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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008531
|DRA_sample_Accession=CAGE@SAMD00005845
|accession_numbers=CAGE;DRX008639;DRR009511;DRZ000936;DRZ002321
|accession_numbers=CAGE;DRX008639;DRR009511;DRZ000936;DRZ002321;DRZ012286;DRZ013671
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.51!318.96!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.40!251.74!ELF3;;chr3:12330560..12330579,+!p1@PPARG!2.27!208.97!PPARG;;chr5:149546334..149546364,+!p1@CDX1!2.11!127.09!CDX1;;chr16:79634595..79634620,-!p2@MAF!2.01!179.03!MAF;;chr6:34524093..34524135,-!p1@SPDEF!1.97!92.27!SPDEF;;chr4:174451370..174451387,-!p1@HAND2!1.97!91.65!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.90!77.60!TCF21;;chr11:34642612..34642646,+!p1@EHF!1.89!75.77!EHF;;chr13:28543431..28543487,-!p1@CDX2!1.84!68.44!CDX2;;chr19:46801639..46801699,+!p1@HIF3A!1.83!66.60!HIF3A;;chr19:46367576..46367592,+!p1@FOXA3!1.77!58.05!FOXA3;;chr16:86544113..86544145,+!p1@FOXF1!1.76!70.27!FOXF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.72!51.33!ZBED1;;chr7:27192185..27192209,-!p1@HOXA3!1.71!50.72!HOXA3;;chr17:46682321..46682362,-!p1@HOXB6!1.71!50.10!HOXB6;;chr20:42984330..42984364,+!p2@HNF4A!1.71!50.10!HNF4A;;chr16:79634624..79634642,-!p1@MAF!1.69!179.03!MAF;;chr2:60780753..60780800,-!p1@BCL11A!1.68!218.14!BCL11A;;chr19:50922187..50922204,+!p1@SPIB!1.68!46.44!SPIB;;chr13:72441315..72441454,-!p1@DACH1!1.65!84.93!DACH1;;chr8:76319876..76319926,+!p1@HNF4G!1.64!42.77!HNF4G;;chr13:28543253..28543276,-!p5@CDX2!1.62!40.33!CDX2;;chr20:62680984..62680999,-!p1@SOX18!1.61!51.94!SOX18;;chr13:28543285..28543314,-!p2@CDX2!1.61!39.72!CDX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.60!38.49!TFCP2L1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.66!FOXF2;;chr9:20382446..20382493,-!p4@MLLT3!1.54!33.61!MLLT3;;chr16:85932760..85932775,+!p1@IRF8!1.54!33.61!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.49!120.98!CEBPA;;chr11:65554528..65554546,+!p1@OVOL1!1.49!29.94!OVOL1;;chr1:214161272..214161322,+!p1@PROX1!1.48!40.33!PROX1;;chr1:199996831..199996843,+!p4@NR5A2!1.46!28.11!NR5A2;;chr19:46800289..46800327,+!p2@HIF3A!1.45!27.50!HIF3A;;chr3:119500941..119500961,+!p1@NR1I2!1.45!26.89!NR1I2;;chr2:176973498..176973524,+!p1@HOXD10!1.44!26.27!HOXD10;;chr13:73633131..73633149,+!p1@KLF5!1.41!254.80!KLF5;;chr6:135502501..135502546,+!p1@MYB!1.40!28.72!MYB;;chr2:70142232..70142251,+!p1@MXD1!1.39!128.32!MXD1;;chr20:50159198..50159299,-!p1@NFATC2!1.39!34.22!NFATC2;;chr17:53342311..53342400,+!p1@HLF!1.38!26.27!HLF;;chr3:141043020..141043049,+!p17@ZBTB38!1.38!23.22!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!1.37!58.05!HIC1;;chr7:27224842..27224872,-!p1@HOXA11!1.37!22.61!HOXA11;;chr10:101292684..101292706,+!p1@NKX2-3!1.37!22.61!NKX2-3;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.21!GATA6;;chr11:34642656..34642667,+!p2@EHF!1.35!21.39!EHF;;chr13:28543316..28543329,-!p4@CDX2!1.35!21.39!CDX2;;chr14:38064429..38064486,-!p1@FOXA1!1.35!21.39!FOXA1;;chr19:4153613..4153652,+!p1@CREB3L3!1.35!21.39!CREB3L3;;chr20:43029862..43029900,+!p1@HNF4A!1.35!21.39!HNF4A;;chr8:102504651..102504683,+!p1@GRHL2!1.34!20.78!GRHL2;;chr16:79634581..79634592,-!p4@MAF!1.33!20.16!MAF;;chr12:100897130..100897149,+!p3@NR1H4!1.33!20.16!NR1H4;;chr2:177001290..177001315,+!p1@HOXD3!1.33!20.16!HOXD3;;chr1:47903709..47903764,+!p1@BC169308!1.30!21.39!FOXD2;;chr15:42749722..42749739,-!p2@ZFP106!1.29!33.00!ZFP106;;chr18:19749386..19749404,+!p2@GATA6!1.27!25.05!GATA6;;chr1:151804244..151804310,-!p1@RORC!1.27!17.72!RORC;;chr10:114709999..114710031,+!p1@TCF7L2!1.25!383.73!TCF7L2;;chr14:75745523..75745537,+!p1@FOS!1.24!1896.03!FOS;;chr18:72922811..72922827,+!p1@TSHZ1!1.24!80.66!TSHZ1;;chr6:1389824..1389840,+!p3@FOXF2!1.24!16.50!FOXF2;;chr11:65554563..65554576,+!p2@OVOL1!1.23!15.89!OVOL1;;chr13:72441074..72441172,-!p2@DACH1!1.23!15.89!DACH1;;chr1:200011711..200011752,+!p3@NR5A2!1.23!15.89!NR5A2;;chr7:113726357..113726443,+!p1@FOXP2!1.22!26.89!FOXP2;;chr1:209979467..209979494,-!p1@IRF6!1.22!17.72!IRF6;;chr12:48298765..48298783,-!p2@VDR!1.21!31.77!VDR;;chr17:46687959..46688007,-!p2@HOXB7!1.21!20.78!HOXB7;;chr4:94749897..94749909,+!p1@ATOH1!1.21!15.28!ATOH1;;chr13:28543388..28543406,-!p3@CDX2!1.19!14.66!CDX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.18!20.16!ZBTB16;;chr3:18486354..18486377,-!p2@SATB1!1.18!17.72!SATB1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.05!HOXC5;;chr7:27205136..27205164,-!p1@HOXA9!1.18!14.05!HOXA9;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.18!14.05!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.17!38.49!EPAS1;;chr14:75746722..75746777,+!p2@FOS!1.17!17.72!FOS;;chr2:145277882..145277967,-!p3@ZEB2!1.16!23.22!ZEB2;;chr9:110251836..110251887,-!p4@KLF4!1.16!17.72!KLF4;;chr9:110250697..110250738,-!p2@KLF4!1.16!15.89!KLF4;;chr4:41750731..41750748,-!p1@PHOX2B!1.16!13.44!PHOX2B;;chr15:96873984..96873999,+!p3@NR2F2!1.15!96.54!NR2F2;;chr4:174451350..174451363,-!p3@HAND2!1.14!12.83!HAND2;;chr8:10588010..10588030,-!p1@SOX7!1.14!12.83!SOX7;;chr3:18466787..18466839,-!p1@SATB1!1.12!54.38!SATB1;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.22!SOX17;;chr11:47279248..47279264,+!p3@NR1H3!1.11!13.44!NR1H3;;chr1:27240455..27240474,-!p1@NR0B2!1.10!11.61!NR0B2;;chr17:36105042..36105060,-!p1@HNF1B!1.10!11.61!HNF1B;;chr1:61548225..61548299,+!p1@NFIA!1.08!146.04!NFIA;;chr5:1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 40: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg38.nobarcode.ctss.bed.gz
|id=FF:10070-101I7
|id=FF:10070-101I7
|is_a=EFO:0002091;;FF:0010070
|is_a=EFO:0002091;;FF:0010070
|is_obsolete=
|is_obsolete=
|library_id=CNhs11780
|library_id=CNhs11780
|library_id_phase_based=1:CNhs11780
|library_id_phase_based=2:CNhs11780
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10070
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10070
|name=colon, fetal, donor1
|name=colon, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11780,LSID820,release009,COMPLETED
|profile_hcage=CNhs11780,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 89: Line 100:
|top_motifs=HNF4A_NR2F1,2:4.23213585725;HNF1A:3.66884520747;FOXD3:2.92721141115;DBP:2.84435762306;MTF1:2.81686810515;T:2.61933567985;FOXL1:2.58024244692;IKZF2:2.15092046023;SRF:2.14168067706;TBP:2.12472495717;MYBL2:2.08668101871;SPZ1:2.0599219404;XCPE1{core}:1.99725479595;SNAI1..3:1.96979491823;SP1:1.90238550067;PRDM1:1.89061090688;MAZ:1.87940120276;TFCP2:1.8553722361;NKX2-3_NKX2-5:1.81415899514;ZEB1:1.78904647683;FOXP1:1.78685258251;MTE{core}:1.74624593916;POU5F1:1.73557120817;FOX{D1,D2}:1.72386018613;HOX{A6,A7,B6,B7}:1.70894389693;FOXO1,3,4:1.66219272129;MZF1:1.5851454858;PATZ1:1.55926687621;BPTF:1.49623422813;NR6A1:1.48900555928;GATA6:1.47894814979;EP300:1.43587610272;NR1H4:1.40816470151;TFAP2{A,C}:1.40513847116;HIC1:1.31105079078;MED-1{core}:1.30463449407;TFAP2B:1.29705018936;POU6F1:1.28187940821;ZNF148:1.22778671672;GTF2I:1.2242285745;PAX6:1.21775999506;GATA4:1.21279719842;FOXM1:1.18084071155;FOX{F1,F2,J1}:1.13621634746;MYFfamily:1.13231817325;ATF6:1.08443081382;CDX1,2,4:0.980958589194;FOX{I1,J2}:0.977353080066;HMX1:0.951260868394;NR3C1:0.915552555352;TFAP4:0.875596755923;SOX5:0.871518726484;HMGA1,2:0.864941462929;EGR1..3:0.853071321553;RREB1:0.830396714929;ADNP_IRX_SIX_ZHX:0.76746501804;TLX1..3_NFIC{dimer}:0.754033857862;ZNF423:0.748703294938;KLF4:0.740733319254;PAX5:0.734497719607;GLI1..3:0.70711404082;ZNF384:0.682187218849;PITX1..3:0.681982415327;RBPJ:0.672149374115;TOPORS:0.664290227836;GCM1,2:0.653494589304;LMO2:0.635429670296;DMAP1_NCOR{1,2}_SMARC:0.619843979697;GFI1B:0.616204720529;FOXA2:0.581385353441;CDC5L:0.572563068833;NKX2-1,4:0.570737997596;REST:0.51365822469;BREu{core}:0.513378687311;NANOG:0.505067084883;ZFP161:0.503443049801;TBX4,5:0.479670834272;ESR1:0.477763227168;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.445436194414;TLX2:0.441731245489;AIRE:0.43723950399;GZF1:0.429957972387;STAT2,4,6:0.42871658779;ETS1,2:0.419707345702;NR5A1,2:0.404890749786;RXR{A,B,G}:0.398015363059;HBP1_HMGB_SSRP1_UBTF:0.38216244883;SMAD1..7,9:0.366898228539;FOXQ1:0.346184291509;NHLH1,2:0.303458841284;NKX6-1,2:0.296673129856;ZBTB16:0.29397817605;MYOD1:0.283713574434;ONECUT1,2:0.274304394335;LEF1_TCF7_TCF7L1,2:0.270652991381;IRF1,2:0.266366385871;PRRX1,2:0.264860811124;SREBF1,2:0.262662889797;FOXN1:0.250024411737;POU1F1:0.244389866355;TEAD1:0.238992918624;IRF7:0.236491033827;GFI1:0.222604034826;VSX1,2:0.208263903414;AR:0.177607199101;NANOG{mouse}:0.175305862636;OCT4_SOX2{dimer}:0.149752044949;GTF2A1,2:0.132352578058;TAL1_TCF{3,4,12}:0.129024875331;ATF2:0.124985083456;SPIB:0.11559387634;ATF4:0.0800809538856;MEF2{A,B,C,D}:0.0421905176269;EBF1:0.0397754858405;NKX2-2,8:0.038648093772;SPI1:0.0336800546134;ESRRA:0.0333479047093;NFATC1..3:-0.00630082737492;ARID5B:-0.00711431547617;ALX1:-0.00923576333128;CUX2:-0.022683158711;UFEwm:-0.0257256273908;STAT1,3:-0.0355782880885;ZBTB6:-0.0363911857766;HES1:-0.0657018756698;FOXP3:-0.0692220927696;SOX2:-0.0957178462632;MAFB:-0.102120632227;POU3F1..4:-0.102933697343;SOX17:-0.120676517407;RXRA_VDR{dimer}:-0.126436122184;POU2F1..3:-0.143264600463;IKZF1:-0.153465641654;CEBPA,B_DDIT3:-0.161090152309;SOX{8,9,10}:-0.182672154111;XBP1:-0.195369062919;RUNX1..3:-0.198735117386;HIF1A:-0.216720428499;ZIC1..3:-0.222411461719;TEF:-0.225369420059;bHLH_family:-0.242763111492;JUN:-0.251132671656;PAX2:-0.255735136584;ZNF238:-0.258133705221;LHX3,4:-0.291154964671;EVI1:-0.309668459;NFKB1_REL_RELA:-0.310313010291;PAX3,7:-0.351176652554;PBX1:-0.393671611483;TGIF1:-0.397953113667;ATF5_CREB3:-0.41646889202;HAND1,2:-0.425530577145;NFIL3:-0.464178212362;ZNF143:-0.478702295528;HLF:-0.479798578914;AHR_ARNT_ARNT2:-0.49893173281;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.50071967433;NFY{A,B,C}:-0.510441157692;FOSL2:-0.527330361871;NFIX:-0.561732019343;NFE2:-0.57686197585;ELF1,2,4:-0.581119500071;PPARG:-0.598214190793;NKX3-2:-0.604446657392;TFDP1:-0.611835991344;TP53:-0.615621654441;E2F1..5:-0.61594453459;CREB1:-0.625413055861;PDX1:-0.643677795292;RFX2..5_RFXANK_RFXAP:-0.676266140636;HOX{A4,D4}:-0.727175040251;FOS_FOS{B,L1}_JUN{B,D}:-0.759227175839;RFX1:-0.80487324359;NKX3-1:-0.844638067187;RORA:-0.844941402991;NRF1:-0.891548501044;CRX:-0.912743834992;NFE2L2:-0.973630430761;BACH2:-0.982125399229;HOX{A5,B5}:-1.07338808665;NFE2L1:-1.12924024331;PAX4:-1.19051072024;ALX4:-1.19693081161;HSF1,2:-1.2863252534;PAX1,9:-1.2864108292;MYB:-1.33801535546;STAT5{A,B}:-1.33862796405;EN1,2:-1.33943718228;HOXA9_MEIS1:-1.50050341398;YY1:-1.6560357995;ELK1,4_GABP{A,B1}:-1.67527325961;PAX8:-2.01552186177
|top_motifs=HNF4A_NR2F1,2:4.23213585725;HNF1A:3.66884520747;FOXD3:2.92721141115;DBP:2.84435762306;MTF1:2.81686810515;T:2.61933567985;FOXL1:2.58024244692;IKZF2:2.15092046023;SRF:2.14168067706;TBP:2.12472495717;MYBL2:2.08668101871;SPZ1:2.0599219404;XCPE1{core}:1.99725479595;SNAI1..3:1.96979491823;SP1:1.90238550067;PRDM1:1.89061090688;MAZ:1.87940120276;TFCP2:1.8553722361;NKX2-3_NKX2-5:1.81415899514;ZEB1:1.78904647683;FOXP1:1.78685258251;MTE{core}:1.74624593916;POU5F1:1.73557120817;FOX{D1,D2}:1.72386018613;HOX{A6,A7,B6,B7}:1.70894389693;FOXO1,3,4:1.66219272129;MZF1:1.5851454858;PATZ1:1.55926687621;BPTF:1.49623422813;NR6A1:1.48900555928;GATA6:1.47894814979;EP300:1.43587610272;NR1H4:1.40816470151;TFAP2{A,C}:1.40513847116;HIC1:1.31105079078;MED-1{core}:1.30463449407;TFAP2B:1.29705018936;POU6F1:1.28187940821;ZNF148:1.22778671672;GTF2I:1.2242285745;PAX6:1.21775999506;GATA4:1.21279719842;FOXM1:1.18084071155;FOX{F1,F2,J1}:1.13621634746;MYFfamily:1.13231817325;ATF6:1.08443081382;CDX1,2,4:0.980958589194;FOX{I1,J2}:0.977353080066;HMX1:0.951260868394;NR3C1:0.915552555352;TFAP4:0.875596755923;SOX5:0.871518726484;HMGA1,2:0.864941462929;EGR1..3:0.853071321553;RREB1:0.830396714929;ADNP_IRX_SIX_ZHX:0.76746501804;TLX1..3_NFIC{dimer}:0.754033857862;ZNF423:0.748703294938;KLF4:0.740733319254;PAX5:0.734497719607;GLI1..3:0.70711404082;ZNF384:0.682187218849;PITX1..3:0.681982415327;RBPJ:0.672149374115;TOPORS:0.664290227836;GCM1,2:0.653494589304;LMO2:0.635429670296;DMAP1_NCOR{1,2}_SMARC:0.619843979697;GFI1B:0.616204720529;FOXA2:0.581385353441;CDC5L:0.572563068833;NKX2-1,4:0.570737997596;REST:0.51365822469;BREu{core}:0.513378687311;NANOG:0.505067084883;ZFP161:0.503443049801;TBX4,5:0.479670834272;ESR1:0.477763227168;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.445436194414;TLX2:0.441731245489;AIRE:0.43723950399;GZF1:0.429957972387;STAT2,4,6:0.42871658779;ETS1,2:0.419707345702;NR5A1,2:0.404890749786;RXR{A,B,G}:0.398015363059;HBP1_HMGB_SSRP1_UBTF:0.38216244883;SMAD1..7,9:0.366898228539;FOXQ1:0.346184291509;NHLH1,2:0.303458841284;NKX6-1,2:0.296673129856;ZBTB16:0.29397817605;MYOD1:0.283713574434;ONECUT1,2:0.274304394335;LEF1_TCF7_TCF7L1,2:0.270652991381;IRF1,2:0.266366385871;PRRX1,2:0.264860811124;SREBF1,2:0.262662889797;FOXN1:0.250024411737;POU1F1:0.244389866355;TEAD1:0.238992918624;IRF7:0.236491033827;GFI1:0.222604034826;VSX1,2:0.208263903414;AR:0.177607199101;NANOG{mouse}:0.175305862636;OCT4_SOX2{dimer}:0.149752044949;GTF2A1,2:0.132352578058;TAL1_TCF{3,4,12}:0.129024875331;ATF2:0.124985083456;SPIB:0.11559387634;ATF4:0.0800809538856;MEF2{A,B,C,D}:0.0421905176269;EBF1:0.0397754858405;NKX2-2,8:0.038648093772;SPI1:0.0336800546134;ESRRA:0.0333479047093;NFATC1..3:-0.00630082737492;ARID5B:-0.00711431547617;ALX1:-0.00923576333128;CUX2:-0.022683158711;UFEwm:-0.0257256273908;STAT1,3:-0.0355782880885;ZBTB6:-0.0363911857766;HES1:-0.0657018756698;FOXP3:-0.0692220927696;SOX2:-0.0957178462632;MAFB:-0.102120632227;POU3F1..4:-0.102933697343;SOX17:-0.120676517407;RXRA_VDR{dimer}:-0.126436122184;POU2F1..3:-0.143264600463;IKZF1:-0.153465641654;CEBPA,B_DDIT3:-0.161090152309;SOX{8,9,10}:-0.182672154111;XBP1:-0.195369062919;RUNX1..3:-0.198735117386;HIF1A:-0.216720428499;ZIC1..3:-0.222411461719;TEF:-0.225369420059;bHLH_family:-0.242763111492;JUN:-0.251132671656;PAX2:-0.255735136584;ZNF238:-0.258133705221;LHX3,4:-0.291154964671;EVI1:-0.309668459;NFKB1_REL_RELA:-0.310313010291;PAX3,7:-0.351176652554;PBX1:-0.393671611483;TGIF1:-0.397953113667;ATF5_CREB3:-0.41646889202;HAND1,2:-0.425530577145;NFIL3:-0.464178212362;ZNF143:-0.478702295528;HLF:-0.479798578914;AHR_ARNT_ARNT2:-0.49893173281;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.50071967433;NFY{A,B,C}:-0.510441157692;FOSL2:-0.527330361871;NFIX:-0.561732019343;NFE2:-0.57686197585;ELF1,2,4:-0.581119500071;PPARG:-0.598214190793;NKX3-2:-0.604446657392;TFDP1:-0.611835991344;TP53:-0.615621654441;E2F1..5:-0.61594453459;CREB1:-0.625413055861;PDX1:-0.643677795292;RFX2..5_RFXANK_RFXAP:-0.676266140636;HOX{A4,D4}:-0.727175040251;FOS_FOS{B,L1}_JUN{B,D}:-0.759227175839;RFX1:-0.80487324359;NKX3-1:-0.844638067187;RORA:-0.844941402991;NRF1:-0.891548501044;CRX:-0.912743834992;NFE2L2:-0.973630430761;BACH2:-0.982125399229;HOX{A5,B5}:-1.07338808665;NFE2L1:-1.12924024331;PAX4:-1.19051072024;ALX4:-1.19693081161;HSF1,2:-1.2863252534;PAX1,9:-1.2864108292;MYB:-1.33801535546;STAT5{A,B}:-1.33862796405;EN1,2:-1.33943718228;HOXA9_MEIS1:-1.50050341398;YY1:-1.6560357995;ELK1,4_GABP{A,B1}:-1.67527325961;PAX8:-2.01552186177
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10070-101I7;search_select_hide=table117:FF:10070-101I7
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:colon, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11780
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stage37 weeks fetus
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB207218
catalog numberCat:RtHFN: Colon
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005845
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11780 CAGE DRX008639 DRR009511
Accession ID Hg19

Library idBAMCTSS
CNhs11780 DRZ000936 DRZ002321
Accession ID Hg38

Library idBAMCTSS
CNhs11780 DRZ012286 DRZ013671
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0686
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0.207
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.452
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0378
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.207
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral1.258
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.207
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.888
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.347
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.104
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.207
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.207
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.111
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.195
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.381
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0.207
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.452
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.207
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.169
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.207
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.537
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.207
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.495
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.537
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.207
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.347
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11780

Jaspar motifP-value
MA0002.20.0127
MA0003.10.35
MA0004.10.0856
MA0006.10.221
MA0007.10.451
MA0009.10.879
MA0014.10.547
MA0017.11.5072e-5
MA0018.20.342
MA0019.10.844
MA0024.10.362
MA0025.10.484
MA0027.10.954
MA0028.16.85983e-8
MA0029.10.46
MA0030.10.00988
MA0031.10.0133
MA0035.20.581
MA0038.10.391
MA0039.20.252
MA0040.10.786
MA0041.10.468
MA0042.10.664
MA0043.10.0234
MA0046.11.78773e-41
MA0047.20.00948
MA0048.10.0701
MA0050.10.579
MA0051.10.657
MA0052.10.91
MA0055.13.95214e-4
MA0057.10.998
MA0058.10.0366
MA0059.10.00134
MA0060.10.0256
MA0061.13.59909e-4
MA0062.22.14524e-11
MA0065.20.849
MA0066.10.0572
MA0067.10.0808
MA0068.10.00229
MA0069.10.389
MA0070.10.313
MA0071.10.247
MA0072.10.0488
MA0073.10.443
MA0074.10.831
MA0076.11.8053e-9
MA0077.10.634
MA0078.10.161
MA0079.20.316
MA0080.20.16
MA0081.10.0234
MA0083.18.20716e-4
MA0084.10.633
MA0087.10.067
MA0088.10.0153
MA0090.10.765
MA0091.10.811
MA0092.10.787
MA0093.10.0708
MA0099.22.1391e-19
MA0100.10.0639
MA0101.18.72678e-4
MA0102.20.851
MA0103.10.0106
MA0104.29.87157e-5
MA0105.12.33739e-7
MA0106.10.00218
MA0107.10.0014
MA0108.22.93257e-13
MA0111.10.449
MA0112.20.0711
MA0113.10.67
MA0114.10.00149
MA0115.10.188
MA0116.10.00318
MA0117.10.138
MA0119.10.621
MA0122.10.772
MA0124.10.972
MA0125.10.496
MA0131.10.225
MA0135.10.388
MA0136.16.60742e-4
MA0137.20.987
MA0138.20.536
MA0139.10.158
MA0140.10.728
MA0141.10.505
MA0142.10.232
MA0143.10.505
MA0144.10.731
MA0145.10.478
MA0146.10.453
MA0147.12.76096e-5
MA0148.10.00803
MA0149.10.0316
MA0150.11.7347e-7
MA0152.10.534
MA0153.12.81148e-20
MA0154.10.0438
MA0155.10.705
MA0156.12.00953e-4
MA0157.10.561
MA0159.10.255
MA0160.10.184
MA0162.10.701
MA0163.13.12226e-6
MA0164.10.16
MA0258.10.201
MA0259.10.0926



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11780

Novel motifP-value
10.0344
100.0573
1000.198
1010.897
1020.252
1030.156
1040.818
1050.318
1060.597
1070.0584
1080.217
1090.0318
110.24
1100.0642
1110.00993
1120.935
1130.0202
1140.00823
1150.396
1160.932
1170.0139
1180.558
1190.916
120.645
1200.392
1210.298
1220.756
1230.688
1240.962
1250.05
1260.749
1270.0791
1280.042
1290.94
130.0902
1300.932
1310.786
1320.0421
1330.264
1340.342
1350.563
1360.265
1370.291
1380.88
1390.16
140.924
1400.612
1410.126
1420.506
1430.0268
1440.906
1450.649
1460.178
1470.599
1480.581
1490.747
150.0467
1500.748
1510.864
1520.445
1530.723
1540.658
1550.708
1560.832
1570.944
1580.203
1590.93
160.337
1600.675
1610.363
1620.143
1630.55
1640.229
1650.923
1660.104
1670.0477
1680.534
1690.346
170.804
180.00235
190.539
20.0728
200.11
210.256
220.679
230.431
240.257
250.592
260.295
270.847
280.819
290.0146
30.443
300.0352
310.902
320.0135
330.112
340.26
350.115
360.0335
370.0665
380.835
390.341
40.436
400.237
410.208
420.232
430.366
440.943
450.425
460.156
470.167
480.303
490.229
50.626
500.374
510.916
520.0912
530.43
540.874
550.192
560.874
570.206
580.648
590.851
60.912
600.441
610.546
620.755
630.889
640.535
650.887
660.0161
670.12
680.765
690.954
70.399
700.133
710.0508
720.567
730.156
740.199
750.00283
760.192
770.485
780.646
790.667
80.246
800.832
810.765
820.43
830.246
840.723
850.264
860.178
870.0738
880.852
890.409
90.615
900.137
910.339
920.845
930.0657
940.0238
950.0109
960.836
970.552
980.121
990.132



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11780


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010070 (human colon - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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