FF:10197-103E8: Difference between revisions

Latest revision as of 18:15, 3 June 2020

Name:	epididymis, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12847
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	24
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234105-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005785

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12847		CAGE		DRX008648		DRR009520

Accession ID Hg19

Library id		BAM		CTSS
CNhs12847		DRZ000945		DRZ002330

Accession ID Hg38

Library id		BAM		CTSS
CNhs12847		DRZ012295		DRZ013680

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005785

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10059		RNA-Seq		DRX057116		DRR062875

Accession ID Hg19

Library id		BAM		CTSS
RDhi10059		DRZ007951

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0621
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0191
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.254
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.743
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0699
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0429
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.0699
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.238
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0699
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.13
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0699
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.347
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0713
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.165
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0306
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.38
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.332
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.0699
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.699
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.0699
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.0699
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0649
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.52
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.13
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.23
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0699
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.0699
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.346
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0699
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.273
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.24
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.569
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0699
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0699
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0699
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0444
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0699
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0699
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0699
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.436
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0699
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.171
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.23
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0699
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.23
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.311
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.347
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0699
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0699
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.617
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.13
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	1.104
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.363
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.131
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.27
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.183
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0699
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.0699
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0699
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.0699
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.13
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12847

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00273
MA0003.1	MA0003.1	0.0219
MA0004.1	MA0004.1	0.0122
MA0006.1	MA0006.1	0.161
MA0007.1	MA0007.1	0.0218
MA0009.1	MA0009.1	0.141
MA0014.1	MA0014.1	0.817
MA0017.1	MA0017.1	0.464
MA0018.2	MA0018.2	0.44
MA0019.1	MA0019.1	0.00673
MA0024.1	MA0024.1	0.0176
MA0025.1	MA0025.1	0.212
MA0027.1	MA0027.1	0.793
MA0028.1	MA0028.1	6.23706e-4
MA0029.1	MA0029.1	0.509
MA0030.1	MA0030.1	0.193
MA0031.1	MA0031.1	0.537
MA0035.2	MA0035.2	0.11
MA0038.1	MA0038.1	0.613
MA0039.2	MA0039.2	0.782
MA0040.1	MA0040.1	0.449
MA0041.1	MA0041.1	0.383
MA0042.1	MA0042.1	0.82
MA0043.1	MA0043.1	0.0553
MA0046.1	MA0046.1	3.5808e-15
MA0047.2	MA0047.2	0.705
MA0048.1	MA0048.1	0.0717
MA0050.1	MA0050.1	0.927
MA0051.1	MA0051.1	0.737
MA0052.1	MA0052.1	7.04171e-5
MA0055.1	MA0055.1	0.00229
MA0057.1	MA0057.1	0.735
MA0058.1	MA0058.1	0.0122
MA0059.1	MA0059.1	0.00114
MA0060.1	MA0060.1	0.0208
MA0061.1	MA0061.1	1.34052e-8
MA0062.2	MA0062.2	5.55334e-6
MA0065.2	MA0065.2	0.662
MA0066.1	MA0066.1	0.486
MA0067.1	MA0067.1	0.00956
MA0068.1	MA0068.1	0.0027
MA0069.1	MA0069.1	0.84
MA0070.1	MA0070.1	0.788
MA0071.1	MA0071.1	0.271
MA0072.1	MA0072.1	0.0763
MA0073.1	MA0073.1	0.618
MA0074.1	MA0074.1	0.25
MA0076.1	MA0076.1	4.05956e-4
MA0077.1	MA0077.1	0.796
MA0078.1	MA0078.1	0.0903
MA0079.2	MA0079.2	0.176
MA0080.2	MA0080.2	7.3745e-4
MA0081.1	MA0081.1	0.0051
MA0083.1	MA0083.1	0.00175
MA0084.1	MA0084.1	0.85
MA0087.1	MA0087.1	0.141
MA0088.1	MA0088.1	0.0126
MA0090.1	MA0090.1	0.317
MA0091.1	MA0091.1	0.673
MA0092.1	MA0092.1	0.902
MA0093.1	MA0093.1	0.0218
MA0099.2	MA0099.2	9.60049e-24
MA0100.1	MA0100.1	0.101
MA0101.1	MA0101.1	1.12122e-8
MA0102.2	MA0102.2	0.1
MA0103.1	MA0103.1	0.0961
MA0104.2	MA0104.2	4.37043e-5
MA0105.1	MA0105.1	1.41062e-9
MA0106.1	MA0106.1	0.0985
MA0107.1	MA0107.1	3.32659e-9
MA0108.2	MA0108.2	3.66623e-10
MA0111.1	MA0111.1	0.449
MA0112.2	MA0112.2	0.435
MA0113.1	MA0113.1	0.0054
MA0114.1	MA0114.1	0.711
MA0115.1	MA0115.1	0.676
MA0116.1	MA0116.1	5.90565e-4
MA0117.1	MA0117.1	0.0988
MA0119.1	MA0119.1	0.862
MA0122.1	MA0122.1	0.244
MA0124.1	MA0124.1	0.84
MA0125.1	MA0125.1	0.536
MA0131.1	MA0131.1	0.31
MA0135.1	MA0135.1	0.48
MA0136.1	MA0136.1	5.23923e-5
MA0137.2	MA0137.2	0.303
MA0138.2	MA0138.2	0.929
MA0139.1	MA0139.1	0.388
MA0140.1	MA0140.1	0.00982
MA0141.1	MA0141.1	0.358
MA0142.1	MA0142.1	0.107
MA0143.1	MA0143.1	0.667
MA0144.1	MA0144.1	0.429
MA0145.1	MA0145.1	0.0135
MA0146.1	MA0146.1	0.911
MA0147.1	MA0147.1	2.20186e-5
MA0148.1	MA0148.1	0.632
MA0149.1	MA0149.1	0.0219
MA0150.1	MA0150.1	7.40549e-6
MA0152.1	MA0152.1	0.423
MA0153.1	MA0153.1	1.4319e-14
MA0154.1	MA0154.1	0.0459
MA0155.1	MA0155.1	0.166
MA0156.1	MA0156.1	2.88484e-6
MA0157.1	MA0157.1	0.588
MA0159.1	MA0159.1	0.701
MA0160.1	MA0160.1	0.6
MA0162.1	MA0162.1	0.885
MA0163.1	MA0163.1	0.00137
MA0164.1	MA0164.1	0.357
MA0258.1	MA0258.1	0.346
MA0259.1	MA0259.1	0.0132

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12847

Novel motif	Logo	P-value
1	1	0.0578
10	10	0.0491
100	100	0.222
101	101	0.849
102	102	0.376
103	103	0.249
104	104	0.258
105	105	0.439
106	106	0.911
107	107	0.192
108	108	0.847
109	109	0.0476
11	11	0.138
110	110	0.204
111	111	0.0475
112	112	0.382
113	113	0.844
114	114	0.0739
115	115	0.435
116	116	0.525
117	117	0.0355
118	118	0.159
119	119	0.754
12	12	0.706
120	120	0.274
121	121	0.907
122	122	1
123	123	0.0224
124	124	0.428
125	125	0.14
126	126	0.367
127	127	0.21
128	128	0.45
129	129	0.914
13	13	0.159
130	130	0.436
131	131	0.943
132	132	0.114
133	133	0.211
134	134	0.485
135	135	0.13
136	136	0.69
137	137	0.568
138	138	0.814
139	139	0.539
14	14	0.861
140	140	0.988
141	141	0.801
142	142	0.873
143	143	0.00126
144	144	0.484
145	145	0.282
146	146	0.787
147	147	0.475
148	148	0.311
149	149	0.222
15	15	0.0898
150	150	0.369
151	151	0.793
152	152	0.202
153	153	0.495
154	154	0.247
155	155	0.914
156	156	0.978
157	157	0.856
158	158	0.313
159	159	0.292
16	16	0.82
160	160	0.301
161	161	0.914
162	162	0.787
163	163	0.193
164	164	0.365
165	165	0.174
166	166	0.188
167	167	0.0251
168	168	0.455
169	169	0.24
17	17	0.464
18	18	0.0245
19	19	0.284
2	2	0.0131
20	20	0.0367
21	21	0.41
22	22	0.72
23	23	0.724
24	24	0.558
25	25	0.402
26	26	0.063
27	27	0.677
28	28	0.603
29	29	0.0185
3	3	0.217
30	30	0.0356
31	31	0.957
32	32	0.376
33	33	0.106
34	34	0.29
35	35	0.384
36	36	0.00716
37	37	0.279
38	38	0.539
39	39	0.295
4	4	0.255
40	40	0.0858
41	41	0.0376
42	42	0.122
43	43	0.164
44	44	0.459
45	45	0.178
46	46	0.183
47	47	0.252
48	48	0.378
49	49	0.0674
5	5	0.205
50	50	0.659
51	51	0.473
52	52	0.142
53	53	0.805
54	54	0.789
55	55	0.912
56	56	0.834
57	57	0.208
58	58	0.653
59	59	0.815
6	6	0.772
60	60	0.607
61	61	0.823
62	62	0.404
63	63	0.754
64	64	0.347
65	65	0.609
66	66	0.0103
67	67	0.511
68	68	0.902
69	69	0.997
7	7	0.377
70	70	0.133
71	71	0.0662
72	72	0.86
73	73	0.334
74	74	0.616
75	75	0.0109
76	76	0.0257
77	77	0.117
78	78	0.0473
79	79	0.845
8	8	0.369
80	80	0.753
81	81	0.954
82	82	0.55
83	83	0.769
84	84	0.98
85	85	0.734
86	86	0.834
87	87	0.504
88	88	0.902
89	89	0.567
9	9	0.579
90	90	0.0291
91	91	0.619
92	92	0.636
93	93	0.216
94	94	0.0757
95	95	0.0315
96	96	0.751
97	97	0.846
98	98	0.594
99	99	0.24

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12847

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0011289 epididymis- adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001301 (epididymis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011289 (epididymis- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005785
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005785
+|accession_numbers=CAGE;DRX008648;DRR009520;DRZ000945;DRZ002330;DRZ012295;DRZ013680
+|accession_numbers_RNASeq=RNA-Seq;DRX057116;DRR062875;DRZ007951
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:102505327..102505344,+!p1@PAX2!2.05!111.13!PAX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.94!86.49!TFAP2B;;chr10:119302232..119302265,+!p1@EMX2!1.83!66.57!EMX2;;chr11:34642612..34642646,+!p1@EHF!1.82!64.65!EHF;;chr10:102505493..102505546,+!p2@PAX2!1.81!62.90!PAX2;;chr2:114036488..114036504,-!p1@PAX8!1.78!59.41!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.77!57.83!POU3F3;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.26!MLXIPL;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.21!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.73!52.59!HOXB6;;chr6:152128810..152128827,+!p2@ESR1!1.72!51.54!ESR1;;chr1:209979467..209979494,-!p1@IRF6!1.62!45.78!IRF6;;chr12:52437488..52437507,+!p2@NR4A1!1.59!38.27!NR4A1;;chr2:177001290..177001315,+!p1@HOXD3!1.58!37.04!HOXD3;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.99!HEYL;;chr6:134210243..134210257,+!p1@TCF21!1.57!35.82!TCF21;;chr17:46692457..46692484,-!p2@HOXB8!1.57!35.82!HOXB8;;chr20:62680984..62680999,-!p1@SOX18!1.52!42.46!SOX18;;chr10:119302268..119302282,+!p4@EMX2!1.51!31.45!EMX2;;chr4:57524061..57524074,-!p17@HOPX!1.48!29.18!HOPX;;chr17:46688334..46688385,-!p1@HOXB7!1.45!38.61!HOXB7;;chrX:131547625..131547644,-!p4@MBNL3!1.45!27.43!MBNL3;;chr17:74137321..74137337,-!p1@FOXJ1!1.45!26.91!FOXJ1;;chr14:105935396..105935413,+!p4@MTA1!1.44!26.73!MTA1;;chr17:46675558..46675577,-!p2@HOXB6!1.44!26.38!HOXB6;;chrX:131547596..131547609,-!p10@MBNL3!1.42!25.34!MBNL3;;chr11:34645791..34645836,+!p3@EHF!1.41!24.81!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.41!24.81!HOXA3;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.42!ZBTB16;;chr4:57547454..57547469,-!p1@HOPX!1.40!24.29!HOPX;;chrY:21906594..21906622,-!p1@KDM5D!1.40!23.94!KDM5D;;chr21:39870339..39870443,-!p1@ERG!1.39!23.76!ERG;;chr17:46667594..46667619,-!p1@HOXB3!1.39!23.41!HOXB3;;chr17:59477233..59477263,+!p1@TBX2!1.38!69.19!TBX2;;chr1:201979743..201979762,+!p1@ELF3!1.35!21.49!ELF3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.35!21.32!HOXC5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.35!21.14!TFCP2L1;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.62!HOXB8;;chr10:8096631..8096660,+!p1@GATA3!1.30!22.89!GATA3;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.52!HAND2;;chr4:57522166..57522260,-!p2@HOPX!1.28!20.97!HOPX;;chr2:68592406..68592424,+!p1@PLEK!1.28!18.00!PLEK;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.65!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.65!SOX17;;chr10:102505552..102505563,+!p5@PAX2!1.27!17.47!PAX2;;chr9:114287433..114287513,+!p1@ZNF483!1.26!44.38!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.65!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!1.25!16.95!HOXD8;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.73!TFAP2A;;chr6:152126790..152126828,+!p3@ESR1!1.23!15.90!ESR1;;chrX:66763856..66763896,+!p1@AR!1.22!22.54!AR;;chr17:46703212..46703238,-!p2@HOXB9!1.22!15.73!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.22!15.55!HOXA9;;chr10:119302352..119302362,+!p9@EMX2!1.22!15.55!EMX2;;chr11:47400078..47400106,-!p1@SPI1!1.22!15.55!SPI1;;chr17:46667628..46667642,-!p2@HOXB3!1.21!15.20!HOXB3;;chr6:152126830..152126847,+!p4@ESR1!1.20!14.85!ESR1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.50!SMARCE1;;chr2:176994919..176994931,+!p2@HOXD8!1.19!14.50!HOXD8;;chr8:102504651..102504683,+!p1@GRHL2!1.19!14.33!GRHL2;;chr1:151804244..151804310,-!p1@RORC!1.18!13.98!RORC;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.80!SOX7;;chr12:115122318..115122331,-!p2@TBX3!1.17!13.63!TBX3;;chr16:79634624..79634642,-!p1@MAF!1.16!53.29!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.16!17.65!TSHZ2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.16!13.45!PEG3;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.90!NR2F1;;chr16:85932760..85932775,+!p1@IRF8!1.15!13.28!IRF8;;chr10:119302150..119302163,+!p8@EMX2!1.15!13.28!EMX2;;chr6:50789717..50789729,+!p4@TFAP2B!1.14!12.76!TFAP2B;;chr19:58545454..58545498,+!p1@ZSCAN1!1.14!12.76!ZSCAN1;;chr1:170632285..170632309,+!p1@PRRX1!1.13!14.15!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.13!12.41!EMX2;;chr11:32457075..32457095,-!p1@WT1!1.12!12.23!WT1;;chr17:36105042..36105060,-!p1@HNF1B!1.12!12.23!HNF1B;;chr17:46692624..46692659,-!p3@HOXB8!1.12!12.23!HOXB8;;chr7:44143925..44143970,+!p1@AEBP1!1.11!265.06!AEBP1;;chr6:126070769..126070801,+!p1@HEY2!1.11!13.63!HEY2;;chr4:26165074..26165110,+!p9@RBPJ!1.11!11.88!RBPJ;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.92!ZMAT1;;chr5:158526917..158526932,-!p1@EBF1!1.10!29.35!EBF1;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.27!ZEB2;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.71!HOXD1;;chr7:15726296..15726315,-!p1@MEOX2!1.10!11.71!MEOX2;;chr10:119302508..119302559,+!p5@EMX2!1.09!11.36!EMX2;;chr8:99956662..99956684,+!p1@OSR2!1.08!16.95!OSR2;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.13!ZFPM2;;chr10:64576105..64576133,-!p1@EGR2!1.07!22.19!EGR2;;chr10:119301928..119301955,+!p7@EMX2!1.07!10.83!EMX2;;chr17:80797886..80797906,-!p1@ZNF750!1.07!10.66!ZNF750;;chr7:15726243..15726293,-!p2@MEOX2!1.06!10.48!MEOX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006947
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0007297,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/epididymis%252c%2520adult.CNhs12847.10197-103E8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10197-103E8
 |is_a=EFO:0002091;;FF:0000210;;FF:0011289
 |is_obsolete=
+|library_id=CNhs12847
+|library_id_phase_based=2:CNhs12847
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10197
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10197
 |name=epididymis, adult
 |namespace=FANTOM5
@@ Line 46: / Line 63: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12847,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=103
@@ Line 59: / Line 78: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=103E8
+|rna_tube_id=1.03E+10
 |rna_weight_ug=10
-|sample_age=M
+|rnaseq_library_id=RDhi10059
+|sample_age=24
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 77: / Line 98: @@
 |sample_id=10197
 |sample_note=
-|sample_sex=24
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 83: / Line 104: @@
 |top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10197-103E8;search_select_hide=table117:FF:10197-103E8
 }}

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FF:10197-103E8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0