FF:10198-103E9: Difference between revisions

Latest revision as of 13:55, 3 June 2020

Name:	gall bladder, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12848
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	57
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234118-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005041

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12848		CAGE		DRX008657		DRR009529

Accession ID Hg19

Library id		BAM		CTSS
CNhs12848		DRZ000954		DRZ002339

Accession ID Hg38

Library id		BAM		CTSS
CNhs12848		DRZ012304		DRZ013689

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0756
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.281
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0227
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.315
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0141
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.084
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.084
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.146
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.084
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0189
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.215
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.084
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.315
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.261
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.0172
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.154
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.863
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.084
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.26
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.154
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.084
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0.415
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.084
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.35
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.314
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.397
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.665
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.154
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.084
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0259
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.215
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0103
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0531
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.381
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0407
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.154
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.315
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.084
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.084
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.215
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.084
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.084
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0168
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.764
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.466
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.23
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.154
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.084
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12848

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.618
MA0003.1	MA0003.1	0.12
MA0004.1	MA0004.1	0.0856
MA0006.1	MA0006.1	0.141
MA0007.1	MA0007.1	0.952
MA0009.1	MA0009.1	0.27
MA0014.1	MA0014.1	0.467
MA0017.1	MA0017.1	0.0298
MA0018.2	MA0018.2	0.864
MA0019.1	MA0019.1	0.0349
MA0024.1	MA0024.1	0.00661
MA0025.1	MA0025.1	0.326
MA0027.1	MA0027.1	0.682
MA0028.1	MA0028.1	4.57281e-4
MA0029.1	MA0029.1	0.755
MA0030.1	MA0030.1	5.63764e-4
MA0031.1	MA0031.1	0.0764
MA0035.2	MA0035.2	0.159
MA0038.1	MA0038.1	0.218
MA0039.2	MA0039.2	0.677
MA0040.1	MA0040.1	0.737
MA0041.1	MA0041.1	0.073
MA0042.1	MA0042.1	0.497
MA0043.1	MA0043.1	0.399
MA0046.1	MA0046.1	1.93065e-33
MA0047.2	MA0047.2	2.95156e-4
MA0048.1	MA0048.1	0.0696
MA0050.1	MA0050.1	0.33
MA0051.1	MA0051.1	0.638
MA0052.1	MA0052.1	0.00479
MA0055.1	MA0055.1	0.00239
MA0057.1	MA0057.1	0.608
MA0058.1	MA0058.1	0.0515
MA0059.1	MA0059.1	0.00394
MA0060.1	MA0060.1	0.0497
MA0061.1	MA0061.1	0.002
MA0062.2	MA0062.2	1.24653e-4
MA0065.2	MA0065.2	0.96
MA0066.1	MA0066.1	0.0166
MA0067.1	MA0067.1	0.148
MA0068.1	MA0068.1	0.164
MA0069.1	MA0069.1	0.652
MA0070.1	MA0070.1	0.666
MA0071.1	MA0071.1	0.232
MA0072.1	MA0072.1	0.0737
MA0073.1	MA0073.1	0.811
MA0074.1	MA0074.1	0.426
MA0076.1	MA0076.1	3.5479e-4
MA0077.1	MA0077.1	0.946
MA0078.1	MA0078.1	0.298
MA0079.2	MA0079.2	0.0731
MA0080.2	MA0080.2	0.338
MA0081.1	MA0081.1	0.0965
MA0083.1	MA0083.1	8.41672e-6
MA0084.1	MA0084.1	0.806
MA0087.1	MA0087.1	0.114
MA0088.1	MA0088.1	0.0442
MA0090.1	MA0090.1	0.0686
MA0091.1	MA0091.1	0.613
MA0092.1	MA0092.1	0.749
MA0093.1	MA0093.1	0.115
MA0099.2	MA0099.2	1.15516e-9
MA0100.1	MA0100.1	0.039
MA0101.1	MA0101.1	0.00973
MA0102.2	MA0102.2	0.707
MA0103.1	MA0103.1	0.0338
MA0104.2	MA0104.2	0.00109
MA0105.1	MA0105.1	2.8215e-5
MA0106.1	MA0106.1	0.112
MA0107.1	MA0107.1	0.0101
MA0108.2	MA0108.2	7.73109e-15
MA0111.1	MA0111.1	0.629
MA0112.2	MA0112.2	0.568
MA0113.1	MA0113.1	0.587
MA0114.1	MA0114.1	0.282
MA0115.1	MA0115.1	0.992
MA0116.1	MA0116.1	0.00422
MA0117.1	MA0117.1	0.292
MA0119.1	MA0119.1	0.613
MA0122.1	MA0122.1	0.591
MA0124.1	MA0124.1	0.938
MA0125.1	MA0125.1	0.99
MA0131.1	MA0131.1	0.217
MA0135.1	MA0135.1	0.119
MA0136.1	MA0136.1	0.493
MA0137.2	MA0137.2	0.155
MA0138.2	MA0138.2	0.0412
MA0139.1	MA0139.1	0.687
MA0140.1	MA0140.1	0.284
MA0141.1	MA0141.1	0.334
MA0142.1	MA0142.1	0.0756
MA0143.1	MA0143.1	0.0819
MA0144.1	MA0144.1	0.0502
MA0145.1	MA0145.1	0.0554
MA0146.1	MA0146.1	0.914
MA0147.1	MA0147.1	5.7836e-4
MA0148.1	MA0148.1	1.83981e-4
MA0149.1	MA0149.1	0.165
MA0150.1	MA0150.1	1.02321e-4
MA0152.1	MA0152.1	0.976
MA0153.1	MA0153.1	1.57411e-19
MA0154.1	MA0154.1	0.273
MA0155.1	MA0155.1	0.262
MA0156.1	MA0156.1	0.0763
MA0157.1	MA0157.1	0.884
MA0159.1	MA0159.1	0.281
MA0160.1	MA0160.1	0.947
MA0162.1	MA0162.1	0.75
MA0163.1	MA0163.1	8.60988e-5
MA0164.1	MA0164.1	0.265
MA0258.1	MA0258.1	0.447
MA0259.1	MA0259.1	0.0205

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12848

Novel motif	Logo	P-value
1	1	0.045
10	10	0.0466
100	100	0.178
101	101	0.205
102	102	0.325
103	103	0.136
104	104	0.955
105	105	0.674
106	106	0.566
107	107	0.118
108	108	0.872
109	109	0.41
11	11	0.27
110	110	0.215
111	111	0.0175
112	112	0.76
113	113	0.831
114	114	0.126
115	115	0.554
116	116	0.737
117	117	0.0319
118	118	0.131
119	119	0.921
12	12	0.817
120	120	0.0778
121	121	0.83
122	122	0.808
123	123	0.0794
124	124	0.171
125	125	0.0166
126	126	0.967
127	127	0.275
128	128	0.192
129	129	0.29
13	13	0.0411
130	130	0.898
131	131	0.317
132	132	0.0443
133	133	0.0618
134	134	0.044
135	135	0.399
136	136	0.829
137	137	0.487
138	138	0.948
139	139	0.244
14	14	0.946
140	140	0.202
141	141	0.169
142	142	0.715
143	143	0.0291
144	144	0.853
145	145	0.508
146	146	0.94
147	147	0.763
148	148	0.427
149	149	0.187
15	15	0.119
150	150	0.777
151	151	0.369
152	152	0.0487
153	153	0.555
154	154	0.552
155	155	0.761
156	156	0.75
157	157	0.727
158	158	0.44
159	159	0.443
16	16	0.367
160	160	0.833
161	161	0.276
162	162	0.915
163	163	0.703
164	164	0.1
165	165	0.92
166	166	0.39
167	167	0.032
168	168	0.405
169	169	0.339
17	17	0.944
18	18	0.0136
19	19	0.387
2	2	0.021
20	20	0.0774
21	21	0.214
22	22	0.643
23	23	0.402
24	24	0.43
25	25	0.367
26	26	0.544
27	27	0.574
28	28	0.588
29	29	0.0315
3	3	0.112
30	30	0.0258
31	31	0.881
32	32	0.344
33	33	0.422
34	34	0.264
35	35	0.398
36	36	0.0237
37	37	0.481
38	38	0.987
39	39	0.385
4	4	0.348
40	40	0.163
41	41	0.036
42	42	0.153
43	43	0.349
44	44	0.984
45	45	0.199
46	46	0.194
47	47	0.171
48	48	0.28
49	49	0.094
5	5	0.263
50	50	0.47
51	51	0.849
52	52	0.149
53	53	0.831
54	54	0.951
55	55	0.678
56	56	0.694
57	57	0.0636
58	58	0.733
59	59	0.589
6	6	0.473
60	60	0.48
61	61	0.866
62	62	0.456
63	63	0.97
64	64	0.464
65	65	0.677
66	66	0.00977
67	67	0.276
68	68	0.412
69	69	0.816
7	7	0.515
70	70	0.138
71	71	0.0279
72	72	0.855
73	73	0.961
74	74	0.611
75	75	0.0147
76	76	0.0149
77	77	0.0407
78	78	0.631
79	79	0.725
8	8	0.385
80	80	0.311
81	81	0.194
82	82	0.853
83	83	0.942
84	84	0.994
85	85	0.396
86	86	0.787
87	87	0.844
88	88	0.991
89	89	0.463
9	9	0.387
90	90	0.0118
91	91	0.92
92	92	0.895
93	93	0.0763
94	94	0.00482
95	95	0.15
96	96	0.204
97	97	0.872
98	98	0.108
99	99	0.125

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12848

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010198 human gall bladder - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002110 (gallbladder)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010198 (human gall bladder - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0006242 (gall bladder primordium)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005041
-|accession_numbers=CAGE;DRX008657;DRR009529;DRZ000954;DRZ002339
+|accession_numbers=CAGE;DRX008657;DRR009529;DRZ000954;DRZ002339;DRZ012304;DRZ013689
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002110,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.21!160.09!HAND2;;chr1:201979743..201979762,+!p1@ELF3!2.16!142.59!ELF3;;chr16:86544113..86544145,+!p1@FOXF1!1.95!107.79!FOXF1;;chr11:34642612..34642646,+!p1@EHF!1.95!88.58!EHF;;chr15:53082521..53082549,-!p1@ONECUT1!1.91!79.83!ONECUT1;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.14!ELF3;;chr17:36105042..36105060,-!p1@HNF1B!1.85!69.80!HNF1B;;chr7:35293685..35293718,-!p1@TBX20!1.85!69.16!TBX20;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr11:61520075..61520136,+!p1@C11orf9!1.79!123.59!C11orf9;;chr18:55102628..55102646,+!p2@ONECUT2!1.79!60.62!ONECUT2;;chr6:1312325..1312340,+!p1@FOXQ1!1.75!87.73!FOXQ1;;chr6:134210243..134210257,+!p1@TCF21!1.75!54.86!TCF21;;chr20:62680984..62680999,-!p1@SOX18!1.73!68.95!SOX18;;chr12:52445218..52445237,+!p1@NR4A1!1.72!617.73!NR4A1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.71!49.95!SEBOX;;chr8:55370487..55370503,+!p1@SOX17!1.67!46.11!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.67!45.47!HIF3A;;chr12:52437488..52437507,+!p2@NR4A1!1.63!41.62!NR4A1;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.77!GATA2;;chr1:40105299..40105326,-!p1@HEYL!1.60!38.85!HEYL;;chr13:72441315..72441454,-!p1@DACH1!1.58!72.36!DACH1;;chr4:174451350..174451363,-!p3@HAND2!1.58!37.35!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.58!36.93!HNF4G;;chr18:19749541..19749557,+!p1@GATA6!1.56!106.51!GATA6;;chr1:27240455..27240474,-!p1@NR0B2!1.54!33.73!NR0B2;;chr8:11561684..11561751,+!p1@GATA4!1.50!30.74!GATA4;;chr6:34524093..34524135,-!p1@SPDEF!1.50!30.52!SPDEF;;chr11:113930425..113930471,+!p1@ZBTB16!1.43!36.71!ZBTB16;;chr18:55102806..55102847,+!p3@ONECUT2!1.41!24.55!ONECUT2;;chr20:42984330..42984364,+!p2@HNF4A!1.40!24.12!HNF4A;;chr20:61051039..61051057,-!p1@GATA5!1.38!22.84!GATA5;;chr20:50179368..50179392,-!p2@NFATC2!1.37!28.82!NFATC2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.37!22.63!TFCP2L1;;chr22:41763452..41763466,+!p2@TEF!1.36!21.77!TEF;;chr14:75745523..75745537,+!p1@FOS!1.35!2467.09!FOS;;chr13:73633131..73633149,+!p1@KLF5!1.35!221.14!KLF5;;chr17:53342311..53342400,+!p1@HLF!1.35!24.55!HLF;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.13!KDM5D;;chr19:54058073..54058088,+!p1@ZNF331!1.34!20.70!ZNF331;;chr1:209979467..209979494,-!p1@IRF6!1.31!21.99!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.31!19.42!ERG;;chr19:45971246..45971265,+!p1@FOSB!1.30!341.31!FOSB;;chr9:77112244..77112262,+!p1@RORB!1.30!21.13!RORB;;chr12:26277956..26277980,-!p1@BHLHE41!1.29!65.96!BHLHE41;;chr19:46367576..46367592,+!p1@FOXA3!1.29!18.57!FOXA3;;chr2:157189180..157189290,-!p1@NR4A2!1.28!92.00!NR4A2;;chr11:46299199..46299233,+!p1@CREB3L1!1.27!89.01!CREB3L1;;chr14:75746722..75746777,+!p2@FOS!1.27!22.41!FOS;;chr18:45663490..45663528,-!p2@ZBTB7C!1.27!17.50!ZBTB7C;;chr16:85932760..85932775,+!p1@IRF8!1.26!17.08!IRF8;;chr18:19749386..19749404,+!p2@GATA6!1.24!23.48!GATA6;;chr19:1753498..1753519,+!p1@ONECUT3!1.23!16.01!ONECUT3;;chr19:54041669..54041697,+!p2@ZNF331!1.22!15.58!ZNF331;;chr7:44143925..44143970,+!p1@AEBP1!1.20!321.89!AEBP1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.18!14.30!SEBOX;;chr11:47400078..47400106,-!p1@SPI1!1.18!14.09!SPI1;;chr8:102504651..102504683,+!p1@GRHL2!1.17!13.66!GRHL2;;chr18:19749517..19749531,+!p3@GATA6!1.16!23.91!GATA6;;chr3:119500941..119500961,+!p1@NR1I2!1.16!13.45!NR1I2;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.02!HAND2;;chr16:79634624..79634642,-!p1@MAF!1.13!49.09!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.13!16.65!TSHZ2;;chr1:2985760..2985774,+!p1@PRDM16!1.13!12.59!PRDM16;;chr18:55102959..55102985,+!p6@ONECUT2!1.13!12.59!ONECUT2;;chr15:96873984..96873999,+!p3@NR2F2!1.12!89.22!NR2F2;;chr2:145277882..145277967,-!p3@ZEB2!1.12!21.13!ZEB2;;chr7:73038839..73038862,-!p1@MLXIPL!1.11!11.95!MLXIPL;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.53!SEBOX;;chr5:137801160..137801176,+!p1@EGR1!1.09!1117.21!EGR1;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.40!NR4A3;;chr7:44143978..44143989,+!p2@AEBP1!1.06!19.21!AEBP1;;chr20:50159198..50159299,-!p1@NFATC2!1.06!15.58!NFATC2;;chr20:22564895..22564910,-!p1@FOXA2!1.06!10.46!FOXA2;;chr22:38380543..38380569,-!p1@SOX10!1.06!10.46!SOX10;;chr12:52448338..52448401,+!p7@NR4A1!1.06!10.46!NR4A1;;chr1:164528410..164528428,+!p1@PBX1!1.04!75.56!PBX1;;chr3:12330560..12330579,+!p1@PPARG!1.04!11.53!PPARG;;chr5:122424918..122424944,+!p1@PRDM6!1.04!10.03!PRDM6;;chr5:122424955..122424988,+!p2@PRDM6!1.03!9.82!PRDM6;;chr20:30433396..30433414,-!p1@FOXS1!1.03!9.82!FOXS1;;chr10:101292684..101292706,+!p1@NKX2-3!1.03!9.82!NKX2-3;;chr11:34642656..34642667,+!p2@EHF!1.03!9.61!EHF;;chr16:73093174..73093209,-!p3@ZFHX3!1.02!13.02!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!1.01!10.25!NR2F2;;chr9:102584159..102584174,+!p2@NR4A3!1.00!16.44!NR4A3;;chr12:26277929..26277955,-!p3@BHLHE41!1.00!12.81!BHLHE41;;chr1:214161272..214161322,+!p1@PROX1!1.00!12.81!PROX1;;chr6:126070769..126070801,+!p1@HEY2!1.00!10.46!HEY2;;chr6:391743..391759,+!p1@IRF4!1.00!8.97!IRF4;;chr11:129245526..129245553,+!p1@BARX2!1.00!8.97!BARX2;;chr8:10588010..10588030,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002294;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0006242,UBERON:0009497,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10198-103E9
 |is_a=EFO:0002091;;FF:0010198
 |is_obsolete=
 |library_id=CNhs12848
-|library_id_phase_based=1:CNhs12848
+|library_id_phase_based=2:CNhs12848
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10198
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10198
 |name=gall bladder, adult
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12848,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 65: / Line 76: @@
 |rna_rin=
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 |sample_age=57
@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10198-103E9;search_select_hide=table117:FF:10198-103E9
 }}

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FF:10198-103E9: Difference between revisions

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Latest revision as of 13:55, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0