057,5.28e-07,12|phase1_expression=36.8342348341026,24.4282785347553,26.3899558845931,13.6108895088074,10.5188103288733,15.4448930158939,17.5209480446644,16.2695387536386,9.99599927276834,7.49006484230379,13.6974374580404,18.9857738408901,14.7232627740837,19.4947497394364,6.32908547449759,7.49158489342356,1.39912375625629,12.3030244489713,13.5743289269681,11.0341309467488,40.3105195316071,12.5106598513115,12.5375898786689,34.7183557461693,41.7524891542249,27.563134277521,22.3996238002719,27.5803177837938,22.4227634958521,10.837295579677,27.7163138319131,13.3356441426523,16.6067492647834,0,8.66554859253824,14.7948834369058,9.80012910059372,2.51118978442145,3.906676722619,3.14114246384279,1.17646297606203,1.36609096991689,1.45653105909346,81.2034475942474,82.9263297375629,103.520368219188,196.380227431358,130.379043515507,171.355222532888,153.016330571461,111.009232348912,145.190090008621,11.9125650300993,13.0565185562042,13.4437519656986,135.318463354908,123.209379173665,64.9746836269577,104.799926725272,113.204069564215,107.117507192544,134.860123763515,138.729988193338,58.0435317646502,78.120442642791,59.6803296554724,136.318050285874,178.277293669201,79.01148457906,86.9438242856088,95.277207492176,101.977401432158,93.6482613634841,81.3338906787295,72.7467125028414,88.245003514562,172.88193316904,158.587673901803,162.822925251618,103.135077005012,98.715167447,98.9735404057844,178.956302359885,131.123688137381,129.878510610289,80.7282324197849,87.131468649051,86.3029434171142,73.3786813398553,107.765044712276,31.3053647797812,14.6272059086836,0.679971333707751,5.39703191637817,11.0461990966104,6.2723764193627,18.8195522976547,146.229216771974,123.658138190966,147.695942145322,38.1685667594804,39.7812079984385,12.7402619853323,7.11066703153331,32.9066382337045,36.2304607629391,40.4419556011827,14.9580882431969,49.1981978929626,21.078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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54637 | |||
|HGNC= | |||
|MCL_coexpression_id=2383 | |||
|TSSclassifier=NA | |||
|UniProt=A2AEV6,Q9JIG8 | |||
|association_with_transcript=0bp_to_NM_138602,uc009sme.1_5end | |||
|cluster_id=chrX:7305672..7305705,+ | |||
|description=CAGE_peak_1_at_Praf2_5end | |||
|id=chrX:7305672..7305705,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.10e-20!50;CL:0002319!1.17e-18!43;CL:0000221!2.17e-18!44;CL:0000133!2.17e-18!44;CL:0000393!2.01e-15!39;CL:0000211!2.01e-15!39;CL:0000540!6.90e-13!33;CL:0000047!6.90e-13!33;CL:0000031!6.90e-13!33;CL:0000404!6.90e-13!33;CL:0000117!2.21e-11!23;CL:0000337!2.21e-11!23;CL:0002321!3.12e-09!70;CL:0000220!3.12e-09!70;CL:0000333!6.51e-07!10;CL:0000095!6.51e-07!10;CL:0000243!6.51e-07!10;CL:0000123!6.51e-07!10;CL:0000125!6.51e-07!10;CL:0000030!6.51e-07!10;CL:0000339!6.51e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.17e-18,43;CL:0000221,2.17e-18,44;CL:0000133,2.17e-18,44;CL:0000393,2.01e-15,39;CL:0000211,2.01e-15,39;CL:0000540,6.90e-13,33;CL:0000047,6.90e-13,33;CL:0000031,6.90e-13,33;CL:0000404,6.90e-13,33;CL:0000117,2.21e-11,23;CL:0000337,2.21e-11,23;CL:0002321,3.13e-09,70;CL:0000333,6.51e-07,10;CL:0000095,6.51e-07,10;CL:0000243,6.51e-07,10;CL:0000123,6.51e-07,10;CL:0000125,6.51e-07,10;CL:0000030,6.51e-07,10;CL:0000339,6.51e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.33e-33!75;UBERON:0001016!4.33e-33!75;UBERON:0001017!4.29e-32!73;UBERON:0005743!4.29e-32!73;UBERON:0004121!3.68e-25!102;UBERON:0000924!3.68e-25!102;UBERON:0006601!3.68e-25!102;UBERON:0001049!9.54e-23!52;UBERON:0005068!9.54e-23!52;UBERON:0006241!9.54e-23!52;UBERON:0007135!9.54e-23!52;UBERON:0000955!1.37e-22!50;UBERON:0006238!1.37e-22!50;UBERON:0002616!5.03e-22!49;UBERON:0002346!7.02e-21!71;UBERON:0003075!7.02e-21!71;UBERON:0007284!7.02e-21!71;UBERON:0000033!7.66e-21!63;UBERON:0002020!6.11e-17!34;UBERON:0003056!7.24e-17!49;UBERON:0003080!1.96e-16!40;UBERON:0002780!9.63e-16!39;UBERON:0001890!9.63e-16!39;UBERON:0006240!9.63e-16!39;UBERON:0002791!5.11e-15!29;UBERON:0003528!5.11e-15!29;UBERON:0001893!5.11e-15!29;UBERON:0000956!5.17e-11!21;UBERON:0001869!5.17e-11!21;UBERON:0000203!5.17e-11!21;UBERON:0000153!1.61e-10!94;UBERON:0002619!2.14e-09!17;UBERON:0007811!9.33e-09!86;UBERON:0003076!5.28e-07!12;UBERON:0003057!5.28e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.33e-33,75;UBERON:0001017,4.29e-32,73;UBERON:0004121,9.39e-28,95;UBERON:0000924,9.39e-28,95;UBERON:0006601,9.39e-28,95;UBERON:0000073,3.50e-24,54;UBERON:0002346,4.40e-24,64;UBERON:0003075,4.40e-24,64;UBERON:0007284,4.40e-24,64;UBERON:0001049,9.54e-23,52;UBERON:0005068,9.54e-23,52;UBERON:0006241,9.54e-23,52;UBERON:0007135,9.54e-23,52;UBERON:0000955,1.89e-20,47;UBERON:0006238,1.89e-20,47;UBERON:0002616,6.72e-20,46;UBERON:0010371,2.48e-19,73;UBERON:0002020,6.11e-17,34;UBERON:0003056,7.24e-17,49;UBERON:0003080,1.96e-16,40;UBERON:0010314,3.78e-16,92;UBERON:0002780,9.63e-16,39;UBERON:0001890,9.63e-16,39;UBERON:0006240,9.63e-16,39;UBERON:0003528,5.11e-15,29;UBERON:0002791,5.11e-15,29;UBERON:0001893,5.11e-15,29;UBERON:0000956,5.17e-11,21;UBERON:0001869,5.17e-11,21;UBERON:0000203,5.17e-11,21;UBERON:0002619,2.14e-09,17;UBERON:0003076,5.28e-07,12;UBERON:0003057,5.28e-07,12 | |||
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| |||
|short_description=p1@Praf2 | |||
}} |
Latest revision as of 00:31, 2 October 2015
Short description: | p1@Praf2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Praf2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2383 |
Association with transcript: | 0bp_to_NM_138602, uc009sme.1_5end |
EntrezGene: | Praf2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.17e-18 | 43 |
ectodermal cell | 2.17e-18 | 44 |
neurectodermal cell | 2.17e-18 | 44 |
electrically responsive cell | 2.01e-15 | 39 |
electrically active cell | 2.01e-15 | 39 |
neuron | 6.90e-13 | 33 |
neuronal stem cell | 6.90e-13 | 33 |
neuroblast | 6.90e-13 | 33 |
electrically signaling cell | 6.90e-13 | 33 |
CNS neuron (sensu Vertebrata) | 2.21e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-11 | 23 |
embryonic cell | 3.13e-09 | 70 |
migratory neural crest cell | 6.51e-07 | 10 |
neuron associated cell | 6.51e-07 | 10 |
glial cell (sensu Vertebrata) | 6.51e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 6.51e-07 | 10 |
glial cell | 6.51e-07 | 10 |
glioblast | 6.51e-07 | 10 |
glioblast (sensu Vertebrata) | 6.51e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.33e-33 | 75 |
central nervous system | 4.29e-32 | 73 |
ectoderm-derived structure | 9.39e-28 | 95 |
ectoderm | 9.39e-28 | 95 |
presumptive ectoderm | 9.39e-28 | 95 |
regional part of nervous system | 3.50e-24 | 54 |
neurectoderm | 4.40e-24 | 64 |
neural plate | 4.40e-24 | 64 |
presumptive neural plate | 4.40e-24 | 64 |
neural tube | 9.54e-23 | 52 |
neural rod | 9.54e-23 | 52 |
future spinal cord | 9.54e-23 | 52 |
neural keel | 9.54e-23 | 52 |
brain | 1.89e-20 | 47 |
future brain | 1.89e-20 | 47 |
regional part of brain | 6.72e-20 | 46 |
ecto-epithelium | 2.48e-19 | 73 |
gray matter | 6.11e-17 | 34 |
pre-chordal neural plate | 7.24e-17 | 49 |
anterior neural tube | 1.96e-16 | 40 |
structure with developmental contribution from neural crest | 3.78e-16 | 92 |
regional part of forebrain | 9.63e-16 | 39 |
forebrain | 9.63e-16 | 39 |
future forebrain | 9.63e-16 | 39 |
brain grey matter | 5.11e-15 | 29 |
regional part of telencephalon | 5.11e-15 | 29 |
telencephalon | 5.11e-15 | 29 |
cerebral cortex | 5.17e-11 | 21 |
cerebral hemisphere | 5.17e-11 | 21 |
pallium | 5.17e-11 | 21 |
regional part of cerebral cortex | 2.14e-09 | 17 |
posterior neural tube | 5.28e-07 | 12 |
chordal neural plate | 5.28e-07 | 12 |