Personal tools

FF:11220-116B5: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
← Older edit
No edit summary
No edit summary
 
(6 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005631
|DRA_sample_Accession=CAGE@SAMD00005631
|accession_numbers=CAGE;DRX008447;DRR009319;DRZ000744;DRZ002129
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005631
|accession_numbers=CAGE;DRX008447;DRR009319;DRZ000744;DRZ002129;DRZ012094;DRZ013479
|accession_numbers_RNASeq=sRNA-Seq;DRX037004;DRR041370;DRZ007012
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002419,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0002365,UBERON:0007771,UBERON:0002530,UBERON:0003297,UBERON:0001821,UBERON:0010317,UBERON:0003487,UBERON:0001820,UBERON:0002330,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002419,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0002365,UBERON:0007771,UBERON:0002530,UBERON:0003297,UBERON:0001821,UBERON:0010317,UBERON:0003487,UBERON:0001820,UBERON:0002330,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000150,CL:0000362,CL:0000154,CL:0002159,CL:0000255,CL:0002077,CL:0000317,CL:0000622,CL:1000448,CL:0002308,CL:0002140
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000076,CL:0000150,CL:0000362,CL:0000154,CL:0002159,CL:0000255,CL:0002077,CL:0000317,CL:0000622,CL:1000448,CL:0002308,CL:0002140
Line 42: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Sebocyte%252c%2520donor1.CNhs10847.11220-116B5.hg38.nobarcode.ctss.bed.gz
|id=FF:11220-116B5
|id=FF:11220-116B5
|is_a=EFO:0002091;;FF:0000160
|is_a=EFO:0002091;;FF:0000160
Line 47: Line 54:
|library_id=CNhs10847
|library_id=CNhs10847
|library_id_phase_based=2:CNhs10847
|library_id_phase_based=2:CNhs10847
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11220
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTAGAG.11220
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11220
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTAGAG.11220
|name=Sebocyte, donor1
|name=Sebocyte, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.275168710182474,-0.282403560576942,0,0,0,0,0,0,0,0,0.197077988480498,0,0.518127133982576,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.219489484482706,0,0,0,0.332141639627736,0,0,0,0,0.0743239731274145,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.169200839341702,0,0,0,0,0,0,-0.00358475715384188,0,0,0,0.130026225094989,0.0478661642954192,0,0,0,0,-0.0980353512377064,-0.039938206560646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00216540031778779,0,0,0,-0.164360914024306,-0.285924111742804,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.275168710182474,-0.282403560576942,0,0,0,0,0,0,0,0,0.197077988480498,0,0.518127133982576,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.219489484482706,0,0,0,0.332141639627736,0,0,0,0,0.0743239731274145,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.169200839341702,0,0,0,0,0,0,-0.00358475715384188,0,0,0,0.130026225094989,0.0478661642954192,0,0,0,0,-0.0980353512377064,-0.039938206560646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00216540031778779,0,0,0,-0.164360914024306,-0.285924111742804,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.187836326568028,0,-0.0390710168984162,0.188626497104265,0,0,0.0891374821121313,0,0,0,0,0,0,0,0,0,0.79953028429781,0,0.281729088038422,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.00818724133564155,-0.0683442610773682,0,0,0,0,-0.0056308552802074,0,-0.120879483793741,-0.0827201683234173,-0.00391003846572435,0.400273586894904,-0.0100554766969977,0,0,0,0.353193228053697,0.134157317116615,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.0370437224588865,0.388188115802637,0,-0.165398901273391,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0.197077988480498,0,0.295815061711755,0,0,-0.373286155956567,0.211044665648974,0,0.228341049862703,0,-0.302389727009913,-0.173351626666852,0.336947432910337,0.130026225094989,-0.147401849371139,0.00709626893065021,0,0.0240778446062837,-0.0385405167516896,0.0980861232382255,-0.00358475715384188,0.0934034775834465,0.364922333201567,-0.280803513418726,0,0,0,-0.0644522888217618,0,0,-0.490114714476774,0.121200867777773,0.175164111460494,0.172545899298798,0.016080908447144,-0.198166037775282,-0.0395325284566706,0.0606906810859811,0,-0.162508757912412,0,0,0,-0.0743845512774014,-0.137982384895243,-0.283684533550943,0,0.163952260401098,-0.0683442610773682,0,0.118290142597938,-0.035968306075838,0,0,0.555841020637334,0,0,0.157025621505516,0,0,0.050931217975094,-0.539492143030166,-0.0357775730750473,0,0.126575046163821,-0.019374810913246,0.026678780753453,0,0.21054503335298,0.289005304396198,0.0340674872664441,-0.0955558161157384,0,0.174634206989979,0.167666492210727,0.0186277439636933,0.0957323285908384,-0.0584468268118252,-0.082542211563652,-0.00768915333465814,0.161011284520532,-0.0412077524279043,0,0.10895115600521,0.0796135638843293,-0.0933729372160328,-0.244482929767932,0,0.00784375287838551,0,-0.222794075704337,0,-0.176797801227467,0,-0.0156377695080303,0.160257746942427,-0.439289374580686,-0.0407928239193807,0,0.111565182003485,1.56287119490903,0.00504197519737715,0.104650270236683,-0.0164716176863073,0.197077988480498,-0.150367083334639,-0.500617978032085,-0.045579608050721,-0.138989456679195,0,0.192823194618596,0,0,-0.026651617802543,-0.235476037764389,0,0.188947740886221,-0.412124925732899,-0.169200839341702,0.0811069150455635,0,0,0.251441967185756,0,0,0.321722087432345,0.236320019912771,-0.422705335478136,0.57550462177795,0.0966573438675665,0.422080365365413,0,0,-0.177527765965176,0,-0.203289051925551,0,0,-0.0838104767849553,0.0804498754903648,0,0,0,-0.195265690557764,0,0,0,0,0,0,0,-1.13453003597266,0.0801818716371442,0,0.284089002986189,0,0.197077988480498,0,0,0,0.271114594416423,0,0,0.9828516886379,0,0.0740605728040773,0.166070819813868,0,0,0,-0.215723402553475,-0.203236562094724,0,0.0652152819828658,0,0.098538994240249,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.139505371716286,0,0,0,-0.27695440160179,0,0,0,0,-0.176863309492955,0,0,0,0,0.150286861519373,0.115496108933656,0,-0.0539456053912366,0.502638382957528,0.880439948467555,0,0.332141639627736,-0.261347131789888,0,0,-0.517817187650672,0,0.197077988480498,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.00494774051791347,-0.0922240566585104,0.0262233203542177,0,0,0,0,0,0,-0.0241060230789031,0.0207383625162685,0,0,0,0,0,0,0,0,-0.274347951182745,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0737589024450498,-0.275168710182474,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260185063146192,0,0.147807685880682,-0.0104117709809823,0,0,-0.0665575328191735,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.00650618443972255,0,0,0,0,0,0,-0.0289132736654215,0.391586709671853,-0.0682767624553459,0,0,0,0.0441534217577937,0,0,0.00226927756934048,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.197077988480498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.219489484482706,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0.332141639627736,0.148647946254829,0,0,0,0,0,0,0,0,1.43800749321017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166070819813868,-0.171525664451572,-0.285924111742804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16123279153565,0,0,0,0,0,0,0,0,0,0,0.518127133982576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0325364848558146,0,0,0,0,0,0,0,0,0.197077988480498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00433080063557559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00883440552736115,0,0,0,0,0,0,0,0.0743819914834966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098538994240249,0,0.197077988480498,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166070819813868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.109753964515882,0,0,-0.0422874684771159,0,-0.166722002508876,0.210200401642599,0,0,0,0,0,0.0483488084730219,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.0709531495740764,-0.397074688522015,0,0,-0.349623590858238,0,-0.0306427945693274,-0.0477396614475454,0,0,-0.174992895090299,-0.457410410152232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.0723976471140716,0,-0.181758265869926,0,0,0.0810906284367423,0,0,0,-0.0959594073735869
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.187836326568028,0,-0.0390710168984162,0.188626497104265,0,0,0.0891374821121313,0,0,0,0,0,0,0,0,0,0.79953028429781,0,0.281729088038422,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.00818724133564155,-0.0683442610773682,0,0,0,0,-0.0056308552802074,0,-0.120879483793741,-0.0827201683234173,-0.00391003846572435,0.400273586894904,-0.0100554766969977,0,0,0,0.353193228053697,0.134157317116615,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.0370437224588865,0.388188115802637,0,-0.165398901273391,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0.197077988480498,0,0.295815061711755,0,0,-0.373286155956567,0.211044665648974,0,0.228341049862703,0,-0.302389727009913,-0.173351626666852,0.336947432910337,0.130026225094989,-0.147401849371139,0.00709626893065021,0,0.0240778446062837,-0.0385405167516896,0.0980861232382255,-0.00358475715384188,0.0934034775834465,0.364922333201567,-0.280803513418726,0,0,0,-0.0644522888217618,0,0,-0.490114714476774,0.121200867777773,0.175164111460494,0.172545899298798,0.016080908447144,-0.198166037775282,-0.0395325284566706,0.0606906810859811,0,-0.162508757912412,0,0,0,-0.0743845512774014,-0.137982384895243,-0.283684533550943,0,0.163952260401098,-0.0683442610773682,0,0.118290142597938,-0.035968306075838,0,0,0.555841020637334,0,0,0.157025621505516,0,0,0.050931217975094,-0.539492143030166,-0.0357775730750473,0,0.126575046163821,-0.019374810913246,0.026678780753453,0,0.21054503335298,0.289005304396198,0.0340674872664441,-0.0955558161157384,0,0.174634206989979,0.167666492210727,0.0186277439636933,0.0957323285908384,-0.0584468268118252,-0.082542211563652,-0.00768915333465814,0.161011284520532,-0.0412077524279043,0,0.10895115600521,0.0796135638843293,-0.0933729372160328,-0.244482929767932,0,0.00784375287838551,0,-0.222794075704337,0,-0.176797801227467,0,-0.0156377695080303,0.160257746942427,-0.439289374580686,-0.0407928239193807,0,0.111565182003485,1.56287119490903,0.00504197519737715,0.104650270236683,-0.0164716176863073,0.197077988480498,-0.150367083334639,-0.500617978032085,-0.045579608050721,-0.138989456679195,0,0.192823194618596,0,0,-0.026651617802543,-0.235476037764389,0,0.188947740886221,-0.412124925732899,-0.169200839341702,0.0811069150455635,0,0,0.251441967185756,0,0,0.321722087432345,0.236320019912771,-0.422705335478136,0.57550462177795,0.0966573438675665,0.422080365365413,0,0,-0.177527765965176,0,-0.203289051925551,0,0,-0.0838104767849553,0.0804498754903648,0,0,0,-0.195265690557764,0,0,0,0,0,0,0,-1.13453003597266,0.0801818716371442,0,0.284089002986189,0,0.197077988480498,0,0,0,0.271114594416423,0,0,0.9828516886379,0,0.0740605728040773,0.166070819813868,0,0,0,-0.215723402553475,-0.203236562094724,0,0.0652152819828658,0,0.098538994240249,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.139505371716286,0,0,0,-0.27695440160179,0,0,0,0,-0.176863309492955,0,0,0,0,0.150286861519373,0.115496108933656,0,-0.0539456053912366,0.502638382957528,0.880439948467555,0,0.332141639627736,-0.261347131789888,0,0,-0.517817187650672,0,0.197077988480498,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.00494774051791347,-0.0922240566585104,0.0262233203542177,0,0,0,0,0,0,-0.0241060230789031,0.0207383625162685,0,0,0,0,0,0,0,0,-0.274347951182745,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0737589024450498,-0.275168710182474,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260185063146192,0,0.147807685880682,-0.0104117709809823,0,0,-0.0665575328191735,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.00650618443972255,0,0,0,0,0,0,-0.0289132736654215,0.391586709671853,-0.0682767624553459,0,0,0,0.0441534217577937,0,0,0.00226927756934048,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.197077988480498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.219489484482706,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0.332141639627736,0.148647946254829,0,0,0,0,0,0,0,0,1.43800749321017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166070819813868,-0.171525664451572,-0.285924111742804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16123279153565,0,0,0,0,0,0,0,0,0,0,0.518127133982576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0325364848558146,0,0,0,0,0,0,0,0,0.197077988480498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00433080063557559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00883440552736115,0,0,0,0,0,0,0,0.0743819914834966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098538994240249,0,0.197077988480498,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166070819813868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.109753964515882,0,0,-0.0422874684771159,0,-0.166722002508876,0.210200401642599,0,0,0,0,0,0.0483488084730219,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,-0.0709531495740764,-0.397074688522015,0,0,-0.349623590858238,0,-0.0306427945693274,-0.0477396614475454,0,0,-0.174992895090299,-0.457410410152232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,-0.0723976471140716,0,-0.181758265869926,0,0,0.0810906284367423,0,0,0,-0.0959594073735869
Line 69: Line 82:
|rna_tube_id=116B5
|rna_tube_id=116B5
|rna_weight_ug=23.463
|rna_weight_ug=23.463
|rnaseq_library_id=SRhi10002.GTAGAG
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_category=primary cells
Line 92: Line 106:
|top_motifs=TP53:2.70908833073;TBX4,5:2.57979775095;ADNP_IRX_SIX_ZHX:1.58297672046;ZNF238:1.5743557489;SPZ1:1.53453079806;ZEB1:1.47711336553;TFCP2:1.43368013215;TFAP2{A,C}:1.43091245991;ZNF148:1.41121360942;EBF1:1.31803861489;PDX1:1.23575053673;IKZF1:1.23009877401;SNAI1..3:1.20948787833;TBP:1.16950513789;GLI1..3:1.15848203406;NANOG:1.10206263308;VSX1,2:1.04329563372;NFIX:0.990669446657;TEAD1:0.978573618045;HAND1,2:0.921838098601;XCPE1{core}:0.883287244971;bHLH_family:0.857595429978;PAX4:0.817682991912;ZNF423:0.808586554266;GTF2A1,2:0.788847242813;NKX2-3_NKX2-5:0.783868508976;ONECUT1,2:0.777648960299;SOX17:0.771761809562;FOS_FOS{B,L1}_JUN{B,D}:0.764212348383;SP1:0.75432771674;EN1,2:0.752243815626;HLF:0.742566045211;MTF1:0.71259203403;MYOD1:0.686213804163;NKX2-1,4:0.676516122636;CEBPA,B_DDIT3:0.668815982407;PAX1,9:0.611802774811;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.587401725675;NKX3-2:0.560581666641;HES1:0.550551807216;BACH2:0.548123643582;HSF1,2:0.545645945096;PAX8:0.532691909415;SMAD1..7,9:0.526253590824;TLX1..3_NFIC{dimer}:0.523012695068;HOX{A5,B5}:0.518871317522;FOSL2:0.515926607309;GFI1B:0.510274387639;HOX{A6,A7,B6,B7}:0.502643197823;EP300:0.487413349984;FOXM1:0.438877390666;TFDP1:0.429864610486;MAZ:0.42359393644;CRX:0.40839309673;JUN:0.380479835214;GZF1:0.367828728838;POU1F1:0.36647300986;HOX{A4,D4}:0.364773981195;TEF:0.334050766364;STAT5{A,B}:0.326887389869;IRF7:0.29617100903;ARID5B:0.285985664778;KLF4:0.276477060254;T:0.244792026085;ZIC1..3:0.235158198096;POU6F1:0.221056131954;NFIL3:0.22067232212;HNF1A:0.205605037585;ELK1,4_GABP{A,B1}:0.185570554695;NR5A1,2:0.171813959002;FOXA2:0.16979780689;GTF2I:0.168381280553;AR:0.16628699979;POU2F1..3:0.148197069894;NFKB1_REL_RELA:0.13775411955;SRF:0.125350006256;RREB1:0.113788662892;LMO2:0.10590443694;ZBTB6:0.102705375868;GCM1,2:0.0933945108693;TFAP2B:0.0891639432199;MED-1{core}:0.0729964333029;NFE2:0.0546242880312;TFAP4:0.0539785708051;MTE{core}:0.048436823968;TOPORS:0.0461373285495;PAX2:0.0437752197465;NR1H4:0.0427252656593;PBX1:0.0398144568571;HIF1A:0.0365108745895;REST:0.0318126041327;LHX3,4:0.00238566519131;LEF1_TCF7_TCF7L1,2:-0.00829032561603;ZNF143:-0.00972024309538;POU3F1..4:-0.0323337869666;GATA6:-0.0493538078806;ETS1,2:-0.0541088783456;RXR{A,B,G}:-0.0914675350563;PAX5:-0.0927198903527;NR6A1:-0.100954735106;YY1:-0.101370605175;ESRRA:-0.114436039112;NKX2-2,8:-0.117220699402;OCT4_SOX2{dimer}:-0.117411840423;NR3C1:-0.12560309694;ALX4:-0.135825956505;ATF2:-0.14169161609;NFATC1..3:-0.146725566826;SOX2:-0.15186982131;HIC1:-0.16138979614;NFE2L2:-0.171396275976;RXRA_VDR{dimer}:-0.1763198182;MYBL2:-0.20212312506;FOXL1:-0.20609115246;CDC5L:-0.213695715632;MAFB:-0.220811036201;NHLH1,2:-0.258368003789;HMX1:-0.261978836029;GFI1:-0.264036985405;ATF5_CREB3:-0.268937002033;MEF2{A,B,C,D}:-0.27919285676;PATZ1:-0.280428997678;STAT2,4,6:-0.281843787341;NFY{A,B,C}:-0.288462604315;ESR1:-0.291445170668;HMGA1,2:-0.295966580279;ELF1,2,4:-0.319443575595;ZFP161:-0.346655675062;PRDM1:-0.361554363944;RBPJ:-0.361986567268;FOXN1:-0.373383607301;RUNX1..3:-0.374454497518;PRRX1,2:-0.388633339715;SPIB:-0.393728104669;NKX3-1:-0.398609683136;MZF1:-0.401927249166;SOX{8,9,10}:-0.40295745544;SPI1:-0.414079965691;E2F1..5:-0.426283277146;HNF4A_NR2F1,2:-0.427423923148;MYB:-0.433515995869;TLX2:-0.448008702675;NANOG{mouse}:-0.450999688776;ATF4:-0.470583026278;NRF1:-0.484960330319;POU5F1:-0.489381356138;UFEwm:-0.52125416359;ZNF384:-0.553077175883;FOXP3:-0.568438360117;RFX1:-0.573828532213;FOX{F1,F2,J1}:-0.581645582956;PITX1..3:-0.583580304942;HBP1_HMGB_SSRP1_UBTF:-0.594091229838;SREBF1,2:-0.594441710641;RFX2..5_RFXANK_RFXAP:-0.595855214796;IRF1,2:-0.612543113481;MYFfamily:-0.626228920747;SOX5:-0.637162039028;CUX2:-0.637783574178;TGIF1:-0.63926667491;CREB1:-0.671508469282;AHR_ARNT_ARNT2:-0.680020582417;FOXO1,3,4:-0.68404369631;PAX3,7:-0.692431254275;NFE2L1:-0.721536801751;FOX{D1,D2}:-0.776275307731;ATF6:-0.778507754891;EVI1:-0.78094230892;FOXQ1:-0.800404888607;EGR1..3:-0.809916655093;AIRE:-0.833456958244;BPTF:-0.83718936786;TAL1_TCF{3,4,12}:-0.842872502498;RORA:-0.860054711246;STAT1,3:-0.861259173423;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.878200012898;PPARG:-0.906444639939;PAX6:-0.969712286386;XBP1:-0.985231181586;BREu{core}:-1.0198182245;DMAP1_NCOR{1,2}_SMARC:-1.04284247622;CDX1,2,4:-1.07410313318;FOXP1:-1.08555199129;ZBTB16:-1.10323145608;DBP:-1.11053412174;FOX{I1,J2}:-1.15562254408;NKX6-1,2:-1.20331955261;HOXA9_MEIS1:-1.21134506856;GATA4:-1.26841043833;FOXD3:-1.39852886429;ALX1:-1.62922703851;IKZF2:-1.78398467998
|top_motifs=TP53:2.70908833073;TBX4,5:2.57979775095;ADNP_IRX_SIX_ZHX:1.58297672046;ZNF238:1.5743557489;SPZ1:1.53453079806;ZEB1:1.47711336553;TFCP2:1.43368013215;TFAP2{A,C}:1.43091245991;ZNF148:1.41121360942;EBF1:1.31803861489;PDX1:1.23575053673;IKZF1:1.23009877401;SNAI1..3:1.20948787833;TBP:1.16950513789;GLI1..3:1.15848203406;NANOG:1.10206263308;VSX1,2:1.04329563372;NFIX:0.990669446657;TEAD1:0.978573618045;HAND1,2:0.921838098601;XCPE1{core}:0.883287244971;bHLH_family:0.857595429978;PAX4:0.817682991912;ZNF423:0.808586554266;GTF2A1,2:0.788847242813;NKX2-3_NKX2-5:0.783868508976;ONECUT1,2:0.777648960299;SOX17:0.771761809562;FOS_FOS{B,L1}_JUN{B,D}:0.764212348383;SP1:0.75432771674;EN1,2:0.752243815626;HLF:0.742566045211;MTF1:0.71259203403;MYOD1:0.686213804163;NKX2-1,4:0.676516122636;CEBPA,B_DDIT3:0.668815982407;PAX1,9:0.611802774811;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.587401725675;NKX3-2:0.560581666641;HES1:0.550551807216;BACH2:0.548123643582;HSF1,2:0.545645945096;PAX8:0.532691909415;SMAD1..7,9:0.526253590824;TLX1..3_NFIC{dimer}:0.523012695068;HOX{A5,B5}:0.518871317522;FOSL2:0.515926607309;GFI1B:0.510274387639;HOX{A6,A7,B6,B7}:0.502643197823;EP300:0.487413349984;FOXM1:0.438877390666;TFDP1:0.429864610486;MAZ:0.42359393644;CRX:0.40839309673;JUN:0.380479835214;GZF1:0.367828728838;POU1F1:0.36647300986;HOX{A4,D4}:0.364773981195;TEF:0.334050766364;STAT5{A,B}:0.326887389869;IRF7:0.29617100903;ARID5B:0.285985664778;KLF4:0.276477060254;T:0.244792026085;ZIC1..3:0.235158198096;POU6F1:0.221056131954;NFIL3:0.22067232212;HNF1A:0.205605037585;ELK1,4_GABP{A,B1}:0.185570554695;NR5A1,2:0.171813959002;FOXA2:0.16979780689;GTF2I:0.168381280553;AR:0.16628699979;POU2F1..3:0.148197069894;NFKB1_REL_RELA:0.13775411955;SRF:0.125350006256;RREB1:0.113788662892;LMO2:0.10590443694;ZBTB6:0.102705375868;GCM1,2:0.0933945108693;TFAP2B:0.0891639432199;MED-1{core}:0.0729964333029;NFE2:0.0546242880312;TFAP4:0.0539785708051;MTE{core}:0.048436823968;TOPORS:0.0461373285495;PAX2:0.0437752197465;NR1H4:0.0427252656593;PBX1:0.0398144568571;HIF1A:0.0365108745895;REST:0.0318126041327;LHX3,4:0.00238566519131;LEF1_TCF7_TCF7L1,2:-0.00829032561603;ZNF143:-0.00972024309538;POU3F1..4:-0.0323337869666;GATA6:-0.0493538078806;ETS1,2:-0.0541088783456;RXR{A,B,G}:-0.0914675350563;PAX5:-0.0927198903527;NR6A1:-0.100954735106;YY1:-0.101370605175;ESRRA:-0.114436039112;NKX2-2,8:-0.117220699402;OCT4_SOX2{dimer}:-0.117411840423;NR3C1:-0.12560309694;ALX4:-0.135825956505;ATF2:-0.14169161609;NFATC1..3:-0.146725566826;SOX2:-0.15186982131;HIC1:-0.16138979614;NFE2L2:-0.171396275976;RXRA_VDR{dimer}:-0.1763198182;MYBL2:-0.20212312506;FOXL1:-0.20609115246;CDC5L:-0.213695715632;MAFB:-0.220811036201;NHLH1,2:-0.258368003789;HMX1:-0.261978836029;GFI1:-0.264036985405;ATF5_CREB3:-0.268937002033;MEF2{A,B,C,D}:-0.27919285676;PATZ1:-0.280428997678;STAT2,4,6:-0.281843787341;NFY{A,B,C}:-0.288462604315;ESR1:-0.291445170668;HMGA1,2:-0.295966580279;ELF1,2,4:-0.319443575595;ZFP161:-0.346655675062;PRDM1:-0.361554363944;RBPJ:-0.361986567268;FOXN1:-0.373383607301;RUNX1..3:-0.374454497518;PRRX1,2:-0.388633339715;SPIB:-0.393728104669;NKX3-1:-0.398609683136;MZF1:-0.401927249166;SOX{8,9,10}:-0.40295745544;SPI1:-0.414079965691;E2F1..5:-0.426283277146;HNF4A_NR2F1,2:-0.427423923148;MYB:-0.433515995869;TLX2:-0.448008702675;NANOG{mouse}:-0.450999688776;ATF4:-0.470583026278;NRF1:-0.484960330319;POU5F1:-0.489381356138;UFEwm:-0.52125416359;ZNF384:-0.553077175883;FOXP3:-0.568438360117;RFX1:-0.573828532213;FOX{F1,F2,J1}:-0.581645582956;PITX1..3:-0.583580304942;HBP1_HMGB_SSRP1_UBTF:-0.594091229838;SREBF1,2:-0.594441710641;RFX2..5_RFXANK_RFXAP:-0.595855214796;IRF1,2:-0.612543113481;MYFfamily:-0.626228920747;SOX5:-0.637162039028;CUX2:-0.637783574178;TGIF1:-0.63926667491;CREB1:-0.671508469282;AHR_ARNT_ARNT2:-0.680020582417;FOXO1,3,4:-0.68404369631;PAX3,7:-0.692431254275;NFE2L1:-0.721536801751;FOX{D1,D2}:-0.776275307731;ATF6:-0.778507754891;EVI1:-0.78094230892;FOXQ1:-0.800404888607;EGR1..3:-0.809916655093;AIRE:-0.833456958244;BPTF:-0.83718936786;TAL1_TCF{3,4,12}:-0.842872502498;RORA:-0.860054711246;STAT1,3:-0.861259173423;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.878200012898;PPARG:-0.906444639939;PAX6:-0.969712286386;XBP1:-0.985231181586;BREu{core}:-1.0198182245;DMAP1_NCOR{1,2}_SMARC:-1.04284247622;CDX1,2,4:-1.07410313318;FOXP1:-1.08555199129;ZBTB16:-1.10323145608;DBP:-1.11053412174;FOX{I1,J2}:-1.15562254408;NKX6-1,2:-1.20331955261;HOXA9_MEIS1:-1.21134506856;GATA4:-1.26841043833;FOXD3:-1.39852886429;ALX1:-1.62922703851;IKZF2:-1.78398467998
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11220-116B5;search_select_hide=table117:FF:11220-116B5
}}
}}

Latest revision as of 16:25, 3 June 2020

Name:Sebocyte, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10847
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage29 years old adult
sexmale
ageNA
cell typesebocyte
cell lineNA
companyN/A
collaborationWeonju Lee (Kyungpook National University School of Medicine)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005631
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10847 CAGE DRX008447 DRR009319
Accession ID Hg19

Library idBAMCTSS
CNhs10847 DRZ000744 DRZ002129
Accession ID Hg38

Library idBAMCTSS
CNhs10847 DRZ012094 DRZ013479
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005631
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.GTAGAG sRNA-Seq DRX037004 DRR041370
Accession ID Hg19

Library idBAMCTSS
SRhi10002.GTAGAG DRZ007012


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0991
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.197
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00503
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.219
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.22
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.332
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.116
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.226
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.332
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00559
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0645
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.197
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.155
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10847

Jaspar motifP-value
MA0002.20.471
MA0003.10.554
MA0004.10.861
MA0006.10.0791
MA0007.10.557
MA0009.10.0649
MA0014.10.822
MA0017.10.309
MA0018.20.213
MA0019.10.61
MA0024.17.99244e-4
MA0025.10.852
MA0027.10.399
MA0028.10.713
MA0029.10.166
MA0030.10.937
MA0031.10.648
MA0035.20.672
MA0038.10.731
MA0039.20.0153
MA0040.10.578
MA0041.10.388
MA0042.10.871
MA0043.10.87
MA0046.10.297
MA0047.20.487
MA0048.10.919
MA0050.10.00857
MA0051.10.048
MA0052.10.514
MA0055.10.0254
MA0057.10.131
MA0058.10.723
MA0059.10.382
MA0060.10.778
MA0061.10.4
MA0062.20.164
MA0065.20.0322
MA0066.10.619
MA0067.10.00718
MA0068.10.361
MA0069.10.271
MA0070.10.375
MA0071.10.399
MA0072.10.69
MA0073.10.702
MA0074.10.669
MA0076.10.15
MA0077.10.472
MA0078.10.848
MA0079.20.233
MA0080.20.0646
MA0081.10.23
MA0083.10.376
MA0084.10.126
MA0087.10.792
MA0088.10.567
MA0090.10.00146
MA0091.10.847
MA0092.10.442
MA0093.10.804
MA0099.21.05774e-17
MA0100.10.298
MA0101.10.111
MA0102.20.165
MA0103.12.08682e-4
MA0104.20.73
MA0105.10.881
MA0106.11.03622e-9
MA0107.10.0843
MA0108.21.50248e-6
MA0111.10.755
MA0112.20.137
MA0113.10.362
MA0114.10.179
MA0115.10.812
MA0116.10.482
MA0117.10.374
MA0119.10.195
MA0122.10.922
MA0124.10.461
MA0125.10.0276
MA0131.10.205
MA0135.10.0953
MA0136.10.784
MA0137.20.373
MA0138.20.595
MA0139.10.919
MA0140.10.61
MA0141.10.857
MA0142.10.0856
MA0143.10.656
MA0144.10.638
MA0145.10.0459
MA0146.10.45
MA0147.10.915
MA0148.10.197
MA0149.10.159
MA0150.10.271
MA0152.10.832
MA0153.10.593
MA0154.10.0916
MA0155.10.393
MA0156.10.903
MA0157.10.428
MA0159.10.856
MA0160.10.714
MA0162.10.0512
MA0163.10.85
MA0164.10.262
MA0258.10.582
MA0259.10.284



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10847

Novel motifP-value
10.719
100.0756
1000.846
1010.0561
1020.623
1030.306
1040.506
1050.0049
1060.0527
1070.0197
1080.814
1090.0445
110.426
1100.306
1110.885
1120.511
1130.64
1140.802
1150.235
1160.696
1170.98
1180.647
1190.5
120.476
1200.36
1210.165
1220.0971
1230.0985
1240.231
1250.581
1260.923
1270.4
1280.458
1290.151
130.068
1300.0971
1310.694
1320.458
1330.0108
1340.93
1350.993
1360.704
1370.237
1380.834
1390.288
140.659
1400.831
1410.571
1420.187
1430.479
1440.14
1450.151
1460.00969
1470.316
1480.118
1490.473
150.985
1500.204
1510.355
1520.00868
1530.54
1540.535
1550.377
1560.572
1570.685
1580.274
1590.622
160.1
1600.179
1610.774
1620.791
1630.937
1640.731
1650.55
1660.578
1670.0665
1680.226
1690.054
170.0568
180.164
190.661
20.0915
200.894
210.471
220.348
230.316
240.0129
250.725
260.551
270.586
280.814
290.813
30.894
300.0481
310.746
320.905
330.26
340.402
350.362
360.411
370.44
380.359
390.0967
40.628
400.00484
410.671
420.79
430.521
440.213
450.0618
460.787
470.539
480.314
490.797
50.955
500.226
510.538
520.0611
530.941
540.606
550.851
560.209
570.383
580.814
590.169
60.078
600.112
610.786
620.608
630.114
640.509
650.568
660.297
670.412
680.632
690.959
70.307
700.31
710.358
720.88
730.015
740.0767
750.991
760.821
770.0056
780.331
790.854
80.41
800.232
810.261
820.772
830.731
840.689
850.879
860.452
870.0877
880.652
890.109
90.484
900.709
910.373
920.373
930.303
940.823
950.131
960.714
970.145
980.547
990.053



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10847


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000150 (glandular epithelial cell)
0000362 (epidermal cell)
0000154 (protein secreting cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000317 (sebum secreting cell)
0000622 (acinar cell)
1000448 (epithelial cell of sweat gland)
0002308 (epithelial cell of skin gland)
0002140 (acinar cell of sebaceous gland)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002419 (skin gland)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0002365 (exocrine gland)
0007771 (epidermis gland)
0002530 (gland)
0003297 (gland of integumental system)
0001821 (sebaceous gland)
0010317 (germ layer / neural crest derived structure)
0003487 (skin sebaceous gland)
0001820 (sweat gland)
0002330 (exocrine system)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000160 (human sebocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11220-116B5&oldid=4576277"