FF:10197-103E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005785 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005785 | |||
|accession_numbers=CAGE;DRX008648;DRR009520;DRZ000945;DRZ002330;DRZ012295;DRZ013680 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057116;DRR062875;DRZ007951 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011289 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr10:102505327..102505344,+!p1@PAX2!2.05!111.13!PAX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.94!86.49!TFAP2B;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.57!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.82!64.65!EHF;;chr10:102505493..102505546,+!p2@PAX2!1.81!62.90!PAX2;;chr2:114036488..114036504,-!p1@PAX8!1.78!59.41!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.77!57.83!POU3F3;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.26!MLXIPL;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.21!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.59!HOXB6;;chr6:152128810..152128827,+!p2@ESR1!1.72!51.54!ESR1;;chr1:209979467..209979494,-!p1@IRF6!1.62!45.78!IRF6;;chr12:52437488..52437507,+!p2@NR4A1!1.59!38.27!NR4A1;;chr2:177001290..177001315,+!p1@HOXD3!1.58!37.04!HOXD3;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.99!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.57!35.82!TCF21;;chr17:46692457..46692484,-!p2@HOXB8!1.57!35.82!HOXB8;;chr20:62680984..62680999,-!p1@SOX18!1.52!42.46!SOX18;;chr10:119302268..119302282,+!p4@EMX2!1.51!31.45!EMX2;;chr4:57524061..57524074,-!p17@HOPX!1.48!29.18!HOPX;;chr17:46688334..46688385,-!p1@HOXB7!1.45!38.61!HOXB7;;chrX:131547625..131547644,-!p4@MBNL3!1.45!27.43!MBNL3;;chr17:74137321..74137337,-!p1@FOXJ1!1.45!26.91!FOXJ1;;chr14:105935396..105935413,+!p4@MTA1!1.44!26.73!MTA1;;chr17:46675558..46675577,-!p2@HOXB6!1.44!26.38!HOXB6;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.34!MBNL3;;chr11:34645791..34645836,+!p3@EHF!1.41!24.81!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.81!HOXA3;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.42!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.40!24.29!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.40!23.94!KDM5D;;chr21:39870339..39870443,-!p1@ERG!1.39!23.76!ERG;;chr17:46667594..46667619,-!p1@HOXB3!1.39!23.41!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.38!69.19!TBX2;;chr1:201979743..201979762,+!p1@ELF3!1.35!21.49!ELF3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.35!21.32!HOXC5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.35!21.14!TFCP2L1;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.62!HOXB8;;chr10:8096631..8096660,+!p1@GATA3!1.30!22.89!GATA3;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.52!HAND2;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.97!HOPX;;chr2:68592406..68592424,+!p1@PLEK!1.28!18.00!PLEK;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.65!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.65!SOX17;;chr10:102505552..102505563,+!p5@PAX2!1.27!17.47!PAX2;;chr9:114287433..114287513,+!p1@ZNF483!1.26!44.38!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.65!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!1.25!16.95!HOXD8;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.73!TFAP2A;;chr6:152126790..152126828,+!p3@ESR1!1.23!15.90!ESR1;;chrX:66763856..66763896,+!p1@AR!1.22!22.54!AR;;chr17:46703212..46703238,-!p2@HOXB9!1.22!15.73!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.22!15.55!HOXA9;;chr10:119302352..119302362,+!p9@EMX2!1.22!15.55!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.55!SPI1;;chr17:46667628..46667642,-!p2@HOXB3!1.21!15.20!HOXB3;;chr6:152126830..152126847,+!p4@ESR1!1.20!14.85!ESR1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.50!SMARCE1;;chr2:176994919..176994931,+!p2@HOXD8!1.19!14.50!HOXD8;;chr8:102504651..102504683,+!p1@GRHL2!1.19!14.33!GRHL2;;chr1:151804244..151804310,-!p1@RORC!1.18!13.98!RORC;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.80!SOX7;;chr12:115122318..115122331,-!p2@TBX3!1.17!13.63!TBX3;;chr16:79634624..79634642,-!p1@MAF!1.16!53.29!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.16!17.65!TSHZ2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.16!13.45!PEG3;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.90!NR2F1;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.28!IRF8;;chr10:119302150..119302163,+!p8@EMX2!1.15!13.28!EMX2;;chr6:50789717..50789729,+!p4@TFAP2B!1.14!12.76!TFAP2B;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.76!ZSCAN1;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.15!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.13!12.41!EMX2;;chr11:32457075..32457095,-!p1@WT1!1.12!12.23!WT1;;chr17:36105042..36105060,-!p1@HNF1B!1.12!12.23!HNF1B;;chr17:46692624..46692659,-!p3@HOXB8!1.12!12.23!HOXB8;;chr7:44143925..44143970,+!p1@AEBP1!1.11!265.06!AEBP1;;chr6:126070769..126070801,+!p1@HEY2!1.11!13.63!HEY2;;chr4:26165074..26165110,+!p9@RBPJ!1.11!11.88!RBPJ;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.92!ZMAT1;;chr5:158526917..158526932,-!p1@EBF1!1.10!29.35!EBF1;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.27!ZEB2;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.71!HOXD1;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.71!MEOX2;;chr10:119302508..119302559,+!p5@EMX2!1.09!11.36!EMX2;;chr8:99956662..99956684,+!p1@OSR2!1.08!16.95!OSR2;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.13!ZFPM2;;chr10:64576105..64576133,-!p1@EGR2!1.07!22.19!EGR2;;chr10:119301928..119301955,+!p7@EMX2!1.07!10.83!EMX2;;chr17:80797886..80797906,-!p1@ZNF750!1.07!10.66!ZNF750;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.48!MEOX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.0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| |expression_enrichment_score=chr10:102505327..102505344,+!p1@PAX2!2.05!111.13!PAX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.94!86.49!TFAP2B;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.57!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.82!64.65!EHF;;chr10:102505493..102505546,+!p2@PAX2!1.81!62.90!PAX2;;chr2:114036488..114036504,-!p1@PAX8!1.78!59.41!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.77!57.83!POU3F3;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.26!MLXIPL;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.21!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.59!HOXB6;;chr6:152128810..152128827,+!p2@ESR1!1.72!51.54!ESR1;;chr1:209979467..209979494,-!p1@IRF6!1.62!45.78!IRF6;;chr12:52437488..52437507,+!p2@NR4A1!1.59!38.27!NR4A1;;chr2:177001290..177001315,+!p1@HOXD3!1.58!37.04!HOXD3;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.99!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.57!35.82!TCF21;;chr17:46692457..46692484,-!p2@HOXB8!1.57!35.82!HOXB8;;chr20:62680984..62680999,-!p1@SOX18!1.52!42.46!SOX18;;chr10:119302268..119302282,+!p4@EMX2!1.51!31.45!EMX2;;chr4:57524061..57524074,-!p17@HOPX!1.48!29.18!HOPX;;chr17:46688334..46688385,-!p1@HOXB7!1.45!38.61!HOXB7;;chrX:131547625..131547644,-!p4@MBNL3!1.45!27.43!MBNL3;;chr17:74137321..74137337,-!p1@FOXJ1!1.45!26.91!FOXJ1;;chr14:105935396..105935413,+!p4@MTA1!1.44!26.73!MTA1;;chr17:46675558..46675577,-!p2@HOXB6!1.44!26.38!HOXB6;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.34!MBNL3;;chr11:34645791..34645836,+!p3@EHF!1.41!24.81!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.81!HOXA3;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.42!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.40!24.29!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.40!23.94!KDM5D;;chr21:39870339..39870443,-!p1@ERG!1.39!23.76!ERG;;chr17:46667594..46667619,-!p1@HOXB3!1.39!23.41!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.38!69.19!TBX2;;chr1:201979743..201979762,+!p1@ELF3!1.35!21.49!ELF3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.35!21.32!HOXC5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.35!21.14!TFCP2L1;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.62!HOXB8;;chr10:8096631..8096660,+!p1@GATA3!1.30!22.89!GATA3;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.52!HAND2;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.97!HOPX;;chr2:68592406..68592424,+!p1@PLEK!1.28!18.00!PLEK;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.65!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.65!SOX17;;chr10:102505552..102505563,+!p5@PAX2!1.27!17.47!PAX2;;chr9:114287433..114287513,+!p1@ZNF483!1.26!44.38!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.65!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!1.25!16.95!HOXD8;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.73!TFAP2A;;chr6:152126790..152126828,+!p3@ESR1!1.23!15.90!ESR1;;chrX:66763856..66763896,+!p1@AR!1.22!22.54!AR;;chr17:46703212..46703238,-!p2@HOXB9!1.22!15.73!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.22!15.55!HOXA9;;chr10:119302352..119302362,+!p9@EMX2!1.22!15.55!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.55!SPI1;;chr17:46667628..46667642,-!p2@HOXB3!1.21!15.20!HOXB3;;chr6:152126830..152126847,+!p4@ESR1!1.20!14.85!ESR1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.50!SMARCE1;;chr2:176994919..176994931,+!p2@HOXD8!1.19!14.50!HOXD8;;chr8:102504651..102504683,+!p1@GRHL2!1.19!14.33!GRHL2;;chr1:151804244..151804310,-!p1@RORC!1.18!13.98!RORC;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.80!SOX7;;chr12:115122318..115122331,-!p2@TBX3!1.17!13.63!TBX3;;chr16:79634624..79634642,-!p1@MAF!1.16!53.29!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.16!17.65!TSHZ2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.16!13.45!PEG3;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.90!NR2F1;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.28!IRF8;;chr10:119302150..119302163,+!p8@EMX2!1.15!13.28!EMX2;;chr6:50789717..50789729,+!p4@TFAP2B!1.14!12.76!TFAP2B;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.76!ZSCAN1;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.15!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.13!12.41!EMX2;;chr11:32457075..32457095,-!p1@WT1!1.12!12.23!WT1;;chr17:36105042..36105060,-!p1@HNF1B!1.12!12.23!HNF1B;;chr17:46692624..46692659,-!p3@HOXB8!1.12!12.23!HOXB8;;chr7:44143925..44143970,+!p1@AEBP1!1.11!265.06!AEBP1;;chr6:126070769..126070801,+!p1@HEY2!1.11!13.63!HEY2;;chr4:26165074..26165110,+!p9@RBPJ!1.11!11.88!RBPJ;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.92!ZMAT1;;chr5:158526917..158526932,-!p1@EBF1!1.10!29.35!EBF1;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.27!ZEB2;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.71!HOXD1;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.71!MEOX2;;chr10:119302508..119302559,+!p5@EMX2!1.09!11.36!EMX2;;chr8:99956662..99956684,+!p1@OSR2!1.08!16.95!OSR2;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.13!ZFPM2;;chr10:64576105..64576133,-!p1@EGR2!1.07!22.19!EGR2;;chr10:119301928..119301955,+!p7@EMX2!1.07!10.83!EMX2;;chr17:80797886..80797906,-!p1@ZNF750!1.07!10.66!ZNF750;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.48!MEOX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.39!BHLHE41;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!23.76!ZBTB20;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.44!DACH1;;chr4:57522674..57522699,-!p5@HOPX!1.05!10.31!HOPX;;chr19:58545369..58545404,+!p2@ZSCAN1!1.05!10.31!ZSCAN1;;chr19:54058073..54058088,+!p1@ZNF331!1.05!10.13!ZNF331;;chr1:61547894..61547968,+!p2@NFIA!1.04!29.35!NFIA;;chr17:59477275..59477286,+!p3@TBX2!1.04!13.45!TBX2;;chr18:53068911..53068935,-!p4@TCF4!1.04!11.36!TCF4;;chr6:168294352..168294371,+!p6@MLLT4!1.04!9.96!MLLT4;;chr17:1959369..1959388,+!p2@HIC1!1.03!25.86!HIC1;;chr4:57522598..57522664,-!p3@HOPX!1.03!9.78!HOPX;;chr10:119302182..119302196,+!p6@EMX2!1.03!9.78!EMX2;;chr22:38380543..38380569,-!p1@SOX10!1.03!9.61!SOX10;;chr2:177016336..177016350,+!p1@HOXD4!1.02!9.44!HOXD4;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.11!NR2F1;;chr16:79634595..79634620,-!p2@MAF!1.01!17.12!MAF;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.66!PRRX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.01!9.26!PKNOX2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.00!9.09!POU3F3;;chr16:67198683..67198698,+!p2@HSF4!1.00!9.09!HSF4;;chr10:102505655..102505689,+!p10@PAX2!1.00!8.91!PAX2;;chr11:113930401..113930422,+!p3@ZBTB16!1.00!8.91!ZBTB16;;chr7:27183291..27183324,-!p1@HOXA5!1.00!8.91!HOXA5;;chr7:27224842..27224872,-!p1@HOXA11!1.00!8.91!HOXA11;;chr20:43029862..43029900,+!p1@HNF4A!1.00!8.91!HNF4A;;chr15:96873984..96873999,+!p3@NR2F2!0.99!65.70!NR2F2;;chr10:8095593..8095625,+!p3@GATA3!0.99!10.48!GATA3;;chr14:24553835..24553850,-!p1@NRL!0.99!8.74!NRL;;chr16:67198633..67198671,+!p1@HSF4!0.99!8.74!HSF4;;chr3:189507432..189507459,+!p1@TP63!0.99!8.74!TP63;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.15!ZBTB16;;chr6:50786571..50786590,+!p2@TFAP2B!0.98!8.56!TFAP2B;;chr14:105935426..105935440,+!p9@MTA1!0.97!8.39!MTA1;;chr17:46692603..46692621,-!p6@HOXB8!0.97!8.39!HOXB8;;chr5:88178983..88179012,-!p1@MEF2C!0.96!64.12!MEF2C;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.96!17.82!ZNF395;;chr16:79633894..79633954,-!p3@MAF!0.96!15.90!MAF;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.33!TBX2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.96!8.21!ZBTB7C;;chr13:45048432..45048452,-!p29@TSC22D1!0.96!8.21!TSC22D1;;chrX:25034067..25034088,-!p1@ARX!0.96!8.21!ARX;;chrX:147582254..147582320,+!p1@AFF2!0.96!8.21!AFF2;;chr22:31739411..31739446,-!p5@PATZ1!0.96!8.04!PATZ1;;chr3:128212033..128212051,-!p1@GATA2!0.96!8.04!GATA2;;chr14:105935576..105935594,+!p11@MTA1!0.96!8.04!MTA1;;chr11:34642656..34642667,+!p2@EHF!0.95!7.86!EHF;;chr20:50159198..50159299,-!p1@NFATC2!0.94!11.36!NFATC2;;chr5:71803177..71803255,-!p1@ZNF366!0.94!7.69!ZNF366;;chr7:27224795..27224840,-!p2@HOXA11!0.94!7.69!HOXA11;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.15!AEBP1;;chr10:102505312..102505320,+!p6@PAX2!0.93!7.51!PAX2;;chr10:102505954..102505973,+!p3@PAX2!0.93!7.51!PAX2;;chr22:41763452..41763466,+!p2@TEF!0.93!7.51!TEF;;chr2:27371879..27371907,+!p1@TCF23!0.93!7.51!TCF23;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.09!TFAP2A;;chr17:53342311..53342400,+!p1@HLF!0.92!8.39!HLF;;chr17:46671108..46671147,-!p1@HOXB5!0.92!7.34!HOXB5;;chr7:27183263..27183284,-!p2@HOXA5!0.92!7.34!HOXA5;;chr10:119302645..119302712,+!p3@EMX2!0.92!7.34!EMX2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.43!ID4;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.78!PRRX1;;chr16:79634464..79634493,-!p5@MAF!0.91!7.16!MAF;;chr15:96869255..96869291,+!p6@NR2F2!0.90!12.93!NR2F2;;chr8:102504979..102505010,+!p2@GRHL2!0.90!6.99!GRHL2;;chr10:102505901..102505907,+!p13@PAX2!0.90!6.99!PAX2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.66!ZNF385A;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.61!TSC22D3;;chr1:201979703..201979721,+!p2@ELF3!0.89!6.81!ELF3;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.87!OSR1;;chr16:31141328..31141350,+!p2@KAT8!0.88!6.64!KAT8;;chr3:21792585..21792625,-!p2@ZNF385D!0.87!7.16!ZNF385D;;chr16:31141379..31141389,+!p5@KAT8!0.87!6.46!KAT8;;chr17:46703687..46703740,-!p1@HOXB9!0.87!6.46!HOXB9;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.46!ZFY;;chr6:10413188..10413249,-!p7@TFAP2A!0.87!6.46!TFAP2A;;chr5:92919068..92919082,+!p5@NR2F1!0.86!7.51!NR2F1;;chr17:46675420..46675465,-!p3@HOXB6!0.86!7.34!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.16!BNC1;;chr11:101000537..101000553,-!p1@PGR!0.86!6.29!PGR;;chr1:170633058..170633084,+!p5@PRRX1!0.86!6.29!PRRX1;;chr1:2461692..2461710,-!p1@HES5!0.86!6.29!HES5;;chr7:73038867..73038878,-!p2@MLXIPL!0.86!6.29!MLXIPL;;chr9:104161123..104161205,+!p1@ZNF189!0.85!45.25!ZNF189;;chr17:7492684..7492778,-!p2@SOX15!0.85!13.28!SOX15;;chr8:93107451..93107468,-!p2@RUNX1T1!0.85!6.12!RUNX1T1;;chr19:16435625..16435682,+!p1@KLF2!0.84!202.16!KLF2;;chr1:214161272..214161322,+!p1@PROX1!0.84!8.56!PROX1;;chr7:44143997..44144008,+!p3@AEBP1!0.84!7.69!AEBP1;;chr3:169381420..169381535,-!p1@MECOM!0.84!6.99!MECOM;;chrY:21906761..21906810,-!p2@KDM5D!0.84!5.94!KDM5D;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.05!GATA6;;chr15:42749722..42749739,-!p2@ZFP106!0.83!10.83!ZFP106;;chr18:19749386..19749404,+!p2@GATA6!0.83!8.39!GATA6;;chr17:46688310..46688323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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0007297,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10197-103E8 | |id=FF:10197-103E8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0011289 | |is_a=EFO:0002091;;FF:0000210;;FF:0011289 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12847 | |||
|library_id_phase_based=2:CNhs12847 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10197 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10197 | |||
|name=epididymis, adult | |name=epididymis, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 63: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12847,LSID973,release012,COMPLETED | |profile_hcage=CNhs12847,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0650789357179,0,0,0.31140628842589,0,0.151088258339504,0.31140628842589,0.703168745580405,0.235215248063195,0,0,0,0.0699368280688007,0,0,0,0,0,0.183036259945092,0,0.0699368280688007,0,0.0768465118236168,0,0.219450409630559,0,0.115084761086022,0,-0.0280210681992568,0,0,0.139728016266437,0,0,0,0,0,0,0,0,0,0,0,0.0699368280688007,0.449847450261722,0.0699368280688007,0,0,0,0,0,0,0,0.155948675691088,0,0.0699368280688007,0,0.0699368280688007,0,0.106589424231903,0,0.249964034839395,0,0,0.214062661212793,0.230169522172044,0,0,0,0,0,0,0,0.1301578714358,0,0,0,0.0105596707036902,0.0699368280688007,0,0,0.0699368280688007,0.060045146435819,0.1000473497523,0,0,0.0685010072894795,0,0.0699368280688007,0.142727132279489,0.369181914678403,0,0.0882342389539511,0.202715685749407,0.213434076261579,0,0.0699368280688007,0.115084761086022,0.31140628842589,-0.0280985231689057,0.240130444934535,0.0349684140344003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0312946582045611,0.0699368280688007,0,0,0.50369696920014,0.551045595694164,0.0699368280688007,0,0,0.1301578714358,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234105-10 | |rna_catalog_number=R1234105-10 | ||
| Line 55: | Line 78: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+10 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |rnaseq_library_id=RDhi10059 | ||
|sample_age=24 | |||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 73: | Line 98: | ||
|sample_id=10197 | |sample_id=10197 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
| Line 79: | Line 104: | ||
|top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638 | |top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10197-103E8;search_select_hide=table117:FF:10197-103E8 | |||
}} | }} | ||
Latest revision as of 18:15, 3 June 2020
| Name: | epididymis, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12847 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12847
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12847
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0578 |
| 10 | 10 | 0.0491 |
| 100 | 100 | 0.222 |
| 101 | 101 | 0.849 |
| 102 | 102 | 0.376 |
| 103 | 103 | 0.249 |
| 104 | 104 | 0.258 |
| 105 | 105 | 0.439 |
| 106 | 106 | 0.911 |
| 107 | 107 | 0.192 |
| 108 | 108 | 0.847 |
| 109 | 109 | 0.0476 |
| 11 | 11 | 0.138 |
| 110 | 110 | 0.204 |
| 111 | 111 | 0.0475 |
| 112 | 112 | 0.382 |
| 113 | 113 | 0.844 |
| 114 | 114 | 0.0739 |
| 115 | 115 | 0.435 |
| 116 | 116 | 0.525 |
| 117 | 117 | 0.0355 |
| 118 | 118 | 0.159 |
| 119 | 119 | 0.754 |
| 12 | 12 | 0.706 |
| 120 | 120 | 0.274 |
| 121 | 121 | 0.907 |
| 122 | 122 | 1 |
| 123 | 123 | 0.0224 |
| 124 | 124 | 0.428 |
| 125 | 125 | 0.14 |
| 126 | 126 | 0.367 |
| 127 | 127 | 0.21 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.914 |
| 13 | 13 | 0.159 |
| 130 | 130 | 0.436 |
| 131 | 131 | 0.943 |
| 132 | 132 | 0.114 |
| 133 | 133 | 0.211 |
| 134 | 134 | 0.485 |
| 135 | 135 | 0.13 |
| 136 | 136 | 0.69 |
| 137 | 137 | 0.568 |
| 138 | 138 | 0.814 |
| 139 | 139 | 0.539 |
| 14 | 14 | 0.861 |
| 140 | 140 | 0.988 |
| 141 | 141 | 0.801 |
| 142 | 142 | 0.873 |
| 143 | 143 | 0.00126 |
| 144 | 144 | 0.484 |
| 145 | 145 | 0.282 |
| 146 | 146 | 0.787 |
| 147 | 147 | 0.475 |
| 148 | 148 | 0.311 |
| 149 | 149 | 0.222 |
| 15 | 15 | 0.0898 |
| 150 | 150 | 0.369 |
| 151 | 151 | 0.793 |
| 152 | 152 | 0.202 |
| 153 | 153 | 0.495 |
| 154 | 154 | 0.247 |
| 155 | 155 | 0.914 |
| 156 | 156 | 0.978 |
| 157 | 157 | 0.856 |
| 158 | 158 | 0.313 |
| 159 | 159 | 0.292 |
| 16 | 16 | 0.82 |
| 160 | 160 | 0.301 |
| 161 | 161 | 0.914 |
| 162 | 162 | 0.787 |
| 163 | 163 | 0.193 |
| 164 | 164 | 0.365 |
| 165 | 165 | 0.174 |
| 166 | 166 | 0.188 |
| 167 | 167 | 0.0251 |
| 168 | 168 | 0.455 |
| 169 | 169 | 0.24 |
| 17 | 17 | 0.464 |
| 18 | 18 | 0.0245 |
| 19 | 19 | 0.284 |
| 2 | 2 | 0.0131 |
| 20 | 20 | 0.0367 |
| 21 | 21 | 0.41 |
| 22 | 22 | 0.72 |
| 23 | 23 | 0.724 |
| 24 | 24 | 0.558 |
| 25 | 25 | 0.402 |
| 26 | 26 | 0.063 |
| 27 | 27 | 0.677 |
| 28 | 28 | 0.603 |
| 29 | 29 | 0.0185 |
| 3 | 3 | 0.217 |
| 30 | 30 | 0.0356 |
| 31 | 31 | 0.957 |
| 32 | 32 | 0.376 |
| 33 | 33 | 0.106 |
| 34 | 34 | 0.29 |
| 35 | 35 | 0.384 |
| 36 | 36 | 0.00716 |
| 37 | 37 | 0.279 |
| 38 | 38 | 0.539 |
| 39 | 39 | 0.295 |
| 4 | 4 | 0.255 |
| 40 | 40 | 0.0858 |
| 41 | 41 | 0.0376 |
| 42 | 42 | 0.122 |
| 43 | 43 | 0.164 |
| 44 | 44 | 0.459 |
| 45 | 45 | 0.178 |
| 46 | 46 | 0.183 |
| 47 | 47 | 0.252 |
| 48 | 48 | 0.378 |
| 49 | 49 | 0.0674 |
| 5 | 5 | 0.205 |
| 50 | 50 | 0.659 |
| 51 | 51 | 0.473 |
| 52 | 52 | 0.142 |
| 53 | 53 | 0.805 |
| 54 | 54 | 0.789 |
| 55 | 55 | 0.912 |
| 56 | 56 | 0.834 |
| 57 | 57 | 0.208 |
| 58 | 58 | 0.653 |
| 59 | 59 | 0.815 |
| 6 | 6 | 0.772 |
| 60 | 60 | 0.607 |
| 61 | 61 | 0.823 |
| 62 | 62 | 0.404 |
| 63 | 63 | 0.754 |
| 64 | 64 | 0.347 |
| 65 | 65 | 0.609 |
| 66 | 66 | 0.0103 |
| 67 | 67 | 0.511 |
| 68 | 68 | 0.902 |
| 69 | 69 | 0.997 |
| 7 | 7 | 0.377 |
| 70 | 70 | 0.133 |
| 71 | 71 | 0.0662 |
| 72 | 72 | 0.86 |
| 73 | 73 | 0.334 |
| 74 | 74 | 0.616 |
| 75 | 75 | 0.0109 |
| 76 | 76 | 0.0257 |
| 77 | 77 | 0.117 |
| 78 | 78 | 0.0473 |
| 79 | 79 | 0.845 |
| 8 | 8 | 0.369 |
| 80 | 80 | 0.753 |
| 81 | 81 | 0.954 |
| 82 | 82 | 0.55 |
| 83 | 83 | 0.769 |
| 84 | 84 | 0.98 |
| 85 | 85 | 0.734 |
| 86 | 86 | 0.834 |
| 87 | 87 | 0.504 |
| 88 | 88 | 0.902 |
| 89 | 89 | 0.567 |
| 9 | 9 | 0.579 |
| 90 | 90 | 0.0291 |
| 91 | 91 | 0.619 |
| 92 | 92 | 0.636 |
| 93 | 93 | 0.216 |
| 94 | 94 | 0.0757 |
| 95 | 95 | 0.0315 |
| 96 | 96 | 0.751 |
| 97 | 97 | 0.846 |
| 98 | 98 | 0.594 |
| 99 | 99 | 0.24 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12847
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0011289 epididymis- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001301 (epididymis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011289 (epididymis- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)
