FF:10064-101I1: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	small intestine, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11773
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	small intestine
dev stage	16 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B205082
catalog number	Cat:RtHFN: Small intesti
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005077

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11773		CAGE		DRX008725		DRR009597

Accession ID Hg19

Library id		BAM		CTSS
CNhs11773		DRZ001022		DRZ002407

Accession ID Hg38

Library id		BAM		CTSS
CNhs11773		DRZ012372		DRZ013757

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.277
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0851
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0.969
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.246
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0858
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00178
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.439
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0598
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0118
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.28
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.321
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.403
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.157
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.107
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.472
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.674
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0858
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.321
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0858
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.314
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.219
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0.439
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0827
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0858
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0858
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.01
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0181
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0858
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0858
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0858
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.518
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.203
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0858
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0858
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.055
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.246
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.273
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.157
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.352
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0655
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00587
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0265
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11773

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0172
MA0003.1	MA0003.1	0.0993
MA0004.1	MA0004.1	0.0801
MA0006.1	MA0006.1	0.0547
MA0007.1	MA0007.1	0.992
MA0009.1	MA0009.1	0.634
MA0014.1	MA0014.1	0.665
MA0017.1	MA0017.1	1.13073e-20
MA0018.2	MA0018.2	0.03
MA0019.1	MA0019.1	0.322
MA0024.1	MA0024.1	0.799
MA0025.1	MA0025.1	0.125
MA0027.1	MA0027.1	0.779
MA0028.1	MA0028.1	0.00239
MA0029.1	MA0029.1	0.854
MA0030.1	MA0030.1	0.84
MA0031.1	MA0031.1	0.622
MA0035.2	MA0035.2	0.00178
MA0038.1	MA0038.1	0.715
MA0039.2	MA0039.2	0.445
MA0040.1	MA0040.1	0.586
MA0041.1	MA0041.1	0.454
MA0042.1	MA0042.1	0.355
MA0043.1	MA0043.1	6.72746e-5
MA0046.1	MA0046.1	2.67096e-52
MA0047.2	MA0047.2	0.214
MA0048.1	MA0048.1	0.205
MA0050.1	MA0050.1	0.0159
MA0051.1	MA0051.1	0.081
MA0052.1	MA0052.1	0.0652
MA0055.1	MA0055.1	0.015
MA0057.1	MA0057.1	0.363
MA0058.1	MA0058.1	0.0667
MA0059.1	MA0059.1	0.0103
MA0060.1	MA0060.1	0.0641
MA0061.1	MA0061.1	2.28612e-6
MA0062.2	MA0062.2	1.70202e-5
MA0065.2	MA0065.2	0.038
MA0066.1	MA0066.1	0.477
MA0067.1	MA0067.1	0.00592
MA0068.1	MA0068.1	0.828
MA0069.1	MA0069.1	0.659
MA0070.1	MA0070.1	0.798
MA0071.1	MA0071.1	0.316
MA0072.1	MA0072.1	0.0448
MA0073.1	MA0073.1	0.635
MA0074.1	MA0074.1	0.669
MA0076.1	MA0076.1	0.00505
MA0077.1	MA0077.1	0.8
MA0078.1	MA0078.1	0.116
MA0079.2	MA0079.2	0.38
MA0080.2	MA0080.2	0.0133
MA0081.1	MA0081.1	0.0178
MA0083.1	MA0083.1	0.697
MA0084.1	MA0084.1	0.455
MA0087.1	MA0087.1	0.0851
MA0088.1	MA0088.1	0.0858
MA0090.1	MA0090.1	0.899
MA0091.1	MA0091.1	0.894
MA0092.1	MA0092.1	0.497
MA0093.1	MA0093.1	0.112
MA0099.2	MA0099.2	2.74262e-24
MA0100.1	MA0100.1	0.0612
MA0101.1	MA0101.1	9.43511e-5
MA0102.2	MA0102.2	0.0163
MA0103.1	MA0103.1	0.00177
MA0104.2	MA0104.2	1.91046e-5
MA0105.1	MA0105.1	3.58552e-6
MA0106.1	MA0106.1	7.69484e-4
MA0107.1	MA0107.1	1.76213e-4
MA0108.2	MA0108.2	4.38893e-5
MA0111.1	MA0111.1	0.639
MA0112.2	MA0112.2	0.382
MA0113.1	MA0113.1	0.447
MA0114.1	MA0114.1	6.68948e-18
MA0115.1	MA0115.1	2.22327e-4
MA0116.1	MA0116.1	0.079
MA0117.1	MA0117.1	0.0356
MA0119.1	MA0119.1	0.285
MA0122.1	MA0122.1	0.915
MA0124.1	MA0124.1	0.623
MA0125.1	MA0125.1	0.67
MA0131.1	MA0131.1	0.61
MA0135.1	MA0135.1	0.479
MA0136.1	MA0136.1	6.95427e-4
MA0137.2	MA0137.2	0.269
MA0138.2	MA0138.2	0.0958
MA0139.1	MA0139.1	0.838
MA0140.1	MA0140.1	0.777
MA0141.1	MA0141.1	0.32
MA0142.1	MA0142.1	0.264
MA0143.1	MA0143.1	0.149
MA0144.1	MA0144.1	0.134
MA0145.1	MA0145.1	0.646
MA0146.1	MA0146.1	0.624
MA0147.1	MA0147.1	4.00149e-6
MA0148.1	MA0148.1	0.142
MA0149.1	MA0149.1	0.054
MA0150.1	MA0150.1	5.96523e-12
MA0152.1	MA0152.1	0.258
MA0153.1	MA0153.1	9.70223e-33
MA0154.1	MA0154.1	0.242
MA0155.1	MA0155.1	0.553
MA0156.1	MA0156.1	0.0111
MA0157.1	MA0157.1	0.033
MA0159.1	MA0159.1	0.464
MA0160.1	MA0160.1	0.397
MA0162.1	MA0162.1	0.248
MA0163.1	MA0163.1	0.322
MA0164.1	MA0164.1	0.271
MA0258.1	MA0258.1	0.753
MA0259.1	MA0259.1	0.0295

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11773

Novel motif	Logo	P-value
1	1	0.113
10	10	0.155
100	100	0.601
101	101	0.833
102	102	0.226
103	103	0.809
104	104	0.597
105	105	0.499
106	106	0.391
107	107	0.123
108	108	0.647
109	109	0.0999
11	11	0.54
110	110	0.419
111	111	0.391
112	112	0.403
113	113	0.0136
114	114	0.15
115	115	0.557
116	116	0.427
117	117	0.00723
118	118	0.538
119	119	0.646
12	12	0.796
120	120	0.815
121	121	0.319
122	122	0.56
123	123	0.854
124	124	0.215
125	125	0.346
126	126	0.729
127	127	0.277
128	128	0.0416
129	129	0.959
13	13	0.304
130	130	0.83
131	131	0.585
132	132	0.0161
133	133	0.52
134	134	0.827
135	135	0.436
136	136	0.518
137	137	0.108
138	138	0.682
139	139	0.0456
14	14	0.481
140	140	0.668
141	141	0.544
142	142	0.908
143	143	0.0103
144	144	0.743
145	145	0.622
146	146	0.373
147	147	0.547
148	148	0.659
149	149	0.208
15	15	0.136
150	150	0.714
151	151	0.805
152	152	0.128
153	153	0.839
154	154	0.758
155	155	0.743
156	156	0.314
157	157	0.773
158	158	0.552
159	159	0.205
16	16	0.763
160	160	0.861
161	161	0.907
162	162	0.201
163	163	0.204
164	164	0.87
165	165	0.855
166	166	0.44
167	167	0.371
168	168	0.678
169	169	0.7
17	17	0.902
18	18	0.00639
19	19	0.251
2	2	0.0172
20	20	0.0923
21	21	0.592
22	22	0.915
23	23	0.964
24	24	0.583
25	25	0.413
26	26	0.737
27	27	0.352
28	28	0.657
29	29	0.12
3	3	0.464
30	30	0.0527
31	31	0.665
32	32	0.00595
33	33	0.359
34	34	0.223
35	35	0.233
36	36	0.0161
37	37	0.115
38	38	0.867
39	39	0.336
4	4	0.482
40	40	0.834
41	41	0.0195
42	42	0.326
43	43	0.316
44	44	0.0478
45	45	0.475
46	46	0.384
47	47	0.454
48	48	0.95
49	49	0.0436
5	5	0.219
50	50	0.591
51	51	0.706
52	52	0.132
53	53	0.595
54	54	0.738
55	55	0.291
56	56	0.962
57	57	0.229
58	58	0.866
59	59	0.559
6	6	0.675
60	60	0.393
61	61	0.345
62	62	0.417
63	63	0.475
64	64	0.957
65	65	0.893
66	66	0.0101
67	67	0.432
68	68	0.279
69	69	0.706
7	7	0.552
70	70	0.248
71	71	0.071
72	72	0.451
73	73	0.478
74	74	0.0711
75	75	0.00534
76	76	0.162
77	77	0.132
78	78	0.45
79	79	0.238
8	8	0.456
80	80	0.807
81	81	0.291
82	82	0.742
83	83	0.724
84	84	0.99
85	85	0.747
86	86	0.148
87	87	0.0515
88	88	0.85
89	89	0.91
9	9	0.842
90	90	0.062
91	91	0.66
92	92	0.901
93	93	0.104
94	94	0.0368
95	95	0.19
96	96	0.411
97	97	0.152
98	98	0.409
99	99	0.0482

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11773

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010064 human small intestine - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002108 (small intestine)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010064 (human small intestine - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005077
-|accession_numbers=CAGE;DRX008725;DRR009597;DRZ001022;DRZ002407
+|accession_numbers=CAGE;DRX008725;DRR009597;DRZ001022;DRZ002407;DRZ012372;DRZ013757
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:149546334..149546364,+!p1@CDX1!2.15!138.79!CDX1;;chr6:134210243..134210257,+!p1@TCF21!2.13!133.76!TCF21;;chr1:201979743..201979762,+!p1@ELF3!2.10!125.89!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!2.10!125.45!NR0B2;;chr19:4153613..4153652,+!p1@CREB3L3!2.04!109.06!CREB3L3;;chr16:79634595..79634620,-!p2@MAF!2.00!176.60!MAF;;chr1:201979703..201979721,+!p2@ELF3!1.96!89.83!ELF3;;chr16:79634624..79634642,-!p1@MAF!1.84!255.28!MAF;;chr19:33793430..33793447,-!p1@CEBPA!1.83!267.30!CEBPA;;chr8:76319876..76319926,+!p1@HNF4G!1.78!59.89!HNF4G;;chr13:72441315..72441454,-!p1@DACH1!1.74!106.00!DACH1;;chr4:174451370..174451387,-!p1@HAND2!1.70!49.18!HAND2;;chr8:76452097..76452126,+!p2@HNF4G!1.69!48.52!HNF4G;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.48!FOXF1;;chr13:28543431..28543487,-!p1@CDX2!1.66!44.80!CDX2;;chr18:19749386..19749404,+!p2@GATA6!1.62!57.48!GATA6;;chr16:85932760..85932775,+!p1@IRF8!1.61!39.56!IRF8;;chr12:100897130..100897149,+!p3@NR1H4!1.60!38.90!NR1H4;;chr8:11561684..11561751,+!p1@GATA4!1.60!38.90!GATA4;;chr16:79634581..79634592,-!p4@MAF!1.59!37.59!MAF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.37!ZBED1;;chr20:42984330..42984364,+!p2@HNF4A!1.56!35.41!HNF4A;;chr20:43029862..43029900,+!p1@HNF4A!1.56!34.97!HNF4A;;chr7:115608319..115608352,-!p4@TFEC!1.55!34.31!TFEC;;chr3:141043020..141043049,+!p17@ZBTB38!1.53!33.22!ZBTB38;;chr3:141043050..141043063,+!p22@ZBTB38!1.53!32.57!ZBTB38;;chr20:61051039..61051057,-!p1@GATA5!1.52!32.13!GATA5;;chr13:28543285..28543314,-!p2@CDX2!1.50!30.38!CDX2;;chr11:16419037..16419064,-!p3@SOX6!1.48!29.07!SOX6;;chr19:46806868..46806883,+!p3@HIF3A!1.48!29.07!HIF3A;;chr6:1389789..1389821,+!p1@FOXF2!1.46!38.25!FOXF2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.46!27.54!PEG3;;chr1:209979467..209979494,-!p1@IRF6!1.42!28.19!IRF6;;chr18:55102628..55102646,+!p2@ONECUT2!1.42!25.35!ONECUT2;;chr10:101292684..101292706,+!p1@NKX2-3!1.41!24.70!NKX2-3;;chr18:19749541..19749557,+!p1@GATA6!1.38!71.03!GATA6;;chr3:119500941..119500961,+!p1@NR1I2!1.37!22.51!NR1I2;;chr8:76452129..76452159,+!p5@HNF4G!1.37!22.29!HNF4G;;chr20:62680984..62680999,-!p1@SOX18!1.35!28.41!SOX18;;chr1:40105299..40105326,-!p1@HEYL!1.34!20.76!HEYL;;chr19:46800289..46800327,+!p2@HIF3A!1.28!17.92!HIF3A;;chr8:10588010..10588030,-!p1@SOX7!1.27!17.48!SOX7;;chr2:60780753..60780800,-!p1@BCL11A!1.26!83.27!BCL11A;;chr2:145277882..145277967,-!p3@ZEB2!1.25!29.07!ZEB2;;chr19:46801639..46801699,+!p1@HIF3A!1.25!16.61!HIF3A;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.39!NFATC2;;chr1:42801540..42801562,-!p4@FOXJ3!1.22!15.52!FOXJ3;;chr2:182545234..182545252,-!p1@NEUROD1!1.21!15.30!NEUROD1;;chr2:19558373..19558392,-!p1@OSR1!1.19!39.56!OSR1;;chr13:28494130..28494168,+!p1@PDX1!1.19!14.64!PDX1;;chr6:34524093..34524135,-!p1@SPDEF!1.19!14.42!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.42!PITX1;;chr1:214161272..214161322,+!p1@PROX1!1.18!19.67!PROX1;;chr11:47400078..47400106,-!p1@SPI1!1.18!13.99!SPI1;;chr11:65554528..65554546,+!p1@OVOL1!1.18!13.99!OVOL1;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!13.99!ONECUT2;;chr19:50922187..50922204,+!p1@SPIB!1.17!13.77!SPIB;;chr4:94749897..94749909,+!p1@ATOH1!1.17!13.77!ATOH1;;chr13:73633131..73633149,+!p1@KLF5!1.14!135.73!KLF5;;chr5:153857778..153857794,-!p1@HAND1!1.14!12.90!HAND1;;chr13:28543316..28543329,-!p4@CDX2!1.13!12.46!CDX2;;chr3:24536485..24536500,-!p3@THRB!1.13!12.46!THRB;;chr4:174451350..174451363,-!p3@HAND2!1.13!12.46!HAND2;;chr21:39870339..39870443,-!p1@ERG!1.13!12.46!ERG;;chr13:28543388..28543406,-!p3@CDX2!1.12!12.24!CDX2;;chr17:1959369..1959388,+!p2@HIC1!1.10!31.04!HIC1;;chr19:46367576..46367592,+!p1@FOXA3!1.10!11.58!FOXA3;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.33!GATA6;;chr2:60780607..60780624,-!p2@BCL11A!1.06!32.13!BCL11A;;chr7:115608357..115608372,-!p3@TFEC!1.05!10.27!TFEC;;chr7:73038839..73038862,-!p1@MLXIPL!1.05!10.27!MLXIPL;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.27!DACH1;;chr18:19749353..19749367,+!p4@GATA6!1.05!10.27!GATA6;;chr19:926055..926068,+!p2@ARID3A!1.04!21.86!ARID3A;;chr11:61520075..61520136,+!p1@C11orf9!1.04!21.20!C11orf9;;chr3:71355163..71355209,-!p5@FOXP1!1.04!13.99!FOXP1;;chr11:34664014..34664045,+!p4@EHF!1.03!9.84!EHF;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.84!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.03!9.62!HOXC5;;chr1:25291475..25291511,-!p2@RUNX3!1.03!9.62!RUNX3;;chr1:200011711..200011752,+!p3@NR5A2!1.02!9.40!NR5A2;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.40!FOXS1;;chr2:74726710..74726736,-!p3@LBX2!1.02!9.40!LBX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.02!9.40!SEBOX;;chr19:926001..926046,+!p1@ARID3A!1.01!32.78!ARID3A;;chr6:36355513..36355578,-!p2@ETV7!1.01!11.80!ETV7;;chr8:11534438..11534451,+!p3@GATA4!1.01!9.18!GATA4;;chr17:46671108..46671147,-!p1@HOXB5!1.01!9.18!HOXB5;;chr4:41750731..41750748,-!p1@PHOX2B!1.01!9.18!PHOX2B;;chr2:16080659..16080685,+!p1@MYCN!1.00!8.96!MYCN;;chr3:24536253..24536328,-!p1@THRB!0.99!16.83!THRB;;chr7:27170359..27170381,-!p1@HOXA4!0.99!8.74!HOXA4;;chr7:27192185.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002108;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520fetal%252c%2520donor1.CNhs11773.10064-101I1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520fetal%252c%2520donor1.CNhs11773.10064-101I1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520fetal%252c%2520donor1.CNhs11773.10064-101I1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520fetal%252c%2520donor1.CNhs11773.10064-101I1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520fetal%252c%2520donor1.CNhs11773.10064-101I1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10064-101I1
 |is_a=EFO:0002091;;FF:0010064
 |is_obsolete=
 |library_id=CNhs11773
-|library_id_phase_based=1:CNhs11773
+|library_id_phase_based=2:CNhs11773
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10064
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10064
 |name=small intestine, fetal, donor1
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11773,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10064-101I1;search_select_hide=table117:FF:10064-101I1
 }}

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FF:10064-101I1: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0