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{{f5samples
{{f5samples
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005723
|accession_numbers=CAGE;DRX008338;DRR009210;DRZ000635;DRZ002020;DRZ011985;DRZ013370
|accession_numbers_RNASeq=sRNA-Seq;DRX037149;DRR041515;DRZ007157
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|ancestors_in_disease_facet=
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|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000090
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
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|def=
|def=
|
|expression_enrichment_score=
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Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Melanocyte%2520-%2520light%252c%2520donor1.CNhs11303.11274-116H5.hg38.nobarcode.ctss.bed.gz
|id=FF:11274-116H5
|id=FF:11274-116H5
|is_a=EFO:0002091;;FF:0000002;;FF:0000090;;FF:0000210
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11274
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GCCAAT.11274
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11274
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GCCAAT.11274
|name=Melanocyte - light, donor1
|name=Melanocyte - light, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA104-R10n
|rna_catalog_number=CA104-R10n
Line 56: Line 82:
|rna_tube_id=116H5
|rna_tube_id=116H5
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10010.GCCAAT
|sample_age=Neonatal
|sample_age=Neonatal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.5999469329477e-234!GO:0005737;cytoplasm;2.97948081221439e-199!GO:0043231;intracellular membrane-bound organelle;6.08765990291911e-194!GO:0043227;membrane-bound organelle;6.90022767812546e-194!GO:0043226;organelle;1.85377640634836e-190!GO:0043229;intracellular organelle;4.34713548634985e-190!GO:0044444;cytoplasmic part;2.03680300273464e-147!GO:0044422;organelle part;4.31255429167956e-138!GO:0044446;intracellular organelle part;1.54647846228782e-136!GO:0044237;cellular metabolic process;4.91155096035658e-89!GO:0044238;primary metabolic process;1.78463451950772e-88!GO:0032991;macromolecular complex;5.24623616618521e-82!GO:0043170;macromolecule metabolic process;3.69819911196659e-75!GO:0005739;mitochondrion;6.79283028669054e-70!GO:0005634;nucleus;4.82411462133268e-64!GO:0030529;ribonucleoprotein complex;3.98533813514294e-63!GO:0043233;organelle lumen;2.65676783007929e-62!GO:0031974;membrane-enclosed lumen;2.65676783007929e-62!GO:0031090;organelle membrane;6.17753058419567e-62!GO:0005515;protein binding;6.38602453112222e-62!GO:0044428;nuclear part;1.5837145919744e-56!GO:0003723;RNA binding;4.29592820136447e-53!GO:0019538;protein metabolic process;2.44626605186327e-48!GO:0044429;mitochondrial part;5.89951858790195e-48!GO:0044260;cellular macromolecule metabolic process;1.09817790342826e-44!GO:0009058;biosynthetic process;1.72499416021614e-44!GO:0015031;protein transport;2.2158221280794e-44!GO:0033036;macromolecule localization;2.26676361283568e-44!GO:0043234;protein complex;2.47007994471039e-44!GO:0044267;cellular protein metabolic process;7.98941731841854e-44!GO:0031967;organelle envelope;1.47806834401673e-43!GO:0043283;biopolymer metabolic process;2.95058874679383e-43!GO:0031975;envelope;3.55678432549887e-43!GO:0008104;protein localization;8.87684616147568e-42!GO:0016043;cellular component organization and biogenesis;1.13594721248354e-41!GO:0045184;establishment of protein localization;2.37205998110616e-41!GO:0006412;translation;2.48786762779087e-41!GO:0005840;ribosome;1.83211886930975e-40!GO:0044249;cellular biosynthetic process;8.87029792214257e-38!GO:0009059;macromolecule biosynthetic process;1.32072120291707e-36!GO:0003735;structural constituent of ribosome;6.31085036416643e-36!GO:0046907;intracellular transport;3.17168038872657e-35!GO:0048770;pigment granule;3.56759733290191e-35!GO:0042470;melanosome;3.56759733290191e-35!GO:0006996;organelle organization and biogenesis;1.89859165252537e-34!GO:0031981;nuclear lumen;3.01868724693244e-34!GO:0006396;RNA processing;5.35241977354551e-34!GO:0005829;cytosol;1.17993243895984e-33!GO:0005740;mitochondrial envelope;2.22936124492733e-32!GO:0033279;ribosomal subunit;5.15853705776168e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.2207661799406e-31!GO:0031966;mitochondrial membrane;3.09694032204898e-30!GO:0006886;intracellular protein transport;8.60313658949393e-30!GO:0010467;gene expression;5.18385208121869e-29!GO:0019866;organelle inner membrane;8.56083074345091e-29!GO:0065003;macromolecular complex assembly;4.95283944269382e-28!GO:0000166;nucleotide binding;2.36044267613776e-27!GO:0005743;mitochondrial inner membrane;8.41551836397004e-27!GO:0012505;endomembrane system;1.2970839439263e-26!GO:0016071;mRNA metabolic process;3.93659996530307e-26!GO:0043228;non-membrane-bound organelle;3.48522332355428e-25!GO:0043232;intracellular non-membrane-bound organelle;3.48522332355428e-25!GO:0006259;DNA metabolic process;3.8811699224656e-25!GO:0022607;cellular component assembly;9.8356933487672e-25!GO:0051649;establishment of cellular localization;1.67009955177492e-24!GO:0051641;cellular localization;5.73111048036386e-24!GO:0016462;pyrophosphatase activity;2.37528151065086e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.00941364589937e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.00941364589937e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.05979206288999e-23!GO:0008380;RNA splicing;9.58598227840645e-23!GO:0017111;nucleoside-triphosphatase activity;1.24994749962273e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.77156233856202e-22!GO:0032553;ribonucleotide binding;3.68395135461626e-22!GO:0032555;purine ribonucleotide binding;3.68395135461626e-22!GO:0006397;mRNA processing;8.6595528044091e-22!GO:0017076;purine nucleotide binding;1.78173984248192e-21!GO:0006119;oxidative phosphorylation;1.80009651759979e-21!GO:0016874;ligase activity;4.41567901917623e-21!GO:0005783;endoplasmic reticulum;7.91528176297984e-21!GO:0005654;nucleoplasm;2.48794848893322e-20!GO:0031980;mitochondrial lumen;3.60272556613964e-20!GO:0005759;mitochondrial matrix;3.60272556613964e-20!GO:0044445;cytosolic part;3.61013066657667e-19!GO:0005524;ATP binding;5.41714303575944e-19!GO:0032559;adenyl ribonucleotide binding;2.11108799109592e-18!GO:0006512;ubiquitin cycle;3.32227794081584e-18!GO:0005794;Golgi apparatus;3.37837299287296e-18!GO:0043412;biopolymer modification;3.92194648384998e-18!GO:0007049;cell cycle;4.93585554893806e-18!GO:0044432;endoplasmic reticulum part;5.73571418974014e-18!GO:0008134;transcription factor binding;6.81990024474784e-18!GO:0044455;mitochondrial membrane part;1.34478794980673e-17!GO:0051186;cofactor metabolic process;1.54207905034394e-17!GO:0030554;adenyl nucleotide binding;1.56177321716885e-17!GO:0006457;protein folding;5.74487837993661e-17!GO:0044451;nucleoplasm part;7.90460813115066e-17!GO:0003676;nucleic acid binding;9.64017447302537e-17!GO:0006464;protein modification process;1.24261454413984e-16!GO:0005681;spliceosome;1.44530835103824e-16!GO:0015935;small ribosomal subunit;1.92999179357952e-16!GO:0015934;large ribosomal subunit;1.20034210266941e-15!GO:0044265;cellular macromolecule catabolic process;1.67445742833921e-15!GO:0005746;mitochondrial respiratory chain;5.26376840509273e-15!GO:0006605;protein targeting;1.13793422055937e-14!GO:0005730;nucleolus;1.41926660842618e-14!GO:0009057;macromolecule catabolic process;3.71262747502152e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.71262747502152e-14!GO:0022402;cell cycle process;3.72527121930403e-14!GO:0043285;biopolymer catabolic process;4.16650299322312e-14!GO:0044248;cellular catabolic process;5.25032020361769e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.21986918201086e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.42926114935607e-13!GO:0005789;endoplasmic reticulum membrane;1.87296976808758e-13!GO:0019941;modification-dependent protein catabolic process;1.87460505519698e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.87460505519698e-13!GO:0006732;coenzyme metabolic process;1.8790642726421e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.0051454224056e-13!GO:0022618;protein-RNA complex assembly;2.16061296613783e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.34072469117159e-13!GO:0003954;NADH dehydrogenase activity;2.34072469117159e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.34072469117159e-13!GO:0044257;cellular protein catabolic process;2.43542062087184e-13!GO:0043687;post-translational protein modification;3.20226695898482e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.56566044150513e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;6.82702294588905e-13!GO:0051276;chromosome organization and biogenesis;7.8024581139543e-13!GO:0042623;ATPase activity, coupled;9.09052632569791e-13!GO:0051082;unfolded protein binding;1.20160058807515e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.39392136934128e-12!GO:0000278;mitotic cell cycle;1.98799112092874e-12!GO:0030163;protein catabolic process;2.0002967245035e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.04793672543955e-12!GO:0016887;ATPase activity;2.44626127692802e-12!GO:0005635;nuclear envelope;2.44626127692802e-12!GO:0016070;RNA metabolic process;2.56195430750951e-12!GO:0006323;DNA packaging;3.83452453675718e-12!GO:0016192;vesicle-mediated transport;6.54928158666909e-12!GO:0016740;transferase activity;8.97701240832318e-12!GO:0003712;transcription cofactor activity;8.97701240832318e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.440145839646e-12!GO:0042773;ATP synthesis coupled electron transport;9.440145839646e-12!GO:0031988;membrane-bound vesicle;9.8421943187371e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.05367679786172e-11!GO:0045271;respiratory chain complex I;1.05367679786172e-11!GO:0005747;mitochondrial respiratory chain complex I;1.05367679786172e-11!GO:0008135;translation factor activity, nucleic acid binding;1.13462738351371e-11!GO:0005761;mitochondrial ribosome;1.20416755367685e-11!GO:0000313;organellar ribosome;1.20416755367685e-11!GO:0009259;ribonucleotide metabolic process;1.24657398735573e-11!GO:0006163;purine nucleotide metabolic process;1.28115523444412e-11!GO:0016023;cytoplasmic membrane-bound vesicle;1.37400481260041e-11!GO:0031965;nuclear membrane;1.4531215928818e-11!GO:0009150;purine ribonucleotide metabolic process;2.19763054152985e-11!GO:0005773;vacuole;2.42261544711024e-11!GO:0008639;small protein conjugating enzyme activity;2.5572698432411e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.9296273770527e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.9140755433259e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.36916505735971e-11!GO:0004842;ubiquitin-protein ligase activity;5.49650297367284e-11!GO:0006974;response to DNA damage stimulus;5.65281874500586e-11!GO:0048193;Golgi vesicle transport;5.97195986968368e-11!GO:0019787;small conjugating protein ligase activity;8.10274081288783e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.54559202943199e-11!GO:0008565;protein transporter activity;1.15005509234673e-10!GO:0006164;purine nucleotide biosynthetic process;1.34514336227447e-10!GO:0031982;vesicle;1.36457979808402e-10!GO:0044453;nuclear membrane part;1.43626887910207e-10!GO:0009199;ribonucleoside triphosphate metabolic process;1.59345773311808e-10!GO:0005768;endosome;2.0037962526098e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.21544537838238e-10!GO:0031410;cytoplasmic vesicle;2.35164100803647e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.35164100803647e-10!GO:0009144;purine nucleoside triphosphate metabolic process;2.35164100803647e-10!GO:0005694;chromosome;2.88946020539465e-10!GO:0009260;ribonucleotide biosynthetic process;3.19276915793226e-10!GO:0009141;nucleoside triphosphate metabolic process;3.4292550093218e-10!GO:0000323;lytic vacuole;4.53396346359609e-10!GO:0005764;lysosome;4.53396346359609e-10!GO:0044427;chromosomal part;4.96606730148937e-10!GO:0016881;acid-amino acid ligase activity;5.49790570359562e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.12308814953521e-10!GO:0006913;nucleocytoplasmic transport;8.24340856517326e-10!GO:0006399;tRNA metabolic process;8.7578731301886e-10!GO:0051188;cofactor biosynthetic process;1.24915585325677e-09!GO:0042254;ribosome biogenesis and assembly;1.45302490949744e-09!GO:0016787;hydrolase activity;1.49401406957343e-09!GO:0051169;nuclear transport;1.72306174335866e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.753641310412e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.753641310412e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.753641310412e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.79229135755137e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.21193469503323e-09!GO:0000375;RNA splicing, via transesterification reactions;2.21193469503323e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.21193469503323e-09!GO:0022403;cell cycle phase;2.93571417828432e-09!GO:0051726;regulation of cell cycle;3.07782898518732e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.32665474494378e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.32665474494378e-09!GO:0006333;chromatin assembly or disassembly;3.56915813479709e-09!GO:0046034;ATP metabolic process;3.67458745513887e-09!GO:0043038;amino acid activation;4.41088692311926e-09!GO:0006418;tRNA aminoacylation for protein translation;4.41088692311926e-09!GO:0043039;tRNA aminoacylation;4.41088692311926e-09!GO:0015986;ATP synthesis coupled proton transport;4.85152320941924e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.85152320941924e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.85152320941924e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.85152320941924e-09!GO:0009117;nucleotide metabolic process;5.42664172431076e-09!GO:0006446;regulation of translational initiation;6.11597453840786e-09!GO:0009056;catabolic process;6.43650787645349e-09!GO:0044431;Golgi apparatus part;6.56874022180368e-09!GO:0015630;microtubule cytoskeleton;7.65227676510939e-09!GO:0007067;mitosis;7.82870530367213e-09!GO:0000074;regulation of progression through cell cycle;8.34291242002019e-09!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.58645100045086e-09!GO:0000087;M phase of mitotic cell cycle;8.68955523752359e-09!GO:0006413;translational initiation;8.95158830882033e-09!GO:0006281;DNA repair;9.23904496806402e-09!GO:0012501;programmed cell death;9.23904496806402e-09!GO:0015078;hydrogen ion transmembrane transporter activity;9.53103498172259e-09!GO:0065004;protein-DNA complex assembly;1.08266188102395e-08!GO:0006915;apoptosis;1.15365164188785e-08!GO:0005643;nuclear pore;1.30399572164683e-08!GO:0006461;protein complex assembly;1.3668400822585e-08!GO:0019829;cation-transporting ATPase activity;1.501319018866e-08!GO:0008654;phospholipid biosynthetic process;1.58855801476864e-08!GO:0009055;electron carrier activity;1.63591315118747e-08!GO:0003743;translation initiation factor activity;1.67234888103972e-08!GO:0051301;cell division;1.89012572186579e-08!GO:0016568;chromatin modification;1.988341569403e-08!GO:0000785;chromatin;1.99210066949314e-08!GO:0004386;helicase activity;3.13249859609697e-08!GO:0003924;GTPase activity;3.19871243582354e-08!GO:0016469;proton-transporting two-sector ATPase complex;3.46629120891181e-08!GO:0009060;aerobic respiration;3.47937354498637e-08!GO:0065002;intracellular protein transport across a membrane;6.8757989342738e-08!GO:0006754;ATP biosynthetic process;7.08849653298009e-08!GO:0006753;nucleoside phosphate metabolic process;7.08849653298009e-08!GO:0045333;cellular respiration;7.45797181207673e-08!GO:0017038;protein import;7.45810183276751e-08!GO:0006366;transcription from RNA polymerase II promoter;7.60928553166623e-08!GO:0048475;coated membrane;8.84239712561347e-08!GO:0030117;membrane coat;8.84239712561347e-08!GO:0006793;phosphorus metabolic process;9.0825946408346e-08!GO:0006796;phosphate metabolic process;9.0825946408346e-08!GO:0008219;cell death;9.0825946408346e-08!GO:0016265;death;9.0825946408346e-08!GO:0005793;ER-Golgi intermediate compartment;1.0351878380472e-07!GO:0006260;DNA replication;1.0641876352325e-07!GO:0030120;vesicle coat;1.18999562579565e-07!GO:0030662;coated vesicle membrane;1.18999562579565e-07!GO:0046930;pore complex;1.34836125448451e-07!GO:0005798;Golgi-associated vesicle;1.40585394406235e-07!GO:0008026;ATP-dependent helicase activity;1.94269126297191e-07!GO:0005770;late endosome;1.97112827597047e-07!GO:0009108;coenzyme biosynthetic process;2.02138957896476e-07!GO:0031497;chromatin assembly;2.10451024566417e-07!GO:0016604;nuclear body;2.12400355310576e-07!GO:0006334;nucleosome assembly;2.25561280820794e-07!GO:0006099;tricarboxylic acid cycle;2.45292127176581e-07!GO:0046356;acetyl-CoA catabolic process;2.45292127176581e-07!GO:0031252;leading edge;2.828618436111e-07!GO:0007005;mitochondrion organization and biogenesis;3.99367676778054e-07!GO:0006084;acetyl-CoA metabolic process;4.19483485131123e-07!GO:0044440;endosomal part;5.1011090928765e-07!GO:0010008;endosome membrane;5.1011090928765e-07!GO:0000279;M phase;5.35108362657746e-07!GO:0009719;response to endogenous stimulus;7.69209003672724e-07!GO:0046467;membrane lipid biosynthetic process;8.73591008303652e-07!GO:0046474;glycerophospholipid biosynthetic process;9.57083394191212e-07!GO:0016563;transcription activator activity;9.65512840268938e-07!GO:0006364;rRNA processing;9.81369302468805e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.07492857841113e-06!GO:0006752;group transfer coenzyme metabolic process;1.18080450938404e-06!GO:0006916;anti-apoptosis;1.27170692470637e-06!GO:0032446;protein modification by small protein conjugation;1.31672029671413e-06!GO:0009109;coenzyme catabolic process;1.48038064449242e-06!GO:0016567;protein ubiquitination;1.51674894172272e-06!GO:0003713;transcription coactivator activity;1.62069735268895e-06!GO:0000139;Golgi membrane;1.80765841028549e-06!GO:0016779;nucleotidyltransferase activity;1.81620149004712e-06!GO:0051187;cofactor catabolic process;1.99682550924639e-06!GO:0006403;RNA localization;2.3290031967548e-06!GO:0016072;rRNA metabolic process;2.40958075394136e-06!GO:0050657;nucleic acid transport;2.51464506964997e-06!GO:0051236;establishment of RNA localization;2.51464506964997e-06!GO:0050658;RNA transport;2.51464506964997e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.97931481881201e-06!GO:0015399;primary active transmembrane transporter activity;2.97931481881201e-06!GO:0016310;phosphorylation;3.00211006705234e-06!GO:0005525;GTP binding;3.62145585146629e-06!GO:0048523;negative regulation of cellular process;4.26231323383816e-06!GO:0030659;cytoplasmic vesicle membrane;4.32634646455808e-06!GO:0005788;endoplasmic reticulum lumen;4.8608342209925e-06!GO:0006643;membrane lipid metabolic process;4.8608342209925e-06!GO:0016491;oxidoreductase activity;5.07827491455795e-06!GO:0006650;glycerophospholipid metabolic process;6.5976975788943e-06!GO:0051246;regulation of protein metabolic process;6.75894405526941e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.96033049295365e-06!GO:0042981;regulation of apoptosis;8.92338810368834e-06!GO:0050794;regulation of cellular process;9.22430090470052e-06!GO:0043067;regulation of programmed cell death;9.25998261272762e-06!GO:0003697;single-stranded DNA binding;9.52638328688996e-06!GO:0016607;nuclear speck;9.52638328688996e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.1146308002943e-05!GO:0044262;cellular carbohydrate metabolic process;1.13799713803606e-05!GO:0045259;proton-transporting ATP synthase complex;1.21364801732334e-05!GO:0044433;cytoplasmic vesicle part;1.50008809386455e-05!GO:0012506;vesicle membrane;1.62708343536552e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.65044684664178e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.65881105911743e-05!GO:0005769;early endosome;1.77368183272548e-05!GO:0048471;perinuclear region of cytoplasm;1.87132753468899e-05!GO:0043623;cellular protein complex assembly;1.87421323466255e-05!GO:0009165;nucleotide biosynthetic process;1.87421323466255e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.97753752242755e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;2.07571090889679e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.08159829213862e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.1166115137604e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.20744206110756e-05!GO:0005667;transcription factor complex;2.24171882887894e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.24313312111842e-05!GO:0045786;negative regulation of progression through cell cycle;2.25689057759223e-05!GO:0016564;transcription repressor activity;2.40199846361629e-05!GO:0003714;transcription corepressor activity;2.49999155020618e-05!GO:0051170;nuclear import;2.58930912193737e-05!GO:0051427;hormone receptor binding;2.67911273265951e-05!GO:0000151;ubiquitin ligase complex;2.96313650354348e-05!GO:0032561;guanyl ribonucleotide binding;3.58246947706148e-05!GO:0019001;guanyl nucleotide binding;3.58246947706148e-05!GO:0006606;protein import into nucleus;3.98115449904922e-05!GO:0019867;outer membrane;4.08821602480516e-05!GO:0048066;pigmentation during development;4.15579184300104e-05!GO:0042440;pigment metabolic process;4.20997354168632e-05!GO:0046148;pigment biosynthetic process;4.38734836761225e-05!GO:0043566;structure-specific DNA binding;4.9021800940464e-05!GO:0048519;negative regulation of biological process;5.0056062903345e-05!GO:0035257;nuclear hormone receptor binding;5.1894109626918e-05!GO:0031968;organelle outer membrane;5.23422313346617e-05!GO:0046519;sphingoid metabolic process;5.30646929930636e-05!GO:0043069;negative regulation of programmed cell death;5.33678867221597e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.51495245412479e-05!GO:0019899;enzyme binding;5.56986776824776e-05!GO:0006091;generation of precursor metabolites and energy;6.08961022857344e-05!GO:0051028;mRNA transport;6.13158703008469e-05!GO:0005905;coated pit;6.24798406841861e-05!GO:0043066;negative regulation of apoptosis;6.24798406841861e-05!GO:0005813;centrosome;7.25996228481848e-05!GO:0046489;phosphoinositide biosynthetic process;7.2681233030672e-05!GO:0000245;spliceosome assembly;7.40696890641438e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.58035433598408e-05!GO:0005774;vacuolar membrane;7.68498020390396e-05!GO:0005762;mitochondrial large ribosomal subunit;7.7353167434576e-05!GO:0000315;organellar large ribosomal subunit;7.7353167434576e-05!GO:0006818;hydrogen transport;8.35515759490491e-05!GO:0016853;isomerase activity;8.35515759490491e-05!GO:0051329;interphase of mitotic cell cycle;8.65585466779363e-05!GO:0008610;lipid biosynthetic process;8.98916825802891e-05!GO:0005741;mitochondrial outer membrane;9.29476943892434e-05!GO:0000786;nucleosome;9.34075406650315e-05!GO:0006672;ceramide metabolic process;0.000108774624290917!GO:0004298;threonine endopeptidase activity;0.000109426430289505!GO:0005815;microtubule organizing center;0.000128125296975889!GO:0007040;lysosome organization and biogenesis;0.000131289575652487!GO:0005048;signal sequence binding;0.000132704219229997!GO:0015992;proton transport;0.000148598650580982!GO:0005819;spindle;0.000157249634515752!GO:0005874;microtubule;0.000159994994622506!GO:0019843;rRNA binding;0.000199119404837873!GO:0006082;organic acid metabolic process;0.000203962716539821!GO:0003899;DNA-directed RNA polymerase activity;0.000203962716539821!GO:0019752;carboxylic acid metabolic process;0.000208117777909586!GO:0065009;regulation of a molecular function;0.000224379325086362!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000228370248059282!GO:0003724;RNA helicase activity;0.000228370248059282!GO:0051325;interphase;0.000229245163006698!GO:0015631;tubulin binding;0.000242493572445621!GO:0045454;cell redox homeostasis;0.000248169645418051!GO:0051789;response to protein stimulus;0.000257161233574068!GO:0006986;response to unfolded protein;0.000257161233574068!GO:0044437;vacuolar part;0.000257978057469955!GO:0007033;vacuole organization and biogenesis;0.000309065795617837!GO:0042802;identical protein binding;0.000350296497325283!GO:0031902;late endosome membrane;0.000375138801119963!GO:0016301;kinase activity;0.00038286691185026!GO:0007010;cytoskeleton organization and biogenesis;0.000420181786256365!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000422902955834947!GO:0006644;phospholipid metabolic process;0.000443329644001772!GO:0030133;transport vesicle;0.000443329644001772!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000473701791721201!GO:0033116;ER-Golgi intermediate compartment membrane;0.000493048371449323!GO:0006613;cotranslational protein targeting to membrane;0.000504717714385634!GO:0030027;lamellipodium;0.000527980655749618!GO:0051168;nuclear export;0.000533675679279636!GO:0005765;lysosomal membrane;0.000541963896878015!GO:0030658;transport vesicle membrane;0.000574389309597518!GO:0000059;protein import into nucleus, docking;0.000583284002278638!GO:0005885;Arp2/3 protein complex;0.000601049406293989!GO:0004674;protein serine/threonine kinase activity;0.000606671947874337!GO:0030118;clathrin coat;0.000630998459581713!GO:0043284;biopolymer biosynthetic process;0.00063762058538656!GO:0030867;rough endoplasmic reticulum membrane;0.000696062648535358!GO:0006612;protein targeting to membrane;0.000704588809300114!GO:0006509;membrane protein ectodomain proteolysis;0.000704588809300114!GO:0033619;membrane protein proteolysis;0.000704588809300114!GO:0000287;magnesium ion binding;0.000717899324975189!GO:0030384;phosphoinositide metabolic process;0.000760867967984806!GO:0007243;protein kinase cascade;0.000781396311124628!GO:0008250;oligosaccharyl transferase complex;0.000797112963556655!GO:0007034;vacuolar transport;0.000805021594822824!GO:0030176;integral to endoplasmic reticulum membrane;0.000889964857271542!GO:0022890;inorganic cation transmembrane transporter activity;0.0009221349802582!GO:0016859;cis-trans isomerase activity;0.00101852801979905!GO:0007006;mitochondrial membrane organization and biogenesis;0.00106089388166469!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00110390450918177!GO:0031324;negative regulation of cellular metabolic process;0.0011190917581123!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00112251091506577!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00120574609682547!GO:0004576;oligosaccharyl transferase activity;0.00122867659384686!GO:0050789;regulation of biological process;0.00125158804504228!GO:0051920;peroxiredoxin activity;0.00127804297902725!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00130135124726041!GO:0008092;cytoskeletal protein binding;0.00131212349944604!GO:0006497;protein amino acid lipidation;0.00140989093204657!GO:0030036;actin cytoskeleton organization and biogenesis;0.00142460994621283!GO:0042158;lipoprotein biosynthetic process;0.00154046826331833!GO:0035258;steroid hormone receptor binding;0.00157045896785791!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00157590602972569!GO:0031301;integral to organelle membrane;0.00164150123690971!GO:0048487;beta-tubulin binding;0.00170126039361788!GO:0008186;RNA-dependent ATPase activity;0.00173556105090888!GO:0006383;transcription from RNA polymerase III promoter;0.00176157423208765!GO:0007264;small GTPase mediated signal transduction;0.00180517025336873!GO:0030660;Golgi-associated vesicle membrane;0.0018180661883485!GO:0043681;protein import into mitochondrion;0.00186033220240241!GO:0033162;melanosome membrane;0.00186033220240241!GO:0045009;chitosome;0.00186033220240241!GO:0016197;endosome transport;0.00191568654223592!GO:0019748;secondary metabolic process;0.00193861790955074!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00193990657162962!GO:0005975;carbohydrate metabolic process;0.00201894183184759!GO:0006506;GPI anchor biosynthetic process;0.00203271379995627!GO:0000314;organellar small ribosomal subunit;0.00214986690099848!GO:0005763;mitochondrial small ribosomal subunit;0.00214986690099848!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00215891354281655!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00215891354281655!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00215891354281655!GO:0009892;negative regulation of metabolic process;0.00221388136357647!GO:0006839;mitochondrial transport;0.00230922670125508!GO:0031072;heat shock protein binding;0.00230922670125508!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00240864948955554!GO:0006626;protein targeting to mitochondrion;0.00244714586965009!GO:0016126;sterol biosynthetic process;0.00251895648550224!GO:0030663;COPI coated vesicle membrane;0.00252804308029062!GO:0030126;COPI vesicle coat;0.00252804308029062!GO:0030880;RNA polymerase complex;0.00257621954904838!GO:0044255;cellular lipid metabolic process;0.00259832758817363!GO:0001726;ruffle;0.00263316173915726!GO:0006891;intra-Golgi vesicle-mediated transport;0.00271896609655057!GO:0030137;COPI-coated vesicle;0.00280214932150662!GO:0003682;chromatin binding;0.00287881055890567!GO:0006505;GPI anchor metabolic process;0.00307161760528287!GO:0043021;ribonucleoprotein binding;0.00316011251682032!GO:0050790;regulation of catalytic activity;0.00322631406671353!GO:0006611;protein export from nucleus;0.00327755802565917!GO:0019318;hexose metabolic process;0.0033952594942021!GO:0030145;manganese ion binding;0.00342407568284951!GO:0018196;peptidyl-asparagine modification;0.0034414122734789!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0034414122734789!GO:0006520;amino acid metabolic process;0.0034414122734789!GO:0006414;translational elongation;0.00355753558318771!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00391200581916596!GO:0007041;lysosomal transport;0.00394033553174445!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00417644680811424!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00423945611977997!GO:0005996;monosaccharide metabolic process;0.00427466103462935!GO:0004004;ATP-dependent RNA helicase activity;0.00433437794627773!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00456813523029857!GO:0016311;dephosphorylation;0.00459887968779437!GO:0008632;apoptotic program;0.00460964054588767!GO:0030521;androgen receptor signaling pathway;0.00466420493272635!GO:0048069;eye pigmentation;0.0048512389738769!GO:0050662;coenzyme binding;0.00489342172882852!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00490626027281701!GO:0006261;DNA-dependent DNA replication;0.00492597766127695!GO:0030029;actin filament-based process;0.00494865427553772!GO:0043488;regulation of mRNA stability;0.00500353797195635!GO:0043487;regulation of RNA stability;0.00500353797195635!GO:0017166;vinculin binding;0.00518211456263066!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00519287726978413!GO:0000428;DNA-directed RNA polymerase complex;0.00519287726978413!GO:0003684;damaged DNA binding;0.00528666323802986!GO:0006338;chromatin remodeling;0.00528666323802986!GO:0048522;positive regulation of cellular process;0.00536944561201941!GO:0008361;regulation of cell size;0.00549189061181048!GO:0016791;phosphoric monoester hydrolase activity;0.00549189061181048!GO:0008287;protein serine/threonine phosphatase complex;0.00567057348206876!GO:0006402;mRNA catabolic process;0.00567108775795911!GO:0006665;sphingolipid metabolic process;0.00569096940711802!GO:0007051;spindle organization and biogenesis;0.00575936428264372!GO:0030119;AP-type membrane coat adaptor complex;0.00580397650900951!GO:0030131;clathrin adaptor complex;0.00588229635322338!GO:0005637;nuclear inner membrane;0.00612264158221403!GO:0030149;sphingolipid catabolic process;0.00669571239513641!GO:0006007;glucose catabolic process;0.00678424740510821!GO:0051252;regulation of RNA metabolic process;0.00691797003340693!GO:0048154;S100 beta binding;0.00703975747094771!GO:0045792;negative regulation of cell size;0.00708025659208387!GO:0016049;cell growth;0.00709384020532576!GO:0000075;cell cycle checkpoint;0.00724814266472091!GO:0008033;tRNA processing;0.00725864200218838!GO:0005869;dynactin complex;0.00767243760582768!GO:0006778;porphyrin metabolic process;0.00790214217295972!GO:0033013;tetrapyrrole metabolic process;0.00790214217295972!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0080059733827102!GO:0007050;cell cycle arrest;0.0080448831673618!GO:0003746;translation elongation factor activity;0.00832707837005909!GO:0033673;negative regulation of kinase activity;0.00852346390387721!GO:0006469;negative regulation of protein kinase activity;0.00852346390387721!GO:0016044;membrane organization and biogenesis;0.00859909778781576!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00891306165352856!GO:0030125;clathrin vesicle coat;0.00892684801038332!GO:0030665;clathrin coated vesicle membrane;0.00892684801038332!GO:0006779;porphyrin biosynthetic process;0.00912915712695334!GO:0033014;tetrapyrrole biosynthetic process;0.00912915712695334!GO:0008094;DNA-dependent ATPase activity;0.00937484970310282!GO:0030518;steroid hormone receptor signaling pathway;0.00948864857119133!GO:0030134;ER to Golgi transport vesicle;0.0095267731630778!GO:0030308;negative regulation of cell growth;0.00955962330199343!GO:0051348;negative regulation of transferase activity;0.00956292934083894!GO:0005684;U2-dependent spliceosome;0.00956292934083894!GO:0006726;eye pigment biosynthetic process;0.00959169059812211!GO:0042441;eye pigment metabolic process;0.00959169059812211!GO:0008022;protein C-terminus binding;0.00984414708698595!GO:0030132;clathrin coat of coated pit;0.00995498543540059!GO:0030127;COPII vesicle coat;0.00996343586542519!GO:0012507;ER to Golgi transport vesicle membrane;0.00996343586542519!GO:0006352;transcription initiation;0.00996343586542519!GO:0005657;replication fork;0.0101847885076752!GO:0006695;cholesterol biosynthetic process;0.0101919989350005!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0102727854213547!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0104481787954904!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0107664445292017!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0107664445292017!GO:0008139;nuclear localization sequence binding;0.0108717935148079!GO:0005791;rough endoplasmic reticulum;0.0108809249509176!GO:0007088;regulation of mitosis;0.0110756457160073!GO:0000118;histone deacetylase complex;0.0112445633691104!GO:0003678;DNA helicase activity;0.0114515166798619!GO:0016481;negative regulation of transcription;0.0117299651750204!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0122273012811571!GO:0006401;RNA catabolic process;0.0126881712079764!GO:0048037;cofactor binding;0.0126969289742569!GO:0051287;NAD binding;0.0131541755666996!GO:0051539;4 iron, 4 sulfur cluster binding;0.013173739596528!GO:0019222;regulation of metabolic process;0.0132069137123585!GO:0019206;nucleoside kinase activity;0.0133285395543348!GO:0003729;mRNA binding;0.0137394616453262!GO:0006595;polyamine metabolic process;0.0140228695400741!GO:0016363;nuclear matrix;0.0140688604759743!GO:0000030;mannosyltransferase activity;0.0144545589024068!GO:0006220;pyrimidine nucleotide metabolic process;0.0145643465960056!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0146103184286122!GO:0031901;early endosome membrane;0.0147073954476842!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0149084643754706!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.014930885731018!GO:0015002;heme-copper terminal oxidase activity;0.014930885731018!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.014930885731018!GO:0004129;cytochrome-c oxidase activity;0.014930885731018!GO:0001558;regulation of cell growth;0.0150222697177215!GO:0050681;androgen receptor binding;0.0150482521710504!GO:0006289;nucleotide-excision repair;0.0151336937622812!GO:0031529;ruffle organization and biogenesis;0.0155395399558176!GO:0042168;heme metabolic process;0.0156507333386552!GO:0001573;ganglioside metabolic process;0.0157115498725773!GO:0008017;microtubule binding;0.0158375496934589!GO:0050811;GABA receptor binding;0.0160591821655534!GO:0035035;histone acetyltransferase binding;0.0160959636463789!GO:0044452;nucleolar part;0.0164034756711955!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0165386242285287!GO:0007017;microtubule-based process;0.0166576138875291!GO:0004177;aminopeptidase activity;0.0167239152161451!GO:0003690;double-stranded DNA binding;0.0167239152161451!GO:0006807;nitrogen compound metabolic process;0.0170173741830654!GO:0045941;positive regulation of transcription;0.0170687897207485!GO:0005832;chaperonin-containing T-complex;0.0171776067633998!GO:0004722;protein serine/threonine phosphatase activity;0.0173791351539422!GO:0006783;heme biosynthetic process;0.0175098728706016!GO:0032508;DNA duplex unwinding;0.0175098728706016!GO:0032392;DNA geometric change;0.0175098728706016!GO:0006740;NADPH regeneration;0.0179611369502973!GO:0006098;pentose-phosphate shunt;0.0179611369502973!GO:0051087;chaperone binding;0.0184736477508417!GO:0031300;intrinsic to organelle membrane;0.0190196397695616!GO:0046983;protein dimerization activity;0.0190444577823884!GO:0045045;secretory pathway;0.0190644414052469!GO:0030140;trans-Golgi network transport vesicle;0.0190644414052469!GO:0016741;transferase activity, transferring one-carbon groups;0.0191404519732095!GO:0008234;cysteine-type peptidase activity;0.0192437126454981!GO:0000910;cytokinesis;0.0192445407898101!GO:0016584;nucleosome positioning;0.0196431309428167!GO:0009308;amine metabolic process;0.0196788756884237!GO:0006635;fatty acid beta-oxidation;0.0199669205720122!GO:0008637;apoptotic mitochondrial changes;0.0200493952460397!GO:0000049;tRNA binding;0.0200493952460397!GO:0051452;cellular pH reduction;0.0204649666814292!GO:0051453;regulation of cellular pH;0.0204649666814292!GO:0045851;pH reduction;0.0204649666814292!GO:0016408;C-acyltransferase activity;0.0208192035241725!GO:0007265;Ras protein signal transduction;0.0209930196697258!GO:0045926;negative regulation of growth;0.0216334430635274!GO:0000209;protein polyubiquitination;0.021719375789193!GO:0008168;methyltransferase activity;0.0218022274464624!GO:0008047;enzyme activator activity;0.0218579027323399!GO:0007242;intracellular signaling cascade;0.0220134190783618!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0221541501810713!GO:0010257;NADH dehydrogenase complex assembly;0.0221541501810713!GO:0033108;mitochondrial respiratory chain complex assembly;0.0221541501810713!GO:0006730;one-carbon compound metabolic process;0.0221634160241212!GO:0045893;positive regulation of transcription, DNA-dependent;0.0226563145918585!GO:0004721;phosphoprotein phosphatase activity;0.0232133225033863!GO:0045947;negative regulation of translational initiation;0.0236610983529667!GO:0000082;G1/S transition of mitotic cell cycle;0.0237919336778534!GO:0006629;lipid metabolic process;0.0239677312053584!GO:0000096;sulfur amino acid metabolic process;0.0246333176972011!GO:0046483;heterocycle metabolic process;0.0248951428028832!GO:0019377;glycolipid catabolic process;0.02500252011565!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0254146341739397!GO:0006470;protein amino acid dephosphorylation;0.0256853911646632!GO:0003711;transcription elongation regulator activity;0.0257752451028078!GO:0006582;melanin metabolic process;0.0261514379619302!GO:0006583;melanin biosynthetic process from tyrosine;0.0261514379619302!GO:0042438;melanin biosynthetic process;0.0261514379619302!GO:0008538;proteasome activator activity;0.0261906936405139!GO:0003923;GPI-anchor transamidase activity;0.0261906936405139!GO:0016255;attachment of GPI anchor to protein;0.0261906936405139!GO:0042765;GPI-anchor transamidase complex;0.0261906936405139!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0265029050795547!GO:0022406;membrane docking;0.0265519663761082!GO:0048278;vesicle docking;0.0265519663761082!GO:0048468;cell development;0.0267465694287026!GO:0006066;alcohol metabolic process;0.0271539770360343!GO:0042987;amyloid precursor protein catabolic process;0.027373563476268!GO:0051540;metal cluster binding;0.0285681298845455!GO:0051536;iron-sulfur cluster binding;0.0285681298845455!GO:0006904;vesicle docking during exocytosis;0.0288745122052278!GO:0042393;histone binding;0.0289355246937376!GO:0000775;chromosome, pericentric region;0.0289355246937376!GO:0043414;biopolymer methylation;0.0293634457148029!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0296598924418526!GO:0050931;pigment cell differentiation;0.0300618157364253!GO:0030318;melanocyte differentiation;0.0300618157364253!GO:0006405;RNA export from nucleus;0.0310214134186053!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0315477165673673!GO:0030496;midbody;0.0324506134830731!GO:0004192;cathepsin D activity;0.0324625888158178!GO:0004518;nuclease activity;0.0328853795847172!GO:0004003;ATP-dependent DNA helicase activity;0.0333738288464004!GO:0004680;casein kinase activity;0.0336499239759427!GO:0030522;intracellular receptor-mediated signaling pathway;0.0343393602190193!GO:0006268;DNA unwinding during replication;0.034405287999975!GO:0007030;Golgi organization and biogenesis;0.0344557064038463!GO:0046479;glycosphingolipid catabolic process;0.0346592169443722!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0350280897690263!GO:0046813;virion attachment, binding of host cell surface receptor;0.0350280897690263!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0350280897690263!GO:0030911;TPR domain binding;0.0351592147283169!GO:0040029;regulation of gene expression, epigenetic;0.0355732324633197!GO:0016569;covalent chromatin modification;0.0358434190550746!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0365653666441663!GO:0006607;NLS-bearing substrate import into nucleus;0.0368724409132867!GO:0006013;mannose metabolic process;0.0370520498745069!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0371672905767616!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0374588473115503!GO:0007021;tubulin folding;0.0376282886804669!GO:0009100;glycoprotein metabolic process;0.0376282886804669!GO:0008180;signalosome;0.0379844532355306!GO:0031124;mRNA 3'-end processing;0.0380327895886628!GO:0016860;intramolecular oxidoreductase activity;0.0390536881325034!GO:0030508;thiol-disulfide exchange intermediate activity;0.0390706574220816!GO:0016835;carbon-oxygen lyase activity;0.0392141770674796!GO:0051338;regulation of transferase activity;0.0394625828165155!GO:0046488;phosphatidylinositol metabolic process;0.0401395586537676!GO:0006984;ER-nuclear signaling pathway;0.0404141990089413!GO:0004527;exonuclease activity;0.040499996141657!GO:0030984;kininogen binding;0.0411392673266227!GO:0004213;cathepsin B activity;0.0411392673266227!GO:0019959;interleukin-8 binding;0.0419932499303706!GO:0010037;response to carbon dioxide;0.0419932499303706!GO:0006376;mRNA splice site selection;0.0419932499303706!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0419932499303706!GO:0048500;signal recognition particle;0.0420295254559113!GO:0008276;protein methyltransferase activity;0.0424561830194547!GO:0006096;glycolysis;0.0424561830194547!GO:0030503;regulation of cell redox homeostasis;0.0429075124699416!GO:0065007;biological regulation;0.0435179333320313!GO:0046466;membrane lipid catabolic process;0.0437743150350268!GO:0007346;regulation of progression through mitotic cell cycle;0.0440777131578089!GO:0043022;ribosome binding;0.0441747874574213!GO:0031970;organelle envelope lumen;0.0444699395889339!GO:0006661;phosphatidylinositol biosynthetic process;0.0444722798151365!GO:0004448;isocitrate dehydrogenase activity;0.0444722798151365!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0448732297331301!GO:0006310;DNA recombination;0.0451075906786077!GO:0043086;negative regulation of catalytic activity;0.0451075906786077!GO:0031628;opioid receptor binding;0.0451075906786077!GO:0031852;mu-type opioid receptor binding;0.0451075906786077!GO:0005938;cell cortex;0.0454105448895289!GO:0008415;acyltransferase activity;0.0467326676046501!GO:0016125;sterol metabolic process;0.0474241980687432!GO:0004300;enoyl-CoA hydratase activity;0.0474438591141711!GO:0006519;amino acid and derivative metabolic process;0.0477977630284714!GO:0004563;beta-N-acetylhexosaminidase activity;0.0479017499652796!GO:0005876;spindle microtubule;0.0482257403312197!GO:0004503;monophenol monooxygenase activity;0.04824852294844!GO:0016716;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen;0.04824852294844!GO:0043087;regulation of GTPase activity;0.0488495637089339!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.04928055270982!GO:0005784;translocon complex;0.049486181541988!GO:0006767;water-soluble vitamin metabolic process;0.049516438121392!GO:0008320;protein transmembrane transporter activity;0.049516438121392!GO:0044438;microbody part;0.049516438121392!GO:0044439;peroxisomal part;0.049516438121392!GO:0046365;monosaccharide catabolic process;0.0497699830639968!GO:0051098;regulation of binding;0.0498374606350891
|sample_id=11274
|sample_id=11274
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=skin
|sample_tissue=skin
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.74967664968;ZNF423:2.1811321858;SREBF1,2:1.98579571469;ESRRA:1.96742730837;NFE2L1:1.71244127693;PAX6:1.69944740423;bHLH_family:1.64551028314;NR5A1,2:1.61473162448;XCPE1{core}:1.4873822215;TFDP1:1.34873144567;NANOG:1.29931406885;GTF2A1,2:1.23182605649;HES1:1.16772039509;EN1,2:1.08679502981;PBX1:1.02674458008;RXR{A,B,G}:1.02313638375;HOX{A6,A7,B6,B7}:0.981284402651;EBF1:0.974094584164;POU3F1..4:0.950589041317;NR3C1:0.93628273082;PAX8:0.860750387967;SP1:0.854152948194;SOX{8,9,10}:0.772856556488;HOX{A4,D4}:0.761690201935;TFAP2B:0.740533688091;TFCP2:0.737176707948;ESR1:0.71439353048;NKX2-3_NKX2-5:0.678725646115;GFI1:0.616156170343;HIC1:0.573820578965;PAX5:0.557798931772;JUN:0.554233989682;TFAP2{A,C}:0.545645574246;POU2F1..3:0.528973012394;ZBTB6:0.497163713143;TP53:0.467565017379;ZNF143:0.466912955262;NFY{A,B,C}:0.465222076483;REST:0.446750781044;ZNF238:0.393977724549;PRRX1,2:0.361091158609;EGR1..3:0.300874024945;FOSL2:0.291819186364;FOXM1:0.288302764987;LHX3,4:0.287068233482;POU6F1:0.285677984481;TLX1..3_NFIC{dimer}:0.284786557085;HNF4A_NR2F1,2:0.263030072144;FOX{F1,F2,J1}:0.233162103489;CRX:0.230849890517;GTF2I:0.227575819559;RFX2..5_RFXANK_RFXAP:0.219150688432;FOX{D1,D2}:0.216908716827;SOX2:0.216516488992;STAT5{A,B}:0.209830715776;HMX1:0.204236922301;ELK1,4_GABP{A,B1}:0.176947015647;ZNF148:0.161158404225;PAX4:0.152566928053;IKZF1:0.152230300588;ZIC1..3:0.151017238361;PAX1,9:0.130779083741;RORA:0.112271245076;ATF4:0.0750333732954;ZFP161:0.0717212141984;VSX1,2:0.0636936009795;NRF1:0.0556804509218;ONECUT1,2:0.0547106606038;E2F1..5:0.0342469483583;ARID5B:0.0335327923203;BACH2:0.0267065197497;EP300:0.0180494590535;CUX2:0.00948419525167;AR:-0.0083842592655;GCM1,2:-0.0113240639506;LMO2:-0.0187260738768;ALX4:-0.0205648407451;GFI1B:-0.0241006965436;YY1:-0.0252584548597;MYB:-0.0256283157591;IRF7:-0.0386232906359;RFX1:-0.0518575367959;MEF2{A,B,C,D}:-0.0614973302458;POU1F1:-0.0710080067296;NHLH1,2:-0.0850631313308;GLI1..3:-0.0946610641021;RUNX1..3:-0.101149629327;NFE2:-0.102102762914;MED-1{core}:-0.104811327993;SPZ1:-0.121382232647;CDC5L:-0.123378936067;RREB1:-0.132426572655;RXRA_VDR{dimer}:-0.136074851794;FOS_FOS{B,L1}_JUN{B,D}:-0.138452938884;ELF1,2,4:-0.138546428521;PAX2:-0.143525392639;SOX17:-0.144728407838;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.159743799326;HNF1A:-0.170498103303;OCT4_SOX2{dimer}:-0.173044521326;XBP1:-0.185831814951;TFAP4:-0.185964042846;BREu{core}:-0.196335928293;HOX{A5,B5}:-0.203678425026;ATF5_CREB3:-0.207427495138;HOXA9_MEIS1:-0.21178005928;HAND1,2:-0.217819957542;NKX2-1,4:-0.228562177896;CREB1:-0.23079506697;TAL1_TCF{3,4,12}:-0.250921696831;GZF1:-0.251556788459;MAZ:-0.257753447531;EVI1:-0.261206597752;TEAD1:-0.262666161227;CEBPA,B_DDIT3:-0.268282610572;FOXQ1:-0.271580145329;TOPORS:-0.271887640778;NFE2L2:-0.282481367303;HBP1_HMGB_SSRP1_UBTF:-0.300727999508;LEF1_TCF7_TCF7L1,2:-0.302669431947;SPI1:-0.305745316564;UFEwm:-0.316962685094;ETS1,2:-0.323767720384;SPIB:-0.325080343119;STAT1,3:-0.328769774517;SMAD1..7,9:-0.335281244217;MTF1:-0.35144635321;HIF1A:-0.368615655175;NFIX:-0.375922840395;IRF1,2:-0.376781662432;STAT2,4,6:-0.393077179296;MAFB:-0.410705572457;MTE{core}:-0.414391921484;FOXA2:-0.449081862795;PRDM1:-0.45480918476;BPTF:-0.468624691876;NFKB1_REL_RELA:-0.485560794402;GATA6:-0.487496329121;TLX2:-0.504729614481;KLF4:-0.507758313505;ADNP_IRX_SIX_ZHX:-0.525019995914;AHR_ARNT_ARNT2:-0.532587778318;MYFfamily:-0.54477766747;SOX5:-0.551056398059;HLF:-0.554121897668;NFIL3:-0.556352050488;TEF:-0.566492049644;PATZ1:-0.597004454357;HSF1,2:-0.61332195016;DMAP1_NCOR{1,2}_SMARC:-0.629345872508;PAX3,7:-0.629645917815;SRF:-0.630511456693;NKX6-1,2:-0.631187855472;NR6A1:-0.636265053281;MYBL2:-0.636452909763;PPARG:-0.658591912934;NFATC1..3:-0.662013660449;NKX3-1:-0.66919184957;FOXL1:-0.669412149504;NKX3-2:-0.68438108586;SNAI1..3:-0.687673173245;TBX4,5:-0.689288831906;MZF1:-0.697692541157;TGIF1:-0.706227522632;ATF2:-0.758358646396;FOXO1,3,4:-0.779662249885;ZEB1:-0.830162534086;GATA4:-0.838288455091;PDX1:-0.873257481932;NANOG{mouse}:-0.902113821189;MYOD1:-0.906117909711;PITX1..3:-0.975180990737;RBPJ:-0.977532851948;ATF6:-1.02130702975;AIRE:-1.05065505102;TBP:-1.15826189756;FOXP3:-1.2393935706;ALX1:-1.2589855901;HMGA1,2:-1.2608836968;DBP:-1.30046006382;NKX2-2,8:-1.32666850987;FOXP1:-1.32934120476;ZBTB16:-1.41438520167;NR1H4:-1.48208343433;FOXN1:-1.48843809301;ZNF384:-1.51080183055;POU5F1:-1.56914062109;T:-1.59612902905;FOX{I1,J2}:-1.60099875809;IKZF2:-1.60665592862;CDX1,2,4:-1.85960653227;FOXD3:-2.09910089401
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.74967664968;ZNF423:2.1811321858;SREBF1,2:1.98579571469;ESRRA:1.96742730837;NFE2L1:1.71244127693;PAX6:1.69944740423;bHLH_family:1.64551028314;NR5A1,2:1.61473162448;XCPE1{core}:1.4873822215;TFDP1:1.34873144567;NANOG:1.29931406885;GTF2A1,2:1.23182605649;HES1:1.16772039509;EN1,2:1.08679502981;PBX1:1.02674458008;RXR{A,B,G}:1.02313638375;HOX{A6,A7,B6,B7}:0.981284402651;EBF1:0.974094584164;POU3F1..4:0.950589041317;NR3C1:0.93628273082;PAX8:0.860750387967;SP1:0.854152948194;SOX{8,9,10}:0.772856556488;HOX{A4,D4}:0.761690201935;TFAP2B:0.740533688091;TFCP2:0.737176707948;ESR1:0.71439353048;NKX2-3_NKX2-5:0.678725646115;GFI1:0.616156170343;HIC1:0.573820578965;PAX5:0.557798931772;JUN:0.554233989682;TFAP2{A,C}:0.545645574246;POU2F1..3:0.528973012394;ZBTB6:0.497163713143;TP53:0.467565017379;ZNF143:0.466912955262;NFY{A,B,C}:0.465222076483;REST:0.446750781044;ZNF238:0.393977724549;PRRX1,2:0.361091158609;EGR1..3:0.300874024945;FOSL2:0.291819186364;FOXM1:0.288302764987;LHX3,4:0.287068233482;POU6F1:0.285677984481;TLX1..3_NFIC{dimer}:0.284786557085;HNF4A_NR2F1,2:0.263030072144;FOX{F1,F2,J1}:0.233162103489;CRX:0.230849890517;GTF2I:0.227575819559;RFX2..5_RFXANK_RFXAP:0.219150688432;FOX{D1,D2}:0.216908716827;SOX2:0.216516488992;STAT5{A,B}:0.209830715776;HMX1:0.204236922301;ELK1,4_GABP{A,B1}:0.176947015647;ZNF148:0.161158404225;PAX4:0.152566928053;IKZF1:0.152230300588;ZIC1..3:0.151017238361;PAX1,9:0.130779083741;RORA:0.112271245076;ATF4:0.0750333732954;ZFP161:0.0717212141984;VSX1,2:0.0636936009795;NRF1:0.0556804509218;ONECUT1,2:0.0547106606038;E2F1..5:0.0342469483583;ARID5B:0.0335327923203;BACH2:0.0267065197497;EP300:0.0180494590535;CUX2:0.00948419525167;AR:-0.0083842592655;GCM1,2:-0.0113240639506;LMO2:-0.0187260738768;ALX4:-0.0205648407451;GFI1B:-0.0241006965436;YY1:-0.0252584548597;MYB:-0.0256283157591;IRF7:-0.0386232906359;RFX1:-0.0518575367959;MEF2{A,B,C,D}:-0.0614973302458;POU1F1:-0.0710080067296;NHLH1,2:-0.0850631313308;GLI1..3:-0.0946610641021;RUNX1..3:-0.101149629327;NFE2:-0.102102762914;MED-1{core}:-0.104811327993;SPZ1:-0.121382232647;CDC5L:-0.123378936067;RREB1:-0.132426572655;RXRA_VDR{dimer}:-0.136074851794;FOS_FOS{B,L1}_JUN{B,D}:-0.138452938884;ELF1,2,4:-0.138546428521;PAX2:-0.143525392639;SOX17:-0.144728407838;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.159743799326;HNF1A:-0.170498103303;OCT4_SOX2{dimer}:-0.173044521326;XBP1:-0.185831814951;TFAP4:-0.185964042846;BREu{core}:-0.196335928293;HOX{A5,B5}:-0.203678425026;ATF5_CREB3:-0.207427495138;HOXA9_MEIS1:-0.21178005928;HAND1,2:-0.217819957542;NKX2-1,4:-0.228562177896;CREB1:-0.23079506697;TAL1_TCF{3,4,12}:-0.250921696831;GZF1:-0.251556788459;MAZ:-0.257753447531;EVI1:-0.261206597752;TEAD1:-0.262666161227;CEBPA,B_DDIT3:-0.268282610572;FOXQ1:-0.271580145329;TOPORS:-0.271887640778;NFE2L2:-0.282481367303;HBP1_HMGB_SSRP1_UBTF:-0.300727999508;LEF1_TCF7_TCF7L1,2:-0.302669431947;SPI1:-0.305745316564;UFEwm:-0.316962685094;ETS1,2:-0.323767720384;SPIB:-0.325080343119;STAT1,3:-0.328769774517;SMAD1..7,9:-0.335281244217;MTF1:-0.35144635321;HIF1A:-0.368615655175;NFIX:-0.375922840395;IRF1,2:-0.376781662432;STAT2,4,6:-0.393077179296;MAFB:-0.410705572457;MTE{core}:-0.414391921484;FOXA2:-0.449081862795;PRDM1:-0.45480918476;BPTF:-0.468624691876;NFKB1_REL_RELA:-0.485560794402;GATA6:-0.487496329121;TLX2:-0.504729614481;KLF4:-0.507758313505;ADNP_IRX_SIX_ZHX:-0.525019995914;AHR_ARNT_ARNT2:-0.532587778318;MYFfamily:-0.54477766747;SOX5:-0.551056398059;HLF:-0.554121897668;NFIL3:-0.556352050488;TEF:-0.566492049644;PATZ1:-0.597004454357;HSF1,2:-0.61332195016;DMAP1_NCOR{1,2}_SMARC:-0.629345872508;PAX3,7:-0.629645917815;SRF:-0.630511456693;NKX6-1,2:-0.631187855472;NR6A1:-0.636265053281;MYBL2:-0.636452909763;PPARG:-0.658591912934;NFATC1..3:-0.662013660449;NKX3-1:-0.66919184957;FOXL1:-0.669412149504;NKX3-2:-0.68438108586;SNAI1..3:-0.687673173245;TBX4,5:-0.689288831906;MZF1:-0.697692541157;TGIF1:-0.706227522632;ATF2:-0.758358646396;FOXO1,3,4:-0.779662249885;ZEB1:-0.830162534086;GATA4:-0.838288455091;PDX1:-0.873257481932;NANOG{mouse}:-0.902113821189;MYOD1:-0.906117909711;PITX1..3:-0.975180990737;RBPJ:-0.977532851948;ATF6:-1.02130702975;AIRE:-1.05065505102;TBP:-1.15826189756;FOXP3:-1.2393935706;ALX1:-1.2589855901;HMGA1,2:-1.2608836968;DBP:-1.30046006382;NKX2-2,8:-1.32666850987;FOXP1:-1.32934120476;ZBTB16:-1.41438520167;NR1H4:-1.48208343433;FOXN1:-1.48843809301;ZNF384:-1.51080183055;POU5F1:-1.56914062109;T:-1.59612902905;FOX{I1,J2}:-1.60099875809;IKZF2:-1.60665592862;CDX1,2,4:-1.85960653227;FOXD3:-2.09910089401
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11274-116H5;search_select_hide=table117:FF:11274-116H5
}}
}}

Latest revision as of 16:30, 3 June 2020

Name:Melanocyte - light, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11303
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageinfant
sexmale
ageNeonatal
cell typemelanocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1097
catalog numberCA104-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005723
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11303 CAGE DRX008338 DRR009210
Accession ID Hg19

Library idBAMCTSS
CNhs11303 DRZ000635 DRZ002020
Accession ID Hg38

Library idBAMCTSS
CNhs11303 DRZ011985 DRZ013370
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005723
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.GCCAAT sRNA-Seq DRX037149 DRR041515
Accession ID Hg19

Library idBAMCTSS
SRhi10010.GCCAAT DRZ007157


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
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C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.875
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11303

Jaspar motifP-value
MA0002.20.882
MA0003.10.43
MA0004.16.38786e-6
MA0006.10.727
MA0007.10.242
MA0009.10.238
MA0014.10.261
MA0017.10.82
MA0018.20.0788
MA0019.10.0434
MA0024.10.284
MA0025.10.686
MA0027.10.42
MA0028.10.38
MA0029.10.75
MA0030.10.542
MA0031.10.813
MA0035.20.191
MA0038.10.0414
MA0039.20.0109
MA0040.10.911
MA0041.10.288
MA0042.10.939
MA0043.10.422
MA0046.10.744
MA0047.20.66
MA0048.10.532
MA0050.10.421
MA0051.10.616
MA0052.10.0142
MA0055.10.00634
MA0057.10.339
MA0058.18.80678e-9
MA0059.10.00683
MA0060.11.40372e-7
MA0061.12.03187e-4
MA0062.20.0112
MA0065.20.428
MA0066.10.802
MA0067.10.00356
MA0068.10.54
MA0069.10.43
MA0070.16.99089e-5
MA0071.10.773
MA0072.10.75
MA0073.10.999
MA0074.10.302
MA0076.10.283
MA0077.10.618
MA0078.10.871
MA0079.20.0527
MA0080.20.0121
MA0081.10.973
MA0083.10.135
MA0084.10.447
MA0087.10.416
MA0088.10.398
MA0090.10.45
MA0091.10.34
MA0092.10.221
MA0093.16.71341e-6
MA0099.20.983
MA0100.10.63
MA0101.10.00641
MA0102.27.70206e-4
MA0103.10.0493
MA0104.20.00569
MA0105.14.32971e-5
MA0106.10.344
MA0107.10.00317
MA0108.20.534
MA0111.10.465
MA0112.20.117
MA0113.10.861
MA0114.10.347
MA0115.10.76
MA0116.10.00147
MA0117.10.0542
MA0119.10.25
MA0122.10.958
MA0124.10.316
MA0125.10.0307
MA0131.10.839
MA0135.10.0371
MA0136.10.0308
MA0137.20.203
MA0138.20.717
MA0139.10.866
MA0140.10.574
MA0141.10.0691
MA0142.10.6
MA0143.10.443
MA0144.10.455
MA0145.10.559
MA0146.10.0201
MA0147.10.0315
MA0148.10.578
MA0149.10.324
MA0150.10.231
MA0152.10.252
MA0153.10.725
MA0154.10.0743
MA0155.10.503
MA0156.10.448
MA0157.10.852
MA0159.10.531
MA0160.10.0821
MA0162.10.821
MA0163.10.0696
MA0164.10.967
MA0258.10.867
MA0259.10.102



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11303

Novel motifP-value
10.339
100.0248
1000.601
1010.112
1020.131
1030.901
1040.272
1050.943
1060.465
1070.0779
1080.772
1090.303
110.528
1100.152
1110.0895
1120.618
1130.0106
1140.164
1150.859
1160.0859
1170.876
1180.666
1190.292
120.553
1200.91
1210.699
1220.265
1230.273
1240.613
1250.155
1260.336
1270.58
1280.728
1290.561
130.907
1300.21
1310.134
1320.448
1330.869
1340.865
1350.912
1360.0253
1370.679
1380.922
1390.00152
140.967
1400.45
1410.342
1420.809
1430.933
1440.815
1450.989
1460.0244
1470.866
1480.003
1490.977
150.77
1500.53
1510.68
1520.125
1530.115
1540.0693
1550.685
1560.915
1570.536
1580.369
1590.553
160.88
1600.253
1610.355
1620.15
1630.516
1640.216
1650.2
1660.353
1670.116
1680.448
1690.566
170.769
180.638
190.632
20.512
200.402
210.49
220.204
230.224
240.814
250.109
260.696
270.77
280.567
290.465
30.347
300.613
310.613
320.0069
330.923
340.522
350.0468
360.431
370.993
380.955
390.952
40.881
400.174
410.652
420.0974
430.26
440.711
450.784
460.646
470.498
480.428
490.193
50.325
500.405
510.849
520.432
530.115
540.653
550.13
560.768
570.821
580.00808
590.837
60.858
600.235
610.523
623.51316e-4
630.878
640.918
650.641
660.0707
670.722
680.348
690.452
70.196
700.176
710.125
720.554
730.02
740.362
750.876
760.779
770.996
780.032
790.366
80.574
800.467
810.316
820.34
830.59
840.355
850.518
860.875
870.00337
880.869
890.813
90.879
900.0798
910.887
920.0173
930.574
940.183
950.222
960.322
970.122
980.833
990.174



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11303


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000148 (melanocyte)
0002567 (light melanocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000090 (human light melanocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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