FF:11281-116I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005609 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005609 | ||
|accession_numbers=CAGE;DRX008452;DRR009324;DRZ000749;DRZ002134;DRZ012099;DRZ013484 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037062;DRR041428;DRZ007070 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.40!247.48!MYOG;;chr11:17741111..17741124,+!p1@MYOD1!2.21!162.79!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.92!81.98!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.79!99.86!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.73!193.15!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!1.56!34.90!MYOD1;;chr1:40105299..40105326,-!p1@HEYL!1.55!34.80!HEYL;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.77!SOX8;;chr8:72756637..72756664,-!p3@MSC!1.38!26.00!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.36!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.20!PKNOX2;;chr8:72756667..72756736,-!p2@MSC!1.32!30.84!MSC;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.82!HMGA2;;chr10:104001259..104001274,-!p1@PITX3!1.28!17.98!PITX3;;chr1:170632285..170632309,+!p1@PRRX1!1.27!19.82!PRRX1;;chr17:46132044..46132080,+!p4@NFE2L1!1.27!17.79!NFE2L1;;chr12:54393880..54393962,+!p1@HOXC9!1.27!17.79!HOXC9;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.95!HIC1;;chr7:15726296..15726315,-!p1@MEOX2!1.23!16.05!MEOX2;;chr19:50432453..50432468,+!p1@ATF5!1.20!810.78!ATF5;;chr10:131762504..131762555,-!p1@EBF3!1.20!14.69!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!1.19!14.60!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.18!63.61!FOXD1;;chr19:13134772..13134822,+!p2@NFIX!1.15!19.53!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.14!40.99!TWIST2;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.57!PKNOX2;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.47!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.12!12.28!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.48!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.30!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.07!16.43!PITX1;;chr12:81110684..81110700,+!p1@MYF5!1.07!10.83!MYF5;;chr1:119530493..119530572,-!p1@TBX15!1.06!10.44!TBX15;;chr8:116673894..116673913,-!p12@TRPS1!1.05!10.15!TRPS1;;chr7:27196267..27196311,-!p1@HOXA7!1.04!10.05!HOXA7;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.96!HAND2;;chr21:36421535..36421610,-!p2@RUNX1!1.03!34.90!RUNX1;;chr8:72756063..72756125,-!p1@MSC!1.01!18.75!MSC;;chr8:72756267..72756296,-!p4@MSC!1.01!13.73!MSC;;chr1:170632723..170632739,+!p8@PRRX1!1.01!9.18!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.00!277.06!HMGA1;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.76!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr11:17741084..17741094,+!p3@MYOD1!0.97!8.41!MYOD1;;chr2:45236540..45236577,-!p1@SIX2!0.96!8.12!SIX2;;chr10:104001289..104001310,-!p2@PITX3!0.95!7.83!PITX3;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.30!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.93!11.12!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.93!7.54!SOX11;;chr2:24714729..24714761,+!p1@NCOA1!0.93!7.44!NCOA1;;chr16:8962202..8962222,-!p3@CARHSP1!0.92!13.15!CARHSP1;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.51!SIX1;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.15!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.91!7.15!HOXA11;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.06!HOXA3;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.96!PITX1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.86!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!802.27!HMGA1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.16!ZNF521;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.57!TBX18;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.77!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.38!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!11.02!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.84!20.01!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.70!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!0.84!6.86!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.91!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.83!39.34!HIC1;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.04!TBX2;;chr12:125003087..125003141,-!p4@NCOR2!0.83!7.64!NCOR2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.77!BNC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.83!5.70!PEG3;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.54!BCL3;;chr8:72756023..72756055,-!p6@MSC!0.82!7.06!MSC;;chr15:57511589..57511608,+!p4@TCF12!0.82!5.61!TCF12;;chr19:2867325..2867348,+!p1@ZNF556!0.82!5.61!ZNF556;;chr4:26323764..26323821,+!p15@RBPJ!0.81!5.51!RBPJ;;chr8:72755987..72756002,-!p7@MSC!0.81!5.51!MSC;;chr1:40367668..40367684,-!p2@MYCL1!0.81!5.41!MYCL1;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.71!SNAI2;;chr18:3449821..3449860,+!p7@TGIF1!0.80!10.15!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.80!9.47!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.90!PRRX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.79!17.01!SMARCD3;;chr1:40367530..40367597,-!p1@MYCL1!0.79!9.76!MYCL1;;chr12:54410948..54410992,+!p3@HOXC5!0.79!5.22!HOXC5;;chr5:72744445..72744466,-!p2@FOXD1!0.78!8.70!FOXD1;;chr11:125034586..125034604,+!p3@PKNOX2!0.78!5.03!PKNOX2;;chr12:54402745..54402788,+!p1@HOXC8!0.78!5.03!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!0.78!5.03!PRRX2;;chr20:42543441..42543497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A3;;chr19:56879472..56879529,+!p2@ZNF542!0.21!2.42!ZNF542;;chr1:33721873..33721898,+!p3@ZNF362!0.21!2.03!ZNF362;;chr5:88179230..88179270,-!p4@MEF2C!0.21!2.03!MEF2C;;chr11:7041554..7041602,-!p1@ZNF214!0.21!2.03!ZNF214;;chr11:65686802..65686818,+!p6@DRAP1!0.21!1.74!DRAP1;;chr8:128750175..128750201,+!p8@MYC!0.21!1.74!MYC;;chr18:3449586..3449617,+!p8@TGIF1!0.21!1.55!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!0.21!1.45!TGIF1;;chr4:26322373..26322393,+!p4@RBPJ!0.21!1.35!RBPJ;;chr1:42800614..42800649,-!p5@FOXJ3!0.21!1.26!FOXJ3;;chr11:65687243..65687276,+!p8@DRAP1!0.21!1.16!DRAP1;;chr1:164528297..164528309,+!p9@PBX1!0.21!1.06!PBX1;;chr3:168865194..168865245,-!p3@MECOM!0.21!1.06!MECOM;;chr12:66218003..66218018,+!p9@HMGA2!0.21!0.97!HMGA2;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.21!0.97!ZNF775;;chr10:35416125..35416138,+!p10@CREM!0.21!0.87!CREM;;chr17:38504601..38504634,+!p9@RARA!0.21!0.87!RARA;;chr17:41623259..41623278,-!p7@ETV4!0.21!0.87!ETV4;;chr12:51611888..51611917,-!p3@POU6F1!0.21!0.77!POU6F1;;chr22:24129138..24129201,+!p1@SMARCB1!0.20!70.76!SMARCB1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!68.15!SSRP1;;chr11:65101305..65101359,+!p1@DPF2!0.20!55.97!DPF2;;chr14:74353530..74353571,+!p1@ZNF410!0.20!26.10!ZNF410;;chr2:217277169..217277266,+!p1@SMARCAL1!0.20!14.21!SMARCAL1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.20!13.15!ZNF595;;chr16:3162557..3162600,+!p1@ZNF205!0.20!11.60!ZNF205;;chr5:132299339..132299359,-!p4@AFF4!0.20!5.90!AFF4;;chr11:65686732..65686756,+!p2@DRAP1!0.20!5.32!DRAP1;;chr3:52719546..52719636,-!p3@PBRM1!0.20!4.35!PBRM1;;chr10:63809134..63809145,+!p6@ARID5B!0.20!2.51!ARID5B;;chr2:71127699..71127744,+!p1@VAX2!0.20!2.13!VAX2;;chr8:86089417..86089440,+!p2@E2F5!0.20!2.03!E2F5;;chr10:114710218..114710229,+!p4@TCF7L2!0.20!2.03!TCF7L2;;chr11:615570..615721,-!p2@IRF7!0.20!2.03!IRF7;;chr12:122516678..122516687,+!p3@MLXIP!0.20!1.93!MLXIP;;chr7:27135591..27135658,-!p1@HOXA1!0.20!1.93!HOXA1;;chr8:116681123..116681143,-!p4@TRPS1!0.20!1.93!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.20!1.84!AEBP1;;chr12:124457725..124457736,+!p2@ZNF664!0.20!1.74!ZNF664;;chr19:56152471..56152482,+!p6@ZNF580!0.20!1.45!ZNF580;;chr5:88179195..88179224,-!p3@MEF2C!0.20!1.45!MEF2C;;chr6:45390442..45390479,+!p8@RUNX2!0.20!1.35!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!0.20!1.26!HOXB7;;chr20:35201857..35201882,+!p4@TGIF2!0.20!1.16!TGIF2;;chr11:65430586..65430593,-!p5@RELA!0.20!0.77!RELA;;chr9:4300004..4300015,-!p6@GLIS3!0.20!0.77!GLIS3;;chrX:84499056..84499078,+!p3@ZNF711!0.20!0.58!ZNF711;;chr10:28034739..28034756,-!p1@MKX!0.20!0.58!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.20!0.58!ZEB1;;chr10:45496320..45496336,+!p3@ZNF22!0.20!0.58!ZNF22;;chr11:16629261..16629284,-!p1@SOX6!0.20!0.58!SOX6;;chr12:115121802..115121814,-!p5@TBX3!0.20!0.58!TBX3;;chr12:54378864..54378884,+!p6@HOXC10!0.20!0.58!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.20!0.58!HOXC10;;chr12:96588425..96588432,+!p8@ELK3!0.20!0.58!ELK3;;chr14:61190754..61190776,-!p6@SIX4!0.20!0.58!SIX4;;chr14:69260437..69260442,-!p10@ZFP36L1!0.20!0.58!ZFP36L1;;chr14:74256981..74256994,-!p16@C14orf43!0.20!0.58!C14orf43;;chr19:45254481..45254495,+!p13@BCL3!0.20!0.58!BCL3;;chr19:50435704..50435718,+!p11@ATF5!0.20!0.58!ATF5;;chr19:7584204..7584218,+!p9@ZNF358!0.20!0.58!ZNF358;;chr1:10856694..10856715,-!p3@CASZ1!0.20!0.58!CASZ1;;chr1:197886665..197886732,+!p3@LHX9!0.20!0.58!LHX9;;chr1:214161328..214161348,+!p2@PROX1!0.20!0.58!PROX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.20!0.58!TSHZ2;;chr21:36260325..36260341,-!p14@RUNX1!0.20!0.58!RUNX1;;chr22:41721853..41721874,+!p6@ZC3H7B!0.20!0.58!ZC3H7B;;chr2:176987415..176987425,+!p4@HOXD9!0.20!0.58!HOXD9;;chr2:177001366..177001379,+!p4@HOXD3!0.20!0.58!HOXD3;;chr2:28635317..28635334,+!p10@FOSL2!0.20!0.58!FOSL2;;chr2:46612891..46612907,+!p10@EPAS1!0.20!0.58!EPAS1;;chr3:12329464..12329472,+!p6@PPARG!0.20!0.58!PPARG;;chr3:147111505..147111529,+!p6@ZIC1!0.20!0.58!ZIC1;;chr3:25469815..25469866,+!p3@RARB!0.20!0.58!RARB;;chr3:52002412..52002433,-!p7@PCBP4!0.20!0.58!PCBP4;;chr4:174451350..174451363,-!p3@HAND2!0.20!0.58!HAND2;;chr17:46128217..46128243,+!p11@NFE2L1!0.20!0.58!NFE2L1;;chr17:59477403..59477414,+!p4@TBX2!0.20!0.58!TBX2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.20!0.58!ZBTB7C;;chr19:16435705..16435726,+!p3@KLF2!0.20!0.58!KLF2;;chr19:31840699..31840720,-!p7@TSHZ3!0.20!0.58!TSHZ3;;chr19:3572758..3572795,+!p7@HMG20B!0.20!0.58!HMG20B;;chr5:142780189..142780223,-!p6@NR3C1!0.20!0.58!NR3C1;;chr5:88179271..88179286,-!p7@MEF2C!0.20!0.58!MEF2C;;chr7:14025855..14025890,-!p6@ETV1!0.20!0.58!ETV1;;chr7:14029034..14029087,-!p5@ETV1!0.20!0.58!ETV1;;chr7:27179814..27179840,-!p4@HOXA3!0.20!0.58!HOXA3;;chr8:60031840..60031869,-!p5@TOX!0.20!0.58!TOX;;chr8:72755345..72755349,-!p14@MSC!0.20!0.58!MSC;;chr8:93115445..93115462,-!p7@RUNX1T1!0.20!0.58!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.19!206.01!HIF1A;;chr14:69259772..69259790,-!p1@ZFP36L1!0.19!145.20!ZFP36L1;;chr8:145515263..145515299,+!p1@HSF1!0.19!99.76!HSF1;;chr1:156470556..156470643,-!p1@MEF2D!0.19!55.97!MEF2D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| |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!2.40!247.48!MYOG;;chr11:17741111..17741124,+!p1@MYOD1!2.21!162.79!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.92!81.98!EBF2;;chr15:57511609..57511651,+!p2@TCF12!1.79!99.86!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr14:61116183..61116208,-!p1@SIX1!1.73!193.15!SIX1;;chr11:17741254..17741282,+!p2@MYOD1!1.56!34.90!MYOD1;;chr1:40105299..40105326,-!p1@HEYL!1.55!34.80!HEYL;;chr16:1031762..1031781,+!p1@SOX8!1.49!29.77!SOX8;;chr8:72756637..72756664,-!p3@MSC!1.38!26.00!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.33!27.36!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.20!PKNOX2;;chr8:72756667..72756736,-!p2@MSC!1.32!30.84!MSC;;chr12:66218255..66218304,+!p3@HMGA2!1.29!48.82!HMGA2;;chr10:104001259..104001274,-!p1@PITX3!1.28!17.98!PITX3;;chr1:170632285..170632309,+!p1@PRRX1!1.27!19.82!PRRX1;;chr17:46132044..46132080,+!p4@NFE2L1!1.27!17.79!NFE2L1;;chr12:54393880..54393962,+!p1@HOXC9!1.27!17.79!HOXC9;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.95!HIC1;;chr7:15726296..15726315,-!p1@MEOX2!1.23!16.05!MEOX2;;chr19:50432453..50432468,+!p1@ATF5!1.20!810.78!ATF5;;chr10:131762504..131762555,-!p1@EBF3!1.20!14.69!EBF3;;chr7:27205136..27205164,-!p1@HOXA9!1.19!14.60!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.18!63.61!FOXD1;;chr19:13134772..13134822,+!p2@NFIX!1.15!19.53!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.14!40.99!TWIST2;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.57!PKNOX2;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.47!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.12!12.28!HOXC5;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!61.48!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!1.11!55.30!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.07!16.43!PITX1;;chr12:81110684..81110700,+!p1@MYF5!1.07!10.83!MYF5;;chr1:119530493..119530572,-!p1@TBX15!1.06!10.44!TBX15;;chr8:116673894..116673913,-!p12@TRPS1!1.05!10.15!TRPS1;;chr7:27196267..27196311,-!p1@HOXA7!1.04!10.05!HOXA7;;chr4:174450089..174450153,-!p2@HAND2!1.04!9.96!HAND2;;chr21:36421535..36421610,-!p2@RUNX1!1.03!34.90!RUNX1;;chr8:72756063..72756125,-!p1@MSC!1.01!18.75!MSC;;chr8:72756267..72756296,-!p4@MSC!1.01!13.73!MSC;;chr1:170632723..170632739,+!p8@PRRX1!1.01!9.18!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.00!277.06!HMGA1;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.76!ZFP106;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr11:17741084..17741094,+!p3@MYOD1!0.97!8.41!MYOD1;;chr2:45236540..45236577,-!p1@SIX2!0.96!8.12!SIX2;;chr10:104001289..104001310,-!p2@PITX3!0.95!7.83!PITX3;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.30!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.93!11.12!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.93!7.54!SOX11;;chr2:24714729..24714761,+!p1@NCOA1!0.93!7.44!NCOA1;;chr16:8962202..8962222,-!p3@CARHSP1!0.92!13.15!CARHSP1;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.51!SIX1;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.15!RFX8;;chr7:27224842..27224872,-!p1@HOXA11!0.91!7.15!HOXA11;;chr7:27192185..27192209,-!p1@HOXA3!0.91!7.06!HOXA3;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.96!PITX1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.86!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!802.27!HMGA1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.16!ZNF521;;chr6:85474299..85474324,-!p1@TBX18!0.89!12.57!TBX18;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.77!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.38!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.14!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!11.02!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.84!20.01!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.84!11.70!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!0.84!6.86!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.91!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.83!39.34!HIC1;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.04!TBX2;;chr12:125003087..125003141,-!p4@NCOR2!0.83!7.64!NCOR2;;chr15:83953397..83953425,-!p1@BNC1!0.83!6.77!BNC1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.83!5.70!PEG3;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.54!BCL3;;chr8:72756023..72756055,-!p6@MSC!0.82!7.06!MSC;;chr15:57511589..57511608,+!p4@TCF12!0.82!5.61!TCF12;;chr19:2867325..2867348,+!p1@ZNF556!0.82!5.61!ZNF556;;chr4:26323764..26323821,+!p15@RBPJ!0.81!5.51!RBPJ;;chr8:72755987..72756002,-!p7@MSC!0.81!5.51!MSC;;chr1:40367668..40367684,-!p2@MYCL1!0.81!5.41!MYCL1;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.71!SNAI2;;chr18:3449821..3449860,+!p7@TGIF1!0.80!10.15!TGIF1;;chr2:239756739..239756755,+!p2@TWIST2!0.80!9.47!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!0.80!5.90!PRRX1;;chr7:150945754..150945789,-!p2@SMARCD3!0.79!17.01!SMARCD3;;chr1:40367530..40367597,-!p1@MYCL1!0.79!9.76!MYCL1;;chr12:54410948..54410992,+!p3@HOXC5!0.79!5.22!HOXC5;;chr5:72744445..72744466,-!p2@FOXD1!0.78!8.70!FOXD1;;chr11:125034586..125034604,+!p3@PKNOX2!0.78!5.03!PKNOX2;;chr12:54402745..54402788,+!p1@HOXC8!0.78!5.03!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!0.78!5.03!PRRX2;;chr20:42543441..42543497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A3;;chr19:56879472..56879529,+!p2@ZNF542!0.21!2.42!ZNF542;;chr1:33721873..33721898,+!p3@ZNF362!0.21!2.03!ZNF362;;chr5:88179230..88179270,-!p4@MEF2C!0.21!2.03!MEF2C;;chr11:7041554..7041602,-!p1@ZNF214!0.21!2.03!ZNF214;;chr11:65686802..65686818,+!p6@DRAP1!0.21!1.74!DRAP1;;chr8:128750175..128750201,+!p8@MYC!0.21!1.74!MYC;;chr18:3449586..3449617,+!p8@TGIF1!0.21!1.55!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!0.21!1.45!TGIF1;;chr4:26322373..26322393,+!p4@RBPJ!0.21!1.35!RBPJ;;chr1:42800614..42800649,-!p5@FOXJ3!0.21!1.26!FOXJ3;;chr11:65687243..65687276,+!p8@DRAP1!0.21!1.16!DRAP1;;chr1:164528297..164528309,+!p9@PBX1!0.21!1.06!PBX1;;chr3:168865194..168865245,-!p3@MECOM!0.21!1.06!MECOM;;chr12:66218003..66218018,+!p9@HMGA2!0.21!0.97!HMGA2;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.21!0.97!ZNF775;;chr10:35416125..35416138,+!p10@CREM!0.21!0.87!CREM;;chr17:38504601..38504634,+!p9@RARA!0.21!0.87!RARA;;chr17:41623259..41623278,-!p7@ETV4!0.21!0.87!ETV4;;chr12:51611888..51611917,-!p3@POU6F1!0.21!0.77!POU6F1;;chr22:24129138..24129201,+!p1@SMARCB1!0.20!70.76!SMARCB1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!68.15!SSRP1;;chr11:65101305..65101359,+!p1@DPF2!0.20!55.97!DPF2;;chr14:74353530..74353571,+!p1@ZNF410!0.20!26.10!ZNF410;;chr2:217277169..217277266,+!p1@SMARCAL1!0.20!14.21!SMARCAL1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.20!13.15!ZNF595;;chr16:3162557..3162600,+!p1@ZNF205!0.20!11.60!ZNF205;;chr5:132299339..132299359,-!p4@AFF4!0.20!5.90!AFF4;;chr11:65686732..65686756,+!p2@DRAP1!0.20!5.32!DRAP1;;chr3:52719546..52719636,-!p3@PBRM1!0.20!4.35!PBRM1;;chr10:63809134..63809145,+!p6@ARID5B!0.20!2.51!ARID5B;;chr2:71127699..71127744,+!p1@VAX2!0.20!2.13!VAX2;;chr8:86089417..86089440,+!p2@E2F5!0.20!2.03!E2F5;;chr10:114710218..114710229,+!p4@TCF7L2!0.20!2.03!TCF7L2;;chr11:615570..615721,-!p2@IRF7!0.20!2.03!IRF7;;chr12:122516678..122516687,+!p3@MLXIP!0.20!1.93!MLXIP;;chr7:27135591..27135658,-!p1@HOXA1!0.20!1.93!HOXA1;;chr8:116681123..116681143,-!p4@TRPS1!0.20!1.93!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.20!1.84!AEBP1;;chr12:124457725..124457736,+!p2@ZNF664!0.20!1.74!ZNF664;;chr19:56152471..56152482,+!p6@ZNF580!0.20!1.45!ZNF580;;chr5:88179195..88179224,-!p3@MEF2C!0.20!1.45!MEF2C;;chr6:45390442..45390479,+!p8@RUNX2!0.20!1.35!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!0.20!1.26!HOXB7;;chr20:35201857..35201882,+!p4@TGIF2!0.20!1.16!TGIF2;;chr11:65430586..65430593,-!p5@RELA!0.20!0.77!RELA;;chr9:4300004..4300015,-!p6@GLIS3!0.20!0.77!GLIS3;;chrX:84499056..84499078,+!p3@ZNF711!0.20!0.58!ZNF711;;chr10:28034739..28034756,-!p1@MKX!0.20!0.58!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.20!0.58!ZEB1;;chr10:45496320..45496336,+!p3@ZNF22!0.20!0.58!ZNF22;;chr11:16629261..16629284,-!p1@SOX6!0.20!0.58!SOX6;;chr12:115121802..115121814,-!p5@TBX3!0.20!0.58!TBX3;;chr12:54378864..54378884,+!p6@HOXC10!0.20!0.58!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.20!0.58!HOXC10;;chr12:96588425..96588432,+!p8@ELK3!0.20!0.58!ELK3;;chr14:61190754..61190776,-!p6@SIX4!0.20!0.58!SIX4;;chr14:69260437..69260442,-!p10@ZFP36L1!0.20!0.58!ZFP36L1;;chr14:74256981..74256994,-!p16@C14orf43!0.20!0.58!C14orf43;;chr19:45254481..45254495,+!p13@BCL3!0.20!0.58!BCL3;;chr19:50435704..50435718,+!p11@ATF5!0.20!0.58!ATF5;;chr19:7584204..7584218,+!p9@ZNF358!0.20!0.58!ZNF358;;chr1:10856694..10856715,-!p3@CASZ1!0.20!0.58!CASZ1;;chr1:197886665..197886732,+!p3@LHX9!0.20!0.58!LHX9;;chr1:214161328..214161348,+!p2@PROX1!0.20!0.58!PROX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.20!0.58!TSHZ2;;chr21:36260325..36260341,-!p14@RUNX1!0.20!0.58!RUNX1;;chr22:41721853..41721874,+!p6@ZC3H7B!0.20!0.58!ZC3H7B;;chr2:176987415..176987425,+!p4@HOXD9!0.20!0.58!HOXD9;;chr2:177001366..177001379,+!p4@HOXD3!0.20!0.58!HOXD3;;chr2:28635317..28635334,+!p10@FOSL2!0.20!0.58!FOSL2;;chr2:46612891..46612907,+!p10@EPAS1!0.20!0.58!EPAS1;;chr3:12329464..12329472,+!p6@PPARG!0.20!0.58!PPARG;;chr3:147111505..147111529,+!p6@ZIC1!0.20!0.58!ZIC1;;chr3:25469815..25469866,+!p3@RARB!0.20!0.58!RARB;;chr3:52002412..52002433,-!p7@PCBP4!0.20!0.58!PCBP4;;chr4:174451350..174451363,-!p3@HAND2!0.20!0.58!HAND2;;chr17:46128217..46128243,+!p11@NFE2L1!0.20!0.58!NFE2L1;;chr17:59477403..59477414,+!p4@TBX2!0.20!0.58!TBX2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.20!0.58!ZBTB7C;;chr19:16435705..16435726,+!p3@KLF2!0.20!0.58!KLF2;;chr19:31840699..31840720,-!p7@TSHZ3!0.20!0.58!TSHZ3;;chr19:3572758..3572795,+!p7@HMG20B!0.20!0.58!HMG20B;;chr5:142780189..142780223,-!p6@NR3C1!0.20!0.58!NR3C1;;chr5:88179271..88179286,-!p7@MEF2C!0.20!0.58!MEF2C;;chr7:14025855..14025890,-!p6@ETV1!0.20!0.58!ETV1;;chr7:14029034..14029087,-!p5@ETV1!0.20!0.58!ETV1;;chr7:27179814..27179840,-!p4@HOXA3!0.20!0.58!HOXA3;;chr8:60031840..60031869,-!p5@TOX!0.20!0.58!TOX;;chr8:72755345..72755349,-!p14@MSC!0.20!0.58!MSC;;chr8:93115445..93115462,-!p7@RUNX1T1!0.20!0.58!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.19!206.01!HIF1A;;chr14:69259772..69259790,-!p1@ZFP36L1!0.19!145.20!ZFP36L1;;chr8:145515263..145515299,+!p1@HSF1!0.19!99.76!HSF1;;chr1:156470556..156470643,-!p1@MEF2D!0.19!55.97!MEF2D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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor1.CNhs11083.11281-116I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11281-116I3 | |id=FF:11281-116I3 | ||
|is_a=EFO:0002091;;FF:0000162 | |is_a=EFO:0002091;;FF:0000162 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11083 | |||
|library_id_phase_based=2:CNhs11083 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11281 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTAGAG.11281 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11281 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTAGAG.11281 | |||
|name=Skeletal Muscle Cells, donor1 | |name=Skeletal Muscle Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11083,LSID724,release008,COMPLETED | |profile_hcage=CNhs11083,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA150-R10f | |rna_catalog_number=CA150-R10f | ||
| Line 58: | Line 82: | ||
|rna_tube_id=116I3 | |rna_tube_id=116I3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GTAGAG | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.70609303723;SPZ1:1.52355570399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.49343221303;GTF2A1,2:1.27100804029;NHLH1,2:1.23891535184;EN1,2:1.22534312355;MYBL2:1.22518024761;PATZ1:1.13143357791;ZNF238:1.09518648336;TFAP4:0.995306078112;HES1:0.992344236172;SRF:0.992092808649;HOX{A4,D4}:0.953588146383;GFI1B:0.951523102981;RREB1:0.949778928974;TAL1_TCF{3,4,12}:0.889434201819;PAX5:0.875264636509;GLI1..3:0.858840276329;TFAP2{A,C}:0.779939662754;MYOD1:0.757085280957;FOXD3:0.733267542186;TEAD1:0.728421682677;NR3C1:0.718377497093;GCM1,2:0.694956268152;TLX1..3_NFIC{dimer}:0.677592425717;FOXL1:0.67051845921;bHLH_family:0.667548046843;IKZF1:0.66709375777;KLF4:0.657588839563;EVI1:0.656488643461;TBP:0.656429516403;TP53:0.647025621368;ZIC1..3:0.646634034442;MZF1:0.6307545892;PRDM1:0.629270971698;GTF2I:0.606654468245;LHX3,4:0.603088216671;TFAP2B:0.596101538027;UFEwm:0.594978615567;ALX4:0.584237651711;NKX6-1,2:0.548503189966;MEF2{A,B,C,D}:0.546780206408;ZNF143:0.536718738883;LMO2:0.532640641142;TFCP2:0.52941776784;NKX2-2,8:0.519113502134;NKX3-1:0.516434441542;NFIX:0.501327154599;YY1:0.492064617948;NR6A1:0.48633507516;ELK1,4_GABP{A,B1}:0.485338987685;ZNF148:0.484568504979;HAND1,2:0.444370520835;MAZ:0.430417724667;GATA4:0.424060337464;ZNF384:0.415686968053;POU3F1..4:0.41402697327;NANOG{mouse}:0.413847175585;TBX4,5:0.397403622618;ESR1:0.393838292756;SMAD1..7,9:0.393387880326;ZNF423:0.39331617351;MYFfamily:0.38005750363;SOX17:0.376106171355;NR1H4:0.348315005396;CEBPA,B_DDIT3:0.345178555236;HLF:0.343201920892;MED-1{core}:0.340416982901;HOX{A5,B5}:0.333236333857;MTE{core}:0.324267360609;GZF1:0.301692826826;CDC5L:0.301322125022;PBX1:0.295352959128;HIC1:0.294004995289;NFATC1..3:0.286605506151;RFX1:0.271346935352;PAX1,9:0.264731125315;STAT2,4,6:0.256314372025;RXRA_VDR{dimer}:0.253060428761;SOX{8,9,10}:0.245889127578;EBF1:0.241204715915;ADNP_IRX_SIX_ZHX:0.237599259281;SP1:0.221195473082;STAT1,3:0.218516003715;ZBTB6:0.216679521041;PPARG:0.200094557222;CRX:0.188771640522;NFIL3:0.180498434742;JUN:0.169819019008;REST:0.166467162626;AHR_ARNT_ARNT2:0.154547276899;TOPORS:0.154387228766;NFE2L1:0.127806175218;POU6F1:0.119233372073;XCPE1{core}:0.11530076906;NFE2L2:0.109256079105;HSF1,2:0.0882852718157;BACH2:0.0874525714445;BPTF:0.0792995114562;NRF1:0.075391727636;SOX2:0.0695734727992;FOXM1:0.0677975658321;RBPJ:0.066969712776;HMX1:0.0666821912778;DMAP1_NCOR{1,2}_SMARC:0.0549839836195;CDX1,2,4:0.0528824108976;LEF1_TCF7_TCF7L1,2:0.0518814827019;NR5A1,2:0.0410601471077;TFDP1:0.0148081011051;DBP:0.0144364462913;SOX5:-0.00589313809055;RUNX1..3:-0.00730436260903;EP300:-0.0114443709677;PAX8:-0.0145176534922;HNF1A:-0.0160540026501;CUX2:-0.0231838456743;GFI1:-0.0367791795472;FOXO1,3,4:-0.0470417980422;MAFB:-0.0568941729171;PRRX1,2:-0.0594376543756;FOXQ1:-0.0665911848351;ZFP161:-0.0714943973549;FOS_FOS{B,L1}_JUN{B,D}:-0.0720774819177;NFE2:-0.0809903027864;TGIF1:-0.0844421831823;TEF:-0.110646756333;T:-0.110930509003;ESRRA:-0.127223107752;HOX{A6,A7,B6,B7}:-0.130381937835;EGR1..3:-0.143955518281;CREB1:-0.145146832411;NKX2-3_NKX2-5:-0.168051329463;NFKB1_REL_RELA:-0.173250896756;E2F1..5:-0.177683585697;FOXP1:-0.177959767816;ONECUT1,2:-0.18091979169;PDX1:-0.192169308887;HIF1A:-0.207420450935;IRF1,2:-0.210500939889;FOSL2:-0.224889276919;MYB:-0.24390967448;POU2F1..3:-0.25643677066;XBP1:-0.258034258567;RFX2..5_RFXANK_RFXAP:-0.27361445769;AIRE:-0.279007628554;ATF2:-0.28170118858;SNAI1..3:-0.298894457883;STAT5{A,B}:-0.321634344639;MTF1:-0.323278834046;FOX{F1,F2,J1}:-0.325134228002;ATF4:-0.331303900081;HNF4A_NR2F1,2:-0.344576018752;AR:-0.382976615025;PAX6:-0.399950853862;POU1F1:-0.40675367015;POU5F1:-0.419314548544;TLX2:-0.421435635906;IRF7:-0.428223439915;NKX3-2:-0.439016886089;PAX2:-0.44721247413;NANOG:-0.47749645609;HMGA1,2:-0.479026018799;SPI1:-0.486878611591;PITX1..3:-0.504726763144;ARID5B:-0.508600133302;ATF6:-0.51929172402;SPIB:-0.531471167123;NFY{A,B,C}:-0.554737837235;ELF1,2,4:-0.563447149192;FOX{D1,D2}:-0.578197465175;PAX4:-0.600773474598;BREu{core}:-0.607123405268;ZEB1:-0.607552222736;IKZF2:-0.616549096814;ALX1:-0.619093034983;OCT4_SOX2{dimer}:-0.621137628278;PAX3,7:-0.632349082914;NKX2-1,4:-0.651358610336;RORA:-0.655353691205;FOXA2:-0.658269669947;ETS1,2:-0.66768586594;HBP1_HMGB_SSRP1_UBTF:-0.691712283599;VSX1,2:-0.708172583561;SREBF1,2:-0.716762984774;FOXP3:-0.726436603363;GATA6:-0.731511227833;FOXN1:-0.840043934939;ATF5_CREB3:-0.862302982002;FOX{I1,J2}:-1.09365176531;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18851064258;ZBTB16:-1.21658069388;HOXA9_MEIS1:-1.42550162421 | |top_motifs=RXR{A,B,G}:1.70609303723;SPZ1:1.52355570399;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.49343221303;GTF2A1,2:1.27100804029;NHLH1,2:1.23891535184;EN1,2:1.22534312355;MYBL2:1.22518024761;PATZ1:1.13143357791;ZNF238:1.09518648336;TFAP4:0.995306078112;HES1:0.992344236172;SRF:0.992092808649;HOX{A4,D4}:0.953588146383;GFI1B:0.951523102981;RREB1:0.949778928974;TAL1_TCF{3,4,12}:0.889434201819;PAX5:0.875264636509;GLI1..3:0.858840276329;TFAP2{A,C}:0.779939662754;MYOD1:0.757085280957;FOXD3:0.733267542186;TEAD1:0.728421682677;NR3C1:0.718377497093;GCM1,2:0.694956268152;TLX1..3_NFIC{dimer}:0.677592425717;FOXL1:0.67051845921;bHLH_family:0.667548046843;IKZF1:0.66709375777;KLF4:0.657588839563;EVI1:0.656488643461;TBP:0.656429516403;TP53:0.647025621368;ZIC1..3:0.646634034442;MZF1:0.6307545892;PRDM1:0.629270971698;GTF2I:0.606654468245;LHX3,4:0.603088216671;TFAP2B:0.596101538027;UFEwm:0.594978615567;ALX4:0.584237651711;NKX6-1,2:0.548503189966;MEF2{A,B,C,D}:0.546780206408;ZNF143:0.536718738883;LMO2:0.532640641142;TFCP2:0.52941776784;NKX2-2,8:0.519113502134;NKX3-1:0.516434441542;NFIX:0.501327154599;YY1:0.492064617948;NR6A1:0.48633507516;ELK1,4_GABP{A,B1}:0.485338987685;ZNF148:0.484568504979;HAND1,2:0.444370520835;MAZ:0.430417724667;GATA4:0.424060337464;ZNF384:0.415686968053;POU3F1..4:0.41402697327;NANOG{mouse}:0.413847175585;TBX4,5:0.397403622618;ESR1:0.393838292756;SMAD1..7,9:0.393387880326;ZNF423:0.39331617351;MYFfamily:0.38005750363;SOX17:0.376106171355;NR1H4:0.348315005396;CEBPA,B_DDIT3:0.345178555236;HLF:0.343201920892;MED-1{core}:0.340416982901;HOX{A5,B5}:0.333236333857;MTE{core}:0.324267360609;GZF1:0.301692826826;CDC5L:0.301322125022;PBX1:0.295352959128;HIC1:0.294004995289;NFATC1..3:0.286605506151;RFX1:0.271346935352;PAX1,9:0.264731125315;STAT2,4,6:0.256314372025;RXRA_VDR{dimer}:0.253060428761;SOX{8,9,10}:0.245889127578;EBF1:0.241204715915;ADNP_IRX_SIX_ZHX:0.237599259281;SP1:0.221195473082;STAT1,3:0.218516003715;ZBTB6:0.216679521041;PPARG:0.200094557222;CRX:0.188771640522;NFIL3:0.180498434742;JUN:0.169819019008;REST:0.166467162626;AHR_ARNT_ARNT2:0.154547276899;TOPORS:0.154387228766;NFE2L1:0.127806175218;POU6F1:0.119233372073;XCPE1{core}:0.11530076906;NFE2L2:0.109256079105;HSF1,2:0.0882852718157;BACH2:0.0874525714445;BPTF:0.0792995114562;NRF1:0.075391727636;SOX2:0.0695734727992;FOXM1:0.0677975658321;RBPJ:0.066969712776;HMX1:0.0666821912778;DMAP1_NCOR{1,2}_SMARC:0.0549839836195;CDX1,2,4:0.0528824108976;LEF1_TCF7_TCF7L1,2:0.0518814827019;NR5A1,2:0.0410601471077;TFDP1:0.0148081011051;DBP:0.0144364462913;SOX5:-0.00589313809055;RUNX1..3:-0.00730436260903;EP300:-0.0114443709677;PAX8:-0.0145176534922;HNF1A:-0.0160540026501;CUX2:-0.0231838456743;GFI1:-0.0367791795472;FOXO1,3,4:-0.0470417980422;MAFB:-0.0568941729171;PRRX1,2:-0.0594376543756;FOXQ1:-0.0665911848351;ZFP161:-0.0714943973549;FOS_FOS{B,L1}_JUN{B,D}:-0.0720774819177;NFE2:-0.0809903027864;TGIF1:-0.0844421831823;TEF:-0.110646756333;T:-0.110930509003;ESRRA:-0.127223107752;HOX{A6,A7,B6,B7}:-0.130381937835;EGR1..3:-0.143955518281;CREB1:-0.145146832411;NKX2-3_NKX2-5:-0.168051329463;NFKB1_REL_RELA:-0.173250896756;E2F1..5:-0.177683585697;FOXP1:-0.177959767816;ONECUT1,2:-0.18091979169;PDX1:-0.192169308887;HIF1A:-0.207420450935;IRF1,2:-0.210500939889;FOSL2:-0.224889276919;MYB:-0.24390967448;POU2F1..3:-0.25643677066;XBP1:-0.258034258567;RFX2..5_RFXANK_RFXAP:-0.27361445769;AIRE:-0.279007628554;ATF2:-0.28170118858;SNAI1..3:-0.298894457883;STAT5{A,B}:-0.321634344639;MTF1:-0.323278834046;FOX{F1,F2,J1}:-0.325134228002;ATF4:-0.331303900081;HNF4A_NR2F1,2:-0.344576018752;AR:-0.382976615025;PAX6:-0.399950853862;POU1F1:-0.40675367015;POU5F1:-0.419314548544;TLX2:-0.421435635906;IRF7:-0.428223439915;NKX3-2:-0.439016886089;PAX2:-0.44721247413;NANOG:-0.47749645609;HMGA1,2:-0.479026018799;SPI1:-0.486878611591;PITX1..3:-0.504726763144;ARID5B:-0.508600133302;ATF6:-0.51929172402;SPIB:-0.531471167123;NFY{A,B,C}:-0.554737837235;ELF1,2,4:-0.563447149192;FOX{D1,D2}:-0.578197465175;PAX4:-0.600773474598;BREu{core}:-0.607123405268;ZEB1:-0.607552222736;IKZF2:-0.616549096814;ALX1:-0.619093034983;OCT4_SOX2{dimer}:-0.621137628278;PAX3,7:-0.632349082914;NKX2-1,4:-0.651358610336;RORA:-0.655353691205;FOXA2:-0.658269669947;ETS1,2:-0.66768586594;HBP1_HMGB_SSRP1_UBTF:-0.691712283599;VSX1,2:-0.708172583561;SREBF1,2:-0.716762984774;FOXP3:-0.726436603363;GATA6:-0.731511227833;FOXN1:-0.840043934939;ATF5_CREB3:-0.862302982002;FOX{I1,J2}:-1.09365176531;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18851064258;ZBTB16:-1.21658069388;HOXA9_MEIS1:-1.42550162421 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11281-116I3;search_select_hide=table117:FF:11281-116I3 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Skeletal Muscle Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11083 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11083
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11083
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.286 |
| 10 | 10 | 0.0288 |
| 100 | 100 | 0.917 |
| 101 | 101 | 0.389 |
| 102 | 102 | 0.789 |
| 103 | 103 | 0.693 |
| 104 | 104 | 0.168 |
| 105 | 105 | 0.762 |
| 106 | 106 | 0.261 |
| 107 | 107 | 0.154 |
| 108 | 108 | 0.735 |
| 109 | 109 | 0.641 |
| 11 | 11 | 0.996 |
| 110 | 110 | 0.263 |
| 111 | 111 | 0.192 |
| 112 | 112 | 0.273 |
| 113 | 113 | 0.669 |
| 114 | 114 | 0.205 |
| 115 | 115 | 0.806 |
| 116 | 116 | 0.112 |
| 117 | 117 | 0.867 |
| 118 | 118 | 0.163 |
| 119 | 119 | 0.842 |
| 12 | 12 | 0.497 |
| 120 | 120 | 0.29 |
| 121 | 121 | 0.737 |
| 122 | 122 | 0.0247 |
| 123 | 123 | 0.00166 |
| 124 | 124 | 0.247 |
| 125 | 125 | 0.869 |
| 126 | 126 | 0.441 |
| 127 | 127 | 0.432 |
| 128 | 128 | 0.579 |
| 129 | 129 | 0.482 |
| 13 | 13 | 0.96 |
| 130 | 130 | 0.0847 |
| 131 | 131 | 0.883 |
| 132 | 132 | 0.268 |
| 133 | 133 | 0.522 |
| 134 | 134 | 0.067 |
| 135 | 135 | 0.648 |
| 136 | 136 | 0.138 |
| 137 | 137 | 0.044 |
| 138 | 138 | 0.153 |
| 139 | 139 | 0.86 |
| 14 | 14 | 0.508 |
| 140 | 140 | 0.03 |
| 141 | 141 | 0.0276 |
| 142 | 142 | 0.78 |
| 143 | 143 | 0.136 |
| 144 | 144 | 0.66 |
| 145 | 145 | 0.49 |
| 146 | 146 | 0.481 |
| 147 | 147 | 0.638 |
| 148 | 148 | 0.313 |
| 149 | 149 | 0.0493 |
| 15 | 15 | 0.131 |
| 150 | 150 | 0.893 |
| 151 | 151 | 0.784 |
| 152 | 152 | 0.0501 |
| 153 | 153 | 0.372 |
| 154 | 154 | 0.18 |
| 155 | 155 | 0.0481 |
| 156 | 156 | 0.217 |
| 157 | 157 | 0.98 |
| 158 | 158 | 0.0128 |
| 159 | 159 | 0.616 |
| 16 | 16 | 0.596 |
| 160 | 160 | 0.765 |
| 161 | 161 | 0.672 |
| 162 | 162 | 0.0315 |
| 163 | 163 | 0.176 |
| 164 | 164 | 0.935 |
| 165 | 165 | 0.526 |
| 166 | 166 | 0.998 |
| 167 | 167 | 0.0654 |
| 168 | 168 | 0.836 |
| 169 | 169 | 0.117 |
| 17 | 17 | 0.675 |
| 18 | 18 | 0.39 |
| 19 | 19 | 0.0807 |
| 2 | 2 | 0.159 |
| 20 | 20 | 0.383 |
| 21 | 21 | 0.337 |
| 22 | 22 | 0.335 |
| 23 | 23 | 0.565 |
| 24 | 24 | 0.363 |
| 25 | 25 | 0.193 |
| 26 | 26 | 0.611 |
| 27 | 27 | 0.553 |
| 28 | 28 | 0.0766 |
| 29 | 29 | 0.939 |
| 3 | 3 | 0.579 |
| 30 | 30 | 0.216 |
| 31 | 31 | 0.774 |
| 32 | 32 | 0.00808 |
| 33 | 33 | 0.829 |
| 34 | 34 | 0.541 |
| 35 | 35 | 0.519 |
| 36 | 36 | 0.163 |
| 37 | 37 | 0.31 |
| 38 | 38 | 0.269 |
| 39 | 39 | 0.111 |
| 4 | 4 | 0.595 |
| 40 | 40 | 0.343 |
| 41 | 41 | 0.011 |
| 42 | 42 | 0.518 |
| 43 | 43 | 0.512 |
| 44 | 44 | 0.745 |
| 45 | 45 | 0.793 |
| 46 | 46 | 0.823 |
| 47 | 47 | 0.659 |
| 48 | 48 | 0.761 |
| 49 | 49 | 0.314 |
| 5 | 5 | 0.231 |
| 50 | 50 | 0.375 |
| 51 | 51 | 0.708 |
| 52 | 52 | 0.667 |
| 53 | 53 | 0.364 |
| 54 | 54 | 0.91 |
| 55 | 55 | 0.225 |
| 56 | 56 | 0.717 |
| 57 | 57 | 0.404 |
| 58 | 58 | 0.132 |
| 59 | 59 | 0.249 |
| 6 | 6 | 0.812 |
| 60 | 60 | 0.332 |
| 61 | 61 | 0.811 |
| 62 | 62 | 0.233 |
| 63 | 63 | 0.946 |
| 64 | 64 | 0.914 |
| 65 | 65 | 0.696 |
| 66 | 66 | 0.554 |
| 67 | 67 | 0.835 |
| 68 | 68 | 0.428 |
| 69 | 69 | 0.903 |
| 7 | 7 | 0.348 |
| 70 | 70 | 0.92 |
| 71 | 71 | 0.141 |
| 72 | 72 | 0.555 |
| 73 | 73 | 0.0963 |
| 74 | 74 | 0.55 |
| 75 | 75 | 0.968 |
| 76 | 76 | 0.339 |
| 77 | 77 | 0.373 |
| 78 | 78 | 0.0338 |
| 79 | 79 | 0.00471 |
| 8 | 8 | 0.994 |
| 80 | 80 | 0.667 |
| 81 | 81 | 0.351 |
| 82 | 82 | 0.892 |
| 83 | 83 | 0.143 |
| 84 | 84 | 0.702 |
| 85 | 85 | 0.696 |
| 86 | 86 | 0.789 |
| 87 | 87 | 0.744 |
| 88 | 88 | 0.586 |
| 89 | 89 | 0.301 |
| 9 | 9 | 0.387 |
| 90 | 90 | 0.185 |
| 91 | 91 | 0.666 |
| 92 | 92 | 0.845 |
| 93 | 93 | 0.57 |
| 94 | 94 | 0.432 |
| 95 | 95 | 0.948 |
| 96 | 96 | 0.884 |
| 97 | 97 | 0.718 |
| 98 | 98 | 0.0937 |
| 99 | 99 | 0.00177 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11083
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
