FF:10831-111D3: Difference between revisions

Latest revision as of 15:08, 3 June 2020

Name:	acute myeloid leukemia (FAB M4) cell line:HNT-34
Species:	Human (Homo sapiens)
Library ID:	CNhs13504
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	45
cell type	myeloid progenitor cell
cell line	HNT-34
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005714

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13504		CAGE		DRX007808		DRR008680

Accession ID Hg19

Library id		BAM		CTSS
CNhs13504		DRZ000105		DRZ001490

Accession ID Hg38

Library id		BAM		CTSS
CNhs13504		DRZ011455		DRZ012840

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.292
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.532
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00463
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0679
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0679
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.0164
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.499
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.279
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.796
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.741
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.524
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.225
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13504

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0669
MA0003.1	MA0003.1	0.998
MA0004.1	MA0004.1	0.339
MA0006.1	MA0006.1	0.365
MA0007.1	MA0007.1	0.936
MA0009.1	MA0009.1	0.0518
MA0014.1	MA0014.1	0.343
MA0017.1	MA0017.1	0.0451
MA0018.2	MA0018.2	9.05474e-5
MA0019.1	MA0019.1	0.0596
MA0024.1	MA0024.1	1.83709e-7
MA0025.1	MA0025.1	0.0169
MA0027.1	MA0027.1	0.0743
MA0028.1	MA0028.1	0.00999
MA0029.1	MA0029.1	0.742
MA0030.1	MA0030.1	0.0115
MA0031.1	MA0031.1	0.598
MA0035.2	MA0035.2	0.00428
MA0038.1	MA0038.1	6.01317e-4
MA0039.2	MA0039.2	0.103
MA0040.1	MA0040.1	0.635
MA0041.1	MA0041.1	0.0958
MA0042.1	MA0042.1	0.197
MA0043.1	MA0043.1	0.00302
MA0046.1	MA0046.1	0.107
MA0047.2	MA0047.2	0.54
MA0048.1	MA0048.1	0.226
MA0050.1	MA0050.1	0.956
MA0051.1	MA0051.1	0.265
MA0052.1	MA0052.1	0.00671
MA0055.1	MA0055.1	0.0986
MA0057.1	MA0057.1	0.669
MA0058.1	MA0058.1	0.287
MA0059.1	MA0059.1	0.0106
MA0060.1	MA0060.1	0.0791
MA0061.1	MA0061.1	0.595
MA0062.2	MA0062.2	1.59708e-5
MA0065.2	MA0065.2	0.00348
MA0066.1	MA0066.1	0.405
MA0067.1	MA0067.1	0.258
MA0068.1	MA0068.1	0.395
MA0069.1	MA0069.1	0.193
MA0070.1	MA0070.1	0.979
MA0071.1	MA0071.1	0.118
MA0072.1	MA0072.1	0.217
MA0073.1	MA0073.1	0.696
MA0074.1	MA0074.1	0.656
MA0076.1	MA0076.1	0.0131
MA0077.1	MA0077.1	0.655
MA0078.1	MA0078.1	0.573
MA0079.2	MA0079.2	0.233
MA0080.2	MA0080.2	4.00589e-9
MA0081.1	MA0081.1	0.00212
MA0083.1	MA0083.1	2.46969e-5
MA0084.1	MA0084.1	0.829
MA0087.1	MA0087.1	0.446
MA0088.1	MA0088.1	0.00585
MA0090.1	MA0090.1	0.00113
MA0091.1	MA0091.1	0.884
MA0092.1	MA0092.1	0.909
MA0093.1	MA0093.1	0.336
MA0099.2	MA0099.2	1.08416e-8
MA0100.1	MA0100.1	0.0551
MA0101.1	MA0101.1	0.502
MA0102.2	MA0102.2	1
MA0103.1	MA0103.1	0.236
MA0104.2	MA0104.2	0.00389
MA0105.1	MA0105.1	3.27321e-4
MA0106.1	MA0106.1	0.175
MA0107.1	MA0107.1	0.0589
MA0108.2	MA0108.2	7.00771e-11
MA0111.1	MA0111.1	0.224
MA0112.2	MA0112.2	0.114
MA0113.1	MA0113.1	0.85
MA0114.1	MA0114.1	0.11
MA0115.1	MA0115.1	0.169
MA0116.1	MA0116.1	2.86937e-5
MA0117.1	MA0117.1	0.54
MA0119.1	MA0119.1	0.482
MA0122.1	MA0122.1	0.948
MA0124.1	MA0124.1	0.879
MA0125.1	MA0125.1	0.615
MA0131.1	MA0131.1	0.418
MA0135.1	MA0135.1	0.783
MA0136.1	MA0136.1	1.25485e-10
MA0137.2	MA0137.2	0.0236
MA0138.2	MA0138.2	0.482
MA0139.1	MA0139.1	0.114
MA0140.1	MA0140.1	3.5509e-4
MA0141.1	MA0141.1	0.125
MA0142.1	MA0142.1	0.236
MA0143.1	MA0143.1	0.812
MA0144.1	MA0144.1	0.195
MA0145.1	MA0145.1	0.226
MA0146.1	MA0146.1	0.185
MA0147.1	MA0147.1	6.10664e-4
MA0148.1	MA0148.1	0.497
MA0149.1	MA0149.1	0.0997
MA0150.1	MA0150.1	0.0441
MA0152.1	MA0152.1	0.264
MA0153.1	MA0153.1	9.90581e-4
MA0154.1	MA0154.1	0.0226
MA0155.1	MA0155.1	0.976
MA0156.1	MA0156.1	4.04956e-7
MA0157.1	MA0157.1	0.724
MA0159.1	MA0159.1	0.53
MA0160.1	MA0160.1	0.144
MA0162.1	MA0162.1	0.72
MA0163.1	MA0163.1	6.26761e-13
MA0164.1	MA0164.1	0.665
MA0258.1	MA0258.1	0.096
MA0259.1	MA0259.1	0.166

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13504

Novel motif	Logo	P-value
1	1	0.073
10	10	0.046
100	100	0.789
101	101	0.276
102	102	0.488
103	103	0.0723
104	104	0.639
105	105	0.825
106	106	0.963
107	107	0.777
108	108	0.841
109	109	0.133
11	11	0.0846
110	110	0.198
111	111	0.0485
112	112	0.861
113	113	0.76
114	114	0.029
115	115	0.447
116	116	0.266
117	117	0.0441
118	118	0.0488
119	119	0.693
12	12	0.66
120	120	0.253
121	121	0.259
122	122	0.954
123	123	0.00826
124	124	0.0046
125	125	0.0888
126	126	0.218
127	127	0.136
128	128	0.947
129	129	0.0577
13	13	0.0114
130	130	0.683
131	131	0.384
132	132	0.883
133	133	0.878
134	134	0.577
135	135	0.621
136	136	0.146
137	137	0.636
138	138	0.3
139	139	0.496
14	14	0.801
140	140	0.191
141	141	0.124
142	142	0.414
143	143	0.305
144	144	0.564
145	145	0.119
146	146	0.917
147	147	0.0536
148	148	0.224
149	149	0.816
15	15	0.28
150	150	0.788
151	151	0.8
152	152	0.25
153	153	0.8
154	154	0.897
155	155	0.0951
156	156	0.72
157	157	0.216
158	158	0.707
159	159	0.698
16	16	0.455
160	160	0.049
161	161	0.00837
162	162	0.584
163	163	0.986
164	164	0.335
165	165	0.448
166	166	0.705
167	167	0.0827
168	168	0.873
169	169	0.409
17	17	0.824
18	18	0.733
19	19	0.811
2	2	0.76
20	20	0.761
21	21	0.23
22	22	0.743
23	23	0.0251
24	24	0.104
25	25	0.288
26	26	0.0584
27	27	0.537
28	28	0.84
29	29	0.0532
3	3	0.0878
30	30	0.333
31	31	0.672
32	32	0.0787
33	33	0.182
34	34	0.862
35	35	0.154
36	36	0.0515
37	37	0.17
38	38	0.499
39	39	0.562
4	4	0.172
40	40	0.291
41	41	0.822
42	42	0.129
43	43	0.484
44	44	0.12
45	45	0.801
46	46	0.072
47	47	0.0449
48	48	0.0541
49	49	0.183
5	5	0.863
50	50	0.815
51	51	0.687
52	52	0.379
53	53	0.523
54	54	0.751
55	55	0.323
56	56	0.525
57	57	0.0562
58	58	0.193
59	59	0.381
6	6	0.582
60	60	0.962
61	61	0.11
62	62	0.129
63	63	0.595
64	64	0.232
65	65	0.544
66	66	0.0826
67	67	0.897
68	68	0.837
69	69	0.494
7	7	0.0318
70	70	0.304
71	71	0.0147
72	72	0.893
73	73	0.773
74	74	0.987
75	75	0.032
76	76	0.426
77	77	0.972
78	78	0.00476
79	79	0.0656
8	8	0.0354
80	80	0.185
81	81	0.419
82	82	0.601
83	83	0.784
84	84	0.689
85	85	0.421
86	86	0.748
87	87	0.779
88	88	0.285
89	89	0.841
9	9	0.912
90	90	0.0456
91	91	0.74
92	92	0.888
93	93	0.968
94	94	0.961
95	95	0.0819
96	96	0.838
97	97	0.336
98	98	0.159
99	99	0.772

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13504

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007703
+|DRA_sample_Accession=CAGE@SAMD00005714
-|accession_numbers=CAGE;DRX007808;DRR008680;DRZ000105;DRZ001490
+|accession_numbers=CAGE;DRX007808;DRR008680;DRZ000105;DRZ001490;DRZ011455;DRZ012840
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!1.91!163.71!DNMT3B;;chr21:39870339..39870443,-!p1@ERG!1.89!75.84!ERG;;chr7:27205136..27205164,-!p1@HOXA9!1.88!74.83!HOXA9;;chr20:62680984..62680999,-!p1@SOX18!1.78!77.54!SOX18;;chr12:54694758..54694805,-!p1@NFE2!1.76!67.72!NFE2;;chr1:25291475..25291511,-!p2@RUNX3!1.74!54.17!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.35!SPI1;;chr2:16080659..16080685,+!p1@MYCN!1.64!42.32!MYCN;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.68!LYL1;;chr12:54694807..54694832,-!p3@NFE2!1.61!40.12!NFE2;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.43!PLEK;;chr9:135854091..135854159,+!p1@GFI1B!1.55!34.70!GFI1B;;chr6:135502501..135502546,+!p1@MYB!1.54!39.78!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.52!131.71!CEBPA;;chr12:54778471..54778528,-!p1@ZNF385A!1.48!29.29!ZNF385A;;chr17:40441354..40441410,+!p2@STAT5A!1.47!28.44!STAT5A;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.95!LYL1;;chr2:16082155..16082169,+!p3@MYCN!1.45!27.09!MYCN;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.95!ZNF385A;;chr5:88178983..88179012,-!p1@MEF2C!1.41!184.36!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.38!22.85!IKZF1;;chr12:96588368..96588394,+!p3@ELK3!1.35!56.20!ELK3;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.50!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.35!21.16!TFEC;;chr7:27213893..27213954,-!p1@HOXA10!1.33!20.32!HOXA10;;chr9:20382446..20382493,-!p4@MLLT3!1.33!20.15!MLLT3;;chr12:54785054..54785072,-!p4@ZNF385A!1.32!22.69!ZNF385A;;chr7:27205106..27205134,-!p2@HOXA9!1.32!19.81!HOXA9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!18.96!ZBED1;;chr4:57522598..57522664,-!p3@HOPX!1.30!18.96!HOPX;;chr11:47399947..47399961,-!p3@SPI1!1.30!18.79!SPI1;;chr6:15401104..15401166,+!p5@JARID2!1.28!17.94!JARID2;;chr4:57522513..57522548,-!p4@HOPX!1.27!17.78!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.24!35.38!TOX;;chr6:135502408..135502459,+!p2@MYB!1.24!18.96!MYB;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.42!HOXA3;;chr7:137620650..137620677,-!p3@CREB3L2!1.22!15.74!CREB3L2;;chr18:77155922..77155939,+!p1@NFATC1!1.20!39.95!NFATC1;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.81!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.15!80.92!GATA2;;chr14:75988771..75988826,+!p1@BATF!1.15!17.44!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.42!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.36!PLEK;;chr11:47400062..47400077,-!p2@SPI1!1.13!12.36!SPI1;;chr2:172949484..172949522,+!p1@DLX1!1.09!11.34!DLX1;;chr18:22932080..22932170,-!p1@ZNF521!1.06!44.52!ZNF521;;chr1:25256756..25256774,-!p1@RUNX3!1.06!19.64!RUNX3;;chr3:128212033..128212051,-!p1@GATA2!1.06!10.50!GATA2;;chr8:60031563..60031574,-!p7@TOX!1.06!10.50!TOX;;chr10:94449703..94449718,+!p1@HHEX!1.05!40.29!HHEX;;chr11:47279504..47279563,+!p1@NR1H3!1.05!23.36!NR1H3;;chr3:141747459..141747475,-!p1@TFDP2!1.04!84.98!TFDP2;;chr9:117150254..117150271,-!p1@AKNA!1.03!27.26!AKNA;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.81!ZNF788;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.20!ETV6;;chr3:168865194..168865245,-!p3@MECOM!1.02!12.36!MECOM;;chr16:88752861..88752884,-!p2@SNAI3!1.02!9.48!SNAI3;;chr2:25475120..25475176,-!p2@DNMT3A!1.01!12.70!DNMT3A;;chr7:50348268..50348366,+!p4@IKZF1!1.01!9.14!IKZF1;;chr5:88179017..88179046,-!p2@MEF2C!1.00!36.74!MEF2C;;chr2:66662281..66662308,+!p1@MEIS1!1.00!31.49!MEIS1;;chr1:3569072..3569093,+!p1@TP73!1.00!8.97!TP73;;chr8:60031534..60031553,-!p8@TOX!0.97!8.30!TOX;;chr2:60780607..60780624,-!p2@BCL11A!0.96!25.73!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!0.95!35.21!ETV4;;chr11:47400032..47400043,-!p5@SPI1!0.95!7.96!SPI1;;chr10:94449675..94449694,+!p2@HHEX!0.94!21.16!HHEX;;chr4:57522674..57522699,-!p5@HOPX!0.94!7.79!HOPX;;chr1:92951607..92951661,-!p1@GFI1!0.94!7.62!GFI1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.62!CREB3L2;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.70!ZNF492;;chr6:135502472..135502489,+!p3@MYB!0.93!7.45!MYB;;chr3:141747441..141747452,-!p4@TFDP2!0.92!10.50!TFDP2;;chr3:168865250..168865272,-!p5@MECOM!0.92!7.28!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.28!HOXA11;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.11!TAL1;;chr1:221052776..221052799,+!p1@HLX!0.90!12.87!HLX;;chr19:13213555..13213568,-!p5@LYL1!0.90!6.94!LYL1;;chr7:50344251..50344288,+!p3@IKZF1!0.90!6.94!IKZF1;;chr5:321810..321877,+!p1@AHRR!0.89!22.69!AHRR;;chr2:16081912..16081931,+!p2@MYCN!0.89!6.77!MYCN;;chr7:149470641..149470694,-!p1@ZNF467!0.88!30.98!ZNF467;;chr19:20011744..20011770,+!p1@ZNF93!0.87!26.07!ZNF93;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.55!BRCA1;;chr2:214014959..214015006,-!p4@IKZF2!0.87!6.43!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.26!GFI1;;chr13:41593425..41593480,-!p1@ELF1!0.85!41.31!ELF1;;chr12:54694653..54694672,-!p2@NFE2!0.84!5.93!NFE2;;chr1:25291620..25291635,-!p4@RUNX3!0.84!5.93!RUNX3;;chr12:11802600..11802685,+!p1@ETV6!0.83!94.63!ETV6;;chr17:46622205..46622218,-!p3@HOXB2!0.83!6.77!HOXB2;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.76!IKZF1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.82!12.87!SOHLH2;;chr1:23857698..23857733,-!p1@E2F2!0.81!10.33!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.81!9.31!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.81!5.42!SPI1;;chr17:46675420..46675465,-!p3@HOXB6!0.80!6.26!HOXB6;;chr6:144385698..144385742,-!p2@PLAGL1!0.79!6.43!PLAGL1;;chr1:221052994..221053008,+!p6@HLX!0.79!6.26!HLX;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.41!TONSL;;chr14:89628064..89628109,-!p4@FOXN3!0.78!11.00!FOXN3;;chr3:71355163..71355209,-!p5@FOXP1!0.78!7.28!FOXP1;;chr4:57522166..57522260,-!p2@HOPX!0.78!5.93!HOPX;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.08!DNMT3A;;chr21:34442439..34442455,+!p1@OLIG1!0.78!5.08!OLIG1;;chr18:22932004..22932021,-!p2@ZNF521!0.78!5.08!ZNF521;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.91!OTX1;;chr13:100634004..100634025,+!p2@ZIC2!0.77!4.91!ZIC2;;chr8:116681409..116681431,-!p2@TRPS1!0.76!13.88!TRPS1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.78!ZNF43;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.57!HOXA7;;chr22:21771656..21771662,+!p1@HIC2!0.75!4.57!HIC2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.38!STAT5A;;chr14:74226961..74227020,-!p1@C14orf43!0.73!32.00!C14orf43;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.50!HOXB2;;chr21:40177845..40177863,+!p1@ETS2!0.72!286.95!ETS2;;chrX:70503529..70503549,+!p2@NONO!0.72!25.56!NONO;;chr15:66994523..66994541,+!p5@SMAD6!0.72!4.23!SMAD6;;chr11:47399920..47399931,-!p7@SPI1!0.72!4.23!SPI1;;chr2:60780753..60780800,-!p1@BCL11A!0.70!22.35!BCL11A;;chr19:12163769..12163798,-!p1@ZNF878!0.70!5.42!ZNF878;;chr2:100759010..100759035,-!p1@AFF3!0.70!4.06!AFF3;;chr6:21593973..21593988,+!p1@SOX4!0.69!160.32!SOX4;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.48!MAZ;;chr6:20402102..20402152,+!p1@E2F3!0.69!18.11!E2F3;;chr5:88179195..88179224,-!p3@MEF2C!0.69!6.60!MEF2C;;chr2:60778035..60778060,-!p4@BCL11A!0.69!4.74!BCL11A;;chr17:46655672..46655697,-!p3@HOXB4!0.69!3.89!HOXB4;;chr11:32457075..32457095,-!p1@WT1!0.69!3.89!WT1;;chr16:68119324..68119364,+!p1@NFATC3!0.68!18.96!NFATC3;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.09!HOXB2;;chr8:116680833..116680881,-!p7@TRPS1!0.68!6.09!TRPS1;;chr16:88752889..88752921,-!p1@SNAI3!0.68!4.57!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.57!HOXB2;;chr6:21597765..21597779,+!p2@SOX4!0.67!33.86!SOX4;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.00!WDHD1;;chr2:66662249..66662267,+!p2@MEIS1!0.67!15.91!MEIS1;;chr19:20011775..20011800,+!p2@ZNF93!0.67!7.11!ZNF93;;chr7:128577972..128578047,+!p1@IRF5!0.67!6.26!IRF5;;chr17:46667594..46667619,-!p1@HOXB3!0.67!3.72!HOXB3;;chr11:32457103..32457123,-!p3@WT1!0.67!3.72!WT1;;chr14:65568389..65568408,-!p4@MAX!0.67!3.72!MAX;;chr15:66994561..66994597,+!p2@SMAD6!0.66!9.48!SMAD6;;chr8:116680215..116680245,-!p6@TRPS1!0.66!5.93!TRPS1;;chr19:20011731..20011743,+!p3@ZNF93!0.66!4.91!ZNF93;;chr2:16080635..16080650,+!p4@MYCN!0.66!3.56!MYCN;;chr19:45579725..45579743,-!p1@ZNF296!0.65!17.78!ZNF296;;chr19:19976683..19976709,+!p1@ZNF253!0.65!17.61!ZNF253;;chr19:20959098..20959117,+!p1@ZNF66P!0.65!16.25!ZNF66P;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.22!RUNX1;;chr7:149470540..149470596,-!p2@ZNF467!0.65!4.74!ZNF467;;chr7:64363638..64363667,+!p1@ZNF273!0.64!19.64!ZNF273;;chr5:124084493..124084524,-!p2@ZNF608!0.64!8.30!ZNF608;;chr2:100759037..100759058,-!p2@AFF3!0.64!3.39!AFF3;;chr15:57210961..57211012,+!p3@TCF12!0.63!12.02!TCF12;;chr17:42295777..42295816,-!p7@UBTF!0.63!4.06!UBTF;;chr11:128563948..128564003,+!p1@FLI1!0.62!45.71!FLI1;;chr16:88752836..88752852,-!p3@SNAI3!0.62!3.22!SNAI3;;chr19:13213465..13213478,-!p7@LYL1!0.62!3.22!LYL1;;chr19:13213634..13213645,-!p8@LYL1!0.62!3.22!LYL1;;chr2:66662396..66662407,+!p4@MEIS1!0.62!3.22!MEIS1;;chr6:135513595..135513617,+!p4@MYB!0.62!3.22!MYB;;chr20:35201993..35202050,+!p1@TGIF2!0.61!41.31!TGIF2;;chr14:65569101..65569119,-!p3@MAX!0.61!11.17!MAX;;chr1:247171316..247171336,-!p3@ZNF695!0.61!4.91!ZNF695;;chr1:92950138..92950159,-!p4@GFI1!0.61!3.05!GFI1;;chr11:128562372..128562397,+!p4@FLI1!0.61!3.05!FLI1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.05!NFE2;;chr17:40440446..40440464,+!p5@STAT5A!0.61!3.05!STAT5A;;chr19:23433144..23433204,-!p1@ZNF724P!0.60!15.91!ZNF724P;;chr8:72756063..72756125,-!p1@MSC!0.60!6.77!MSC;;chr18:47814010..47814021,-!p3@CXXC1!0.60!5.42!CXXC1;;chr11:47236584..47236679,+!p1@DDB2!0.59!38.77!DDB2;;chr16:67063211..67063240,+!p2@CBFB!0.59!16.42!CBFB;;chr7:64126535..64126559,+!p2@ZNF107!0.59!6.94!ZNF107;;chr19:12203069..12203094,+!p2@ZNF788!0.59!4.57!ZNF788;;chr17:40441330..40441344,+!p9@STAT5A!0.59!2.88!STAT5A;;chr12:56415246..56415286,+!p2@IKZF4!0.59!2.88!IKZF4;;chr3:18487057..18487105,-!p4@SATB1!0.59!2.88!SATB1;;chr2:8822176..8822196,+!p1@ID2!0.58!487.05!ID2;;chr19:56988677..56988729,-!p1@ZNF667!0.58!5.59!ZNF667;;chr1:221052733..221052749,+!p2@HLX!0.58!3.89!HLX;;chr1:158979686..158979745,+!p1@IFI16!0.57!112.24!IFI16;;chr19:21264991..21265026,+!p1@ZNF714!0.57!21.67!ZNF714;;chr17:41322281..41322328,-!p2@BRCA1!0.57!9.14!BRCA1;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.42!IKZF2;;chr1:158985493..158985535,+!p4@IFI16!0.57!4.57!IFI16;;chr1:3569101..3569115,+!p2@T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BOX1!0.30!4.91!HMBOX1;;chr19:37958318..37958365,-!p2@ZNF569!0.30!4.06!ZNF569;;chr7:129251614..129251630,+!p2@NRF1!0.30!3.56!NRF1;;chr8:146228226..146228264,-!p2@ZNF252!0.30!3.56!ZNF252P;;chr7:21467642..21467671,+!p2@SP4!0.30!3.39!SP4;;chr17:61920116..61920131,-!p5@SMARCD2!0.30!2.71!SMARCD2;;chr1:247171347..247171366,-!p2@ZNF695!0.30!2.54!ZNF695;;chr1:156470494..156470505,-!p3@MEF2D!0.30!1.86!MEF2D;;chr17:79881332..79881348,-!p3@MAFG!0.30!1.86!MAFG;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.30!1.35!ZNF551;;chr3:75834722..75834733,-!p2@ZNF717!0.30!1.35!ZNF717;;chr2:16080823..16080836,+!p5@MYCN!0.30!1.02!MYCN;;chr2:60780485..60780498,-!p12@BCL11A!0.30!1.02!BCL11A;;chr2:60780516..60780526,-!p11@BCL11A!0.30!1.02!BCL11A;;chr2:63277927..63277938,+!p3@OTX1!0.30!1.02!OTX1;;chr2:74730087..74730102,-!p4@LBX2!0.30!1.02!LBX2;;chr2:97203110..97203159,+!p4@ARID5A!0.30!1.02!ARID5A;;chr3:128207349..128207386,-!p3@GATA2!0.30!1.02!GATA2;;chr3:168865364..168865376,-!p11@MECOM!0.30!1.02!MECOM;;chr3:168865497..168865516,-!p16@MECOM!0.30!1.02!MECOM;;chr4:87927888..87927912,+!p18@AFF1!0.30!1.02!AFF1;;chr17:41622731..41622764,-!p5@ETV4!0.30!1.02!ETV4;;chr17:46675608..46675618,-!p10@HOXB6!0.30!1.02!HOXB6;;chr18:77155942..77155951,+!p3@NFATC1!0.30!1.02!NFATC1;;chr19:13213399..13213414,-!p6@LYL1!0.30!1.02!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.30!1.02!LYL1;;chr6:15401075..15401095,+!p11@JARID2!0.30!1.02!JARID2;;chr7:128578070..128578077,+!p3@IRF5!0.30!1.02!IRF5;;chr7:27239703..27239715,-!p1@HOXA13!0.30!1.02!HOXA13;;chr7:64363682..64363692,+!p4@ZNF273!0.30!1.02!ZNF273;;chr8:86089498..86089519,+!p6@E2F5!0.30!1.02!E2F5;;chr12:54694686..54694697,-!p8@NFE2!0.30!1.02!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.30!1.02!ZIC5;;chr13:100634111..100634118,+!p8@ZIC2!0.30!1.02!ZIC2;;chr1:158978768..158978800,+!p8@IFI16!0.30!1.02!IFI16;;chr1:158985457..158985468,+!p12@IFI16!0.30!1.02!IFI16;;chr1:200011711..200011752,+!p3@NR5A2!0.30!1.02!NR5A2;;chr1:25256175..25256228,-!p5@RUNX3!0.30!1.02!RUNX3;;chr1:3568911..3568925,+!p9@TP73!0.30!1.02!TP73;;chr1:47697881..47697910,-!p4@TAL1!0.30!1.02!TAL1;;chr16:67596417..67596497,+!p1@CTCF!0.29!60.78!CTCF;;chr7:74072021..74072119,+!p1@GTF2I!0.29!44.86!GTF2I;;chr4:57774042..57774114,+!p1@REST!0.29!43.17!REST;;chr6:15246261..15246312,+!p1@JARID2!0.29!42.83!JARID2;;chr2:113012592..113012671,-!p1@ZC3H8!0.29!29.29!ZC3H8;;chr19:52772832..52772861,+!p1@ZNF766!0.29!17.27!ZNF766;;chr4:140005443..140005527,-!p2@ELF2!0.29!9.82!ELF2;;chr13:41635512..41635539,-!p2@ELF1!0.29!9.14!ELF1;;chr6:7107999..7108031,+!p2@RREB1!0.29!8.80!RREB1;;chr19:36870087..36870110,-!p1@ZFP14!0.29!5.93!ZFP14;;chr19:52074502..52074587,+!p1@ZNF175!0.29!5.76!ZNF175;;chr21:27107465..27107557,+!p3@GABPA!0.29!5.76!GABPA;;chr10:43133950..43133994,-!p2@ZNF33B!0.29!5.59!ZNF33B;;chr19:44598534..44598559,+!p2@ZNF224!0.29!4.74!ZNF224;;chr13:45011349..45011391,-!p4@TSC22D1!0.29!3.56!TSC22D1;;chr1:35656397..35656455,-!p3@SFPQ!0.29!3.39!SFPQ;;chr19:36391434..36391450,-!p1@NFKBID!0.29!2.71!NFKBID;;chr19:36909484..36909525,-!p2@ZFP82!0.29!2.71!ZFP82;;chr19:19976714..19976729,+!p3@ZNF253!0.29!2.54!ZNF253;;chr6:15246217..15246228,+!p3@JARID2!0.29!2.37!JARID2;;chr17:7388010..7388017,-!p5@ZBTB4!0.29!2.20!ZBTB4;;chr17:42297000..42297022,-!p15@UBTF!0.29!1.69!UBTF;;chr1:41157671..41157695,+!p6@NFYC!0.29!1.69!NFYC;;chr19:52531585..52531596,-!p2@ZNF614!0.29!1.52!ZNF614;;chr20:44600785..44600794,-!p7@ZNF335!0.29!1.19!ZNF335;;chr2:43453734..43453751,-!p1@ZFP36L2!0.28!184.53!ZFP36L2;;chr13:20357063..20357105,-!p1@PSPC1!0.28!56.04!PSPC1;;chr21:36260980..36261011,-!p1@RUNX1!0.28!49.94!RUNX1;;chr19:47615498..47615522,-!p1@ZC3H4!0.28!40.29!ZC3H4;;chr4:4291861..4291913,-!p1@LYAR!0.28!39.11!LYAR;;chr19:21324829..21324855,+!p1@ZNF431!0.28!27.09!ZNF431;;chr16:3333443..3333545,+!p1@ZNF263!0.28!19.98!ZNF263;;chr7:64254793..64254813,+!p1@ZNF138!0.28!19.47!ZNF138;;chr19:52531600..52531685,-!p1@ZNF614!0.28!15.24!ZNF614;;chr7:148892629..148892651,+!p2@ZNF282!0.28!9.82!ZNF282;;chr4:140005341..140005411,-!p3@ELF2!0.28!8.46!ELF2;;chrX:47863348..47863412,-!p1@ZNF182!0.28!6.26!ZNF182;;chr1:117602932..117602973,+!p1@TTF2!0.28!5.76!TTF2;;chr19:58071201..58071238,-!p1@ZNF550!0.28!5.42!ZNF550;;chr19:58111241..58111292,+!p1@ZNF530!0.28!5.25!ZNF530;;chr19:37709076..37709154,+!p1@ZNF383!0.28!5.08!ZNF383;;chr4:4291837..4291859,-!p2@LYAR!0.28!4.91!LYAR;;chr21:34144115..34144138,-!p2@GCFC1!0.28!4.23!GCFC1;;chr9:137217986..137218049,+!p3@RXRA!0.28!4.23!RXRA;;chr8:86089369..86089408,+!p1@E2F5!0.28!3.89!E2F5;;chr18:47808120..47808171,-!p2@MBD1!0.28!3.56!MBD1;;chr4:26322267..26322334,+!p3@RBPJ!0.28!3.39!RBPJ;;chr16:29818132..29818144,+!p12@MAZ!0.28!2.71!MAZ;;chrX:77041657..77041668,-!p2@ATRX!0.28!2.71!ATRX;;chr5:76383070..76383117,-!p3@ZBED3!0.28!2.71!ZBED3;;chr16:89787973..89788001,+!p3@ZNF276!0.28!2.54!ZNF276;;chr12:53574338..53574358,+!p2@ZNF740!0.28!2.54!ZNF740;;chr1:235383681..235383700,-!p2@ARID4B!0.28!2.20!ARID4B;;chr19:44331461..44331482,+!p3@ZNF283!0.28!2.03!ZNF283;;chr10:21823381..2182339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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10831-111D3
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
 |library_id=CNhs13504
+|library_id_phase_based=2:CNhs13504
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10831
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10831
 |name=acute myeloid leukemia (FAB M4) cell line:HNT-34
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13504,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10831-111D3;search_select_hide=table117:FF:10831-111D3
 }}

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FF:10831-111D3: Difference between revisions

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Latest revision as of 15:08, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0