FF:11382-118B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005947 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005947 | |||
|accession_numbers=CAGE;DRX008178;DRR009050;DRZ000475;DRZ001860;DRZ011825;DRZ013210 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037159;DRR041525;DRZ007167 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:157189180..157189290,-!p1@NR4A2!2.16!713.64!NR4A2;;chr1:25256756..25256774,-!p1@RUNX3!2.09!222.67!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.99!95.81!IKZF1;;chr9:102584262..102584276,+!p1@NR4A3!1.98!203.34!NR4A3;;chr19:54058073..54058088,+!p1@ZNF331!1.97!91.90!ZNF331;;chr5:133451294..133451310,+!p2@TCF7!1.95!88.00!TCF7;;chr19:45971246..45971265,+!p1@FOSB!1.90!1352.24!FOSB;;chr19:54041669..54041697,+!p2@ZNF331!1.89!76.69!ZNF331;;chr3:63953435..63953499,+!p1@ATXN7!1.89!76.28!ATXN7;;chr14:75745523..75745537,+!p1@FOS!1.88!8275.46!FOS;;chrX:106960285..106960299,-!p1@TSC22D3!1.87!1849.80!TSC22D3;;chr5:133450365..133450444,+!p1@TCF7!1.85!300.59!TCF7;;chr15:60884706..60884743,-!p1@RORA!1.81!311.69!RORA;;chr20:50159198..50159299,-!p1@NFATC2!1.81!90.46!NFATC2;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.74!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.78!70.73!GATA3;;chr19:12902289..12902307,+!p1@JUNB!1.76!12022.55!JUNB;;chr3:39195075..39195088,-!p1@CSRNP1!1.75!329.99!CSRNP1;;chr10:8096772..8096787,+!p2@GATA3!1.74!62.71!GATA3;;chr19:16435625..16435682,+!p1@KLF2!1.69!1444.97!KLF2;;chr9:3525727..3525828,-!p2@RFX3!1.69!119.25!RFX3;;chr6:106546808..106546833,+!p3@PRDM1!1.69!59.21!PRDM1;;chr2:231090433..231090469,+!p1@SP140!1.67!45.85!SP140;;chr10:35484053..35484076,+!p1@CREM!1.63!100.33!CREM;;chr9:102584241..102584261,+!p4@NR4A3!1.62!62.71!NR4A3;;chr2:43453734..43453751,-!p1@ZFP36L2!1.58!3695.07!ZFP36L2;;chr9:117150254..117150271,-!p1@AKNA!1.57!95.60!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.56!35.36!LEF1;;chr6:91006518..91006570,-!p1@BACH2!1.54!75.04!BACH2;;chr8:123793988..123794016,+!p1@ZHX2!1.54!57.77!ZHX2;;chr3:71355163..71355209,-!p5@FOXP1!1.51!43.38!FOXP1;;chr14:64971288..64971316,-!p2@ZBTB25!1.49!88.82!ZBTB25;;chr7:50343895..50343936,+!p5@IKZF1!1.48!28.99!IKZF1;;chr14:75746722..75746777,+!p2@FOS!1.47!35.98!FOS;;chr17:38497662..38497713,+!p4@RARA!1.47!33.10!RARA;;chr14:99738138..99738163,-!p1@BCL11B!1.47!28.78!BCL11B;;chr1:59249688..59249703,-!p3@JUN!1.46!160.57!JUN;;chr3:18486354..18486377,-!p2@SATB1!1.46!34.34!SATB1;;chr19:54041645..54041661,+!p5@ZNF331!1.46!27.76!ZNF331;;chr3:39195037..39195069,-!p2@CSRNP1!1.45!163.86!CSRNP1;;chrX:49121165..49121179,-!p1@FOXP3!1.45!27.14!FOXP3;;chr7:104654690..104654704,+!p2@MLL5!1.44!51.61!MLL5;;chr6:106546834..106546850,+!p4@PRDM1!1.44!26.52!PRDM1;;chr3:39195139..39195150,-!p3@CSRNP1!1.43!32.90!CSRNP1;;chr3:23986824..23986848,+!p2@NR1D2!1.42!137.34!NR1D2;;chrX:106960180..106960197,-!p2@TSC22D3!1.41!92.32!TSC22D3;;chr3:71542615..71542644,-!p12@FOXP1!1.40!24.06!FOXP1;;chr19:19729477..19729542,-!p1@PBX4!1.39!49.96!PBX4;;chr7:104654718..104654741,+!p3@MLL5!1.39!33.72!MLL5;;chr2:192015750..192015793,-!p2@STAT4!1.38!30.63!STAT4;;chr2:157189617..157189667,-!p4@NR4A2!1.38!23.23!NR4A2;;chr9:102584278..102584285,+!p5@NR4A3!1.37!22.62!NR4A3;;chr17:45810594..45810608,+!p1@TBX21!1.37!22.41!TBX21;;chrX:106960221..106960236,-!p3@TSC22D3!1.36!59.42!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.35!28.78!THAP2;;chr2:192015677..192015691,-!p3@STAT4!1.35!21.18!STAT4;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.80!NR4A3;;chr5:133451347..133451358,+!p3@TCF7!1.34!20.97!TCF7;;chr17:38020392..38020477,-!p1@IKZF3!1.34!20.97!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.34!20.77!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.33!70.52!RUNX1;;chr3:71542684..71542720,-!p18@FOXP1!1.33!20.15!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.32!19.94!LEF1;;chr1:59249707..59249727,-!p1@JUN!1.31!790.54!JUN;;chr10:35416142..35416169,+!p3@CREM!1.31!50.58!CREM;;chr10:3824332..3824425,-!p4@KLF6!1.31!31.46!KLF6;;chr16:79634624..79634642,-!p1@MAF!1.30!72.37!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.30!36.19!NR4A3;;chr6:391743..391759,+!p1@IRF4!1.30!19.12!IRF4;;chr18:77155922..77155939,+!p1@NFATC1!1.29!49.55!NFATC1;;chr2:97202480..97202499,+!p1@ARID5A!1.28!177.23!ARID5A;;chr10:135121763..135121783,+!p5@ZNF511!1.28!18.09!ZNF511;;chr14:64970670..64970712,-!p3@ZBTB25!1.27!37.83!ZBTB25;;chr14:75988831..75988847,+!p2@BATF!1.27!17.68!BATF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.65!ZBED1;;chr4:38665769..38665801,+!p2@KLF3!1.24!145.77!KLF3;;chr6:91006575..91006602,-!p2@BACH2!1.24!24.47!BACH2;;chr10:35484090..35484104,+!p6@CREM!1.24!16.45!CREM;;chr18:46475696..46475713,-!p1@SMAD7!1.23!17.89!SMAD7;;chr12:51158359..51158395,+!p4@ATF1!1.23!15.83!ATF1;;chr3:71542651..71542683,-!p22@FOXP1!1.23!15.83!FOXP1;;chr11:128392273..128392308,-!p2@ETS1!1.21!63.94!ETS1;;chr19:12721790..12721810,+!p2@ZNF791!1.21!41.74!ZNF791;;chr8:81397820..81397836,+!p2@ZBTB10!1.21!19.12!ZBTB10;;chr13:74707894..74707947,-!p6@KLF12!1.21!16.86!KLF12;;chr17:37934365..37934387,-!p2@IKZF3!1.20!14.80!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.19!553.68!IRF1;;chr7:50344251..50344288,+!p3@IKZF1!1.19!14.60!IKZF1;;chr2:97202991..97203043,+!p3@ARID5A!1.19!14.60!ARID5A;;chr11:128392085..128392232,-!p1@ETS1!1.18!469.80!ETS1;;chr11:67007548..67007610,+!p3@KDM2A!1.18!103.83!KDM2A;;chr14:99737850..99737852,-!p3@BCL11B!1.18!14.19!BCL11B;;chr20:56195474..56195506,-!p1@ZBP1!1.18!13.98!ZBP1;;chr13:41240717..41240735,-!p2@FOXO1!1.17!93.14!FOXO1;;chr3:63898321..63898396,+!p3@ATXN7!1.17!31.46!ATXN7;;chr8:60031619..60031676,-!p1@TOX!1.16!29.40!TOX;;chr19:54041574..54041589,+!p6@ZNF331!1.16!13.36!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!1.15!995.73!KLF6;;chr16:79634595..79634620,-!p2@MAF!1.15!24.06!MAF;;chr15:60884747..60884774,-!p3@RORA!1.14!31.46!RORA;;chrX:106960249..106960260,-!p5@TSC22D3!1.14!20.35!TSC22D3;;chr4:109088130..109088163,-!p13@LEF1!1.13!12.54!LEF1;;chr2:61108695..61108753,+!p1@REL!1.12!84.71!REL;;chr10:104154246..104154347,+!p3@NFKB2!1.12!75.25!NFKB2;;chr8:81397846..81397860,+!p3@ZBTB10!1.12!15.21!ZBTB10;;chr5:142814241..142814278,-!p12@NR3C1!1.12!12.13!NR3C1;;chr7:50344289..50344323,+!p1@IKZF1!1.12!12.13!IKZF1;;chr1:45805693..45805718,+!p3@TOE1!1.11!25.70!TOE1;;chr19:18392422..18392440,-!p1@JUND!1.10!1584.78!JUND;;chr1:59249732..59249749,-!p2@JUN!1.10!138.58!JUN;;chr2:208394817..208394834,+!p3@CREB1!1.10!47.29!CREB1;;chr12:72056773..72056796,+!p3@THAP2!1.10!15.21!THAP2;;chr19:54041603..54041615,+!p10@ZNF331!1.10!11.72!ZNF331;;chr14:75988771..75988826,+!p1@BATF!1.09!15.01!BATF;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.60!HIVEP1;;chr10:104154415..104154434,+!p5@NFKB2!1.08!10.90!NFKB2;;chr9:73028332..73028385,-!p3@KLF9!1.07!37.21!KLF9;;chr19:12444440..12444455,-!p1@ZNF563!1.07!18.71!ZNF563;;chr19:16435523..16435619,+!p2@KLF2!1.07!15.01!KLF2;;chr7:106809470..106809481,+!p2@HBP1!1.07!15.01!HBP1;;chr14:35873947..35873965,-!p1@NFKBIA!1.06!660.80!NFKBIA;;chr10:35416125..35416138,+!p10@CREM!1.06!12.34!CREM;;chr20:51589835..51589848,+!p5@TSHZ2!1.06!10.49!TSHZ2;;chr12:57914286..57914304,-!p1@DDIT3!1.05!370.08!DDIT3;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.91!NFKB1;;chr14:64971461..64971542,+!p1@ZBTB1!1.05!207.25!ZBTB1;;chr15:31619326..31619390,+!p2@KLF13!1.05!118.84!KLF13;;chr2:208031542..208031595,-!p2@KLF7!1.05!72.37!KLF7;;chr5:142782823..142782854,-!p3@NR3C1!1.05!14.60!NR3C1;;chr2:157186630..157186686,-!p6@NR4A2!1.04!10.07!NR4A2;;chr14:75747250..75747267,+!p5@FOS!1.03!9.66!FOS;;chr11:128563948..128564003,+!p1@FLI1!1.02!116.58!FLI1;;chr13:41593425..41593480,-!p1@ELF1!1.02!60.86!ELF1;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.48!NR1D1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!45.85!HIVEP2;;chr9:32550839..32550962,-!p3@TOPORS!1.01!23.64!TOPORS;;chr14:74353454..74353469,+!p4@ZNF410!1.01!17.89!ZNF410;;chr17:7388010..7388017,-!p5@ZBTB4!1.01!15.83!ZBTB4;;chr19:45972701..45972774,+!p2@FOSB!1.01!12.75!FOSB;;chr9:2015335..2015370,+!p1@SMARCA2!1.00!113.08!SMARCA2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.00!112.46!ZC3H12A;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.29!FOXP1;;chr19:18391593..18391611,-!p6@JUND!1.00!15.01!JUND;;chr4:109089901..109089930,-!p3@LEF1!1.00!9.05!LEF1;;chr7:127032330..127032356,-!p3@ZNF800!0.99!11.31!ZNF800;;chr8:102218439..102218455,-!p3@ZNF706!0.99!8.84!ZNF706;;chr4:38665810..38665827,+!p1@KLF3!0.98!126.24!KLF3;;chr10:3827371..3827386,-!p2@KLF6!0.98!74.63!KLF6;;chr2:61108650..61108687,+!p2@REL!0.98!42.97!REL;;chr1:91487774..91487802,-!p2@ZNF644!0.98!23.44!ZNF644;;chr11:67007611..67007622,+!p6@KDM2A!0.98!11.51!KDM2A;;chr20:51588873..51588953,+!p1@TSHZ2!0.98!11.31!TSHZ2;;chr1:67390715..67390733,+!p7@MIER1!0.98!10.90!MIER1;;chr19:54040550..54040594,+!p20@ZNF331!0.98!8.64!ZNF331;;chr10:35416172..35416184,+!p13@CREM!0.98!8.64!CREM;;chr10:35416223..35416234,+!p12@CREM!0.98!8.64!CREM;;chr17:38497715..38497734,+!p8@RARA!0.98!8.64!RARA;;chr3:71114066..71114114,-!p1@FOXP1!0.97!175.58!FOXP1;;chr2:174828545..174828644,-!p1@SP3!0.97!132.41!SP3;;chr14:90085458..90085557,-!p1@FOXN3!0.97!89.44!FOXN3;;chr1:157108130..157108173,-!p1@ETV3!0.97!61.89!ETV3;;chr14:65569101..65569119,-!p3@MAX!0.97!27.34!MAX;;chr3:150126904..150126958,+!p7@TSC22D2!0.97!15.01!TSC22D2;;chr17:53342311..53342400,+!p1@HLF!0.97!9.66!HLF;;chr3:18487057..18487105,-!p4@SATB1!0.97!8.43!SATB1;;chr6:106546786..106546802,+!p6@PRDM1!0.97!8.43!PRDM1;;chr11:67007477..67007493,+!p2@KDM2A!0.96!71.55!KDM2A;;chr3:5020939..5020952,+!p2@BHLHE40!0.96!26.11!BHLHE40;;chr13:74708269..74708291,-!p7@KLF12!0.96!11.10!KLF12;;chr3:18480217..18480239,-!p3@SATB1!0.96!8.22!SATB1;;chr14:75746781..75746799,+!p6@FOS!0.96!8.22!FOS;;chr14:75747296..75747329,+!p4@FOS!0.96!8.22!FOS;;chr19:16435423..16435484,+!p5@KLF2!0.96!8.22!KLF2;;chr2:37459082..37459102,-!p3@CEBPZ!0.96!8.02!CEBPZ;;chr4:109088089..109088101,-!p11@LEF1!0.96!8.02!LEF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!424.57!NFKBIZ;;chr5:172483347..172483407,+!p1@C5orf41!0.95!62.30!CREBRF;;chr15:31619407..31619419,+!p9@KLF13!0.95!9.87!KLF13;;chr5:142784730..142784751,-!p26@NR3C1!0.95!7.81!NR3C1;;chr14:35872453..35872485,-!p2@NFKBIA!0.94!19.33!NFKBIA;;chr11:13299319..13299424,+!p1@ARNTL!0.93!78.33!ARNTL;;chr10:3827417..3827428,-!p3@KLF6!0.93!67.23!KLF6;;chr7:21467674..21467727,+!p1@SP4!0.93!31.25!SP4;;chr19:52674696..52674758,-!p1@ZNF836!0.93!23.03!ZNF836;;chr19:19779619..19779670,+!p1@ZNF101!0.93!21.79!ZNF101;;chr6:15249128..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| |expression_enrichment_score=chr2:157189180..157189290,-!p1@NR4A2!2.16!713.64!NR4A2;;chr1:25256756..25256774,-!p1@RUNX3!2.09!222.67!RUNX3;;chr7:50343634..50343717,+!p2@IKZF1!1.99!95.81!IKZF1;;chr9:102584262..102584276,+!p1@NR4A3!1.98!203.34!NR4A3;;chr19:54058073..54058088,+!p1@ZNF331!1.97!91.90!ZNF331;;chr5:133451294..133451310,+!p2@TCF7!1.95!88.00!TCF7;;chr19:45971246..45971265,+!p1@FOSB!1.90!1352.24!FOSB;;chr19:54041669..54041697,+!p2@ZNF331!1.89!76.69!ZNF331;;chr3:63953435..63953499,+!p1@ATXN7!1.89!76.28!ATXN7;;chr14:75745523..75745537,+!p1@FOS!1.88!8275.46!FOS;;chrX:106960285..106960299,-!p1@TSC22D3!1.87!1849.80!TSC22D3;;chr5:133450365..133450444,+!p1@TCF7!1.85!300.59!TCF7;;chr15:60884706..60884743,-!p1@RORA!1.81!311.69!RORA;;chr20:50159198..50159299,-!p1@NFATC2!1.81!90.46!NFATC2;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.74!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.78!70.73!GATA3;;chr19:12902289..12902307,+!p1@JUNB!1.76!12022.55!JUNB;;chr3:39195075..39195088,-!p1@CSRNP1!1.75!329.99!CSRNP1;;chr10:8096772..8096787,+!p2@GATA3!1.74!62.71!GATA3;;chr19:16435625..16435682,+!p1@KLF2!1.69!1444.97!KLF2;;chr9:3525727..3525828,-!p2@RFX3!1.69!119.25!RFX3;;chr6:106546808..106546833,+!p3@PRDM1!1.69!59.21!PRDM1;;chr2:231090433..231090469,+!p1@SP140!1.67!45.85!SP140;;chr10:35484053..35484076,+!p1@CREM!1.63!100.33!CREM;;chr9:102584241..102584261,+!p4@NR4A3!1.62!62.71!NR4A3;;chr2:43453734..43453751,-!p1@ZFP36L2!1.58!3695.07!ZFP36L2;;chr9:117150254..117150271,-!p1@AKNA!1.57!95.60!AKNA;;chr4:109087445..109087463,-!p1@LEF1!1.56!35.36!LEF1;;chr6:91006518..91006570,-!p1@BACH2!1.54!75.04!BACH2;;chr8:123793988..123794016,+!p1@ZHX2!1.54!57.77!ZHX2;;chr3:71355163..71355209,-!p5@FOXP1!1.51!43.38!FOXP1;;chr14:64971288..64971316,-!p2@ZBTB25!1.49!88.82!ZBTB25;;chr7:50343895..50343936,+!p5@IKZF1!1.48!28.99!IKZF1;;chr14:75746722..75746777,+!p2@FOS!1.47!35.98!FOS;;chr17:38497662..38497713,+!p4@RARA!1.47!33.10!RARA;;chr14:99738138..99738163,-!p1@BCL11B!1.47!28.78!BCL11B;;chr1:59249688..59249703,-!p3@JUN!1.46!160.57!JUN;;chr3:18486354..18486377,-!p2@SATB1!1.46!34.34!SATB1;;chr19:54041645..54041661,+!p5@ZNF331!1.46!27.76!ZNF331;;chr3:39195037..39195069,-!p2@CSRNP1!1.45!163.86!CSRNP1;;chrX:49121165..49121179,-!p1@FOXP3!1.45!27.14!FOXP3;;chr7:104654690..104654704,+!p2@MLL5!1.44!51.61!MLL5;;chr6:106546834..106546850,+!p4@PRDM1!1.44!26.52!PRDM1;;chr3:39195139..39195150,-!p3@CSRNP1!1.43!32.90!CSRNP1;;chr3:23986824..23986848,+!p2@NR1D2!1.42!137.34!NR1D2;;chrX:106960180..106960197,-!p2@TSC22D3!1.41!92.32!TSC22D3;;chr3:71542615..71542644,-!p12@FOXP1!1.40!24.06!FOXP1;;chr19:19729477..19729542,-!p1@PBX4!1.39!49.96!PBX4;;chr7:104654718..104654741,+!p3@MLL5!1.39!33.72!MLL5;;chr2:192015750..192015793,-!p2@STAT4!1.38!30.63!STAT4;;chr2:157189617..157189667,-!p4@NR4A2!1.38!23.23!NR4A2;;chr9:102584278..102584285,+!p5@NR4A3!1.37!22.62!NR4A3;;chr17:45810594..45810608,+!p1@TBX21!1.37!22.41!TBX21;;chrX:106960221..106960236,-!p3@TSC22D3!1.36!59.42!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.35!28.78!THAP2;;chr2:192015677..192015691,-!p3@STAT4!1.35!21.18!STAT4;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.80!NR4A3;;chr5:133451347..133451358,+!p3@TCF7!1.34!20.97!TCF7;;chr17:38020392..38020477,-!p1@IKZF3!1.34!20.97!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.34!20.77!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.33!70.52!RUNX1;;chr3:71542684..71542720,-!p18@FOXP1!1.33!20.15!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.32!19.94!LEF1;;chr1:59249707..59249727,-!p1@JUN!1.31!790.54!JUN;;chr10:35416142..35416169,+!p3@CREM!1.31!50.58!CREM;;chr10:3824332..3824425,-!p4@KLF6!1.31!31.46!KLF6;;chr16:79634624..79634642,-!p1@MAF!1.30!72.37!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.30!36.19!NR4A3;;chr6:391743..391759,+!p1@IRF4!1.30!19.12!IRF4;;chr18:77155922..77155939,+!p1@NFATC1!1.29!49.55!NFATC1;;chr2:97202480..97202499,+!p1@ARID5A!1.28!177.23!ARID5A;;chr10:135121763..135121783,+!p5@ZNF511!1.28!18.09!ZNF511;;chr14:64970670..64970712,-!p3@ZBTB25!1.27!37.83!ZBTB25;;chr14:75988831..75988847,+!p2@BATF!1.27!17.68!BATF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.65!ZBED1;;chr4:38665769..38665801,+!p2@KLF3!1.24!145.77!KLF3;;chr6:91006575..91006602,-!p2@BACH2!1.24!24.47!BACH2;;chr10:35484090..35484104,+!p6@CREM!1.24!16.45!CREM;;chr18:46475696..46475713,-!p1@SMAD7!1.23!17.89!SMAD7;;chr12:51158359..51158395,+!p4@ATF1!1.23!15.83!ATF1;;chr3:71542651..71542683,-!p22@FOXP1!1.23!15.83!FOXP1;;chr11:128392273..128392308,-!p2@ETS1!1.21!63.94!ETS1;;chr19:12721790..12721810,+!p2@ZNF791!1.21!41.74!ZNF791;;chr8:81397820..81397836,+!p2@ZBTB10!1.21!19.12!ZBTB10;;chr13:74707894..74707947,-!p6@KLF12!1.21!16.86!KLF12;;chr17:37934365..37934387,-!p2@IKZF3!1.20!14.80!IKZF3;;chr5:131826457..131826514,-!p1@IRF1!1.19!553.68!IRF1;;chr7:50344251..50344288,+!p3@IKZF1!1.19!14.60!IKZF1;;chr2:97202991..97203043,+!p3@ARID5A!1.19!14.60!ARID5A;;chr11:128392085..128392232,-!p1@ETS1!1.18!469.80!ETS1;;chr11:67007548..67007610,+!p3@KDM2A!1.18!103.83!KDM2A;;chr14:99737850..99737852,-!p3@BCL11B!1.18!14.19!BCL11B;;chr20:56195474..56195506,-!p1@ZBP1!1.18!13.98!ZBP1;;chr13:41240717..41240735,-!p2@FOXO1!1.17!93.14!FOXO1;;chr3:63898321..63898396,+!p3@ATXN7!1.17!31.46!ATXN7;;chr8:60031619..60031676,-!p1@TOX!1.16!29.40!TOX;;chr19:54041574..54041589,+!p6@ZNF331!1.16!13.36!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!1.15!995.73!KLF6;;chr16:79634595..79634620,-!p2@MAF!1.15!24.06!MAF;;chr15:60884747..60884774,-!p3@RORA!1.14!31.46!RORA;;chrX:106960249..106960260,-!p5@TSC22D3!1.14!20.35!TSC22D3;;chr4:109088130..109088163,-!p13@LEF1!1.13!12.54!LEF1;;chr2:61108695..61108753,+!p1@REL!1.12!84.71!REL;;chr10:104154246..104154347,+!p3@NFKB2!1.12!75.25!NFKB2;;chr8:81397846..81397860,+!p3@ZBTB10!1.12!15.21!ZBTB10;;chr5:142814241..142814278,-!p12@NR3C1!1.12!12.13!NR3C1;;chr7:50344289..50344323,+!p1@IKZF1!1.12!12.13!IKZF1;;chr1:45805693..45805718,+!p3@TOE1!1.11!25.70!TOE1;;chr19:18392422..18392440,-!p1@JUND!1.10!1584.78!JUND;;chr1:59249732..59249749,-!p2@JUN!1.10!138.58!JUN;;chr2:208394817..208394834,+!p3@CREB1!1.10!47.29!CREB1;;chr12:72056773..72056796,+!p3@THAP2!1.10!15.21!THAP2;;chr19:54041603..54041615,+!p10@ZNF331!1.10!11.72!ZNF331;;chr14:75988771..75988826,+!p1@BATF!1.09!15.01!BATF;;chr6:12009042..12009092,+!p6@HIVEP1!1.09!14.60!HIVEP1;;chr10:104154415..104154434,+!p5@NFKB2!1.08!10.90!NFKB2;;chr9:73028332..73028385,-!p3@KLF9!1.07!37.21!KLF9;;chr19:12444440..12444455,-!p1@ZNF563!1.07!18.71!ZNF563;;chr19:16435523..16435619,+!p2@KLF2!1.07!15.01!KLF2;;chr7:106809470..106809481,+!p2@HBP1!1.07!15.01!HBP1;;chr14:35873947..35873965,-!p1@NFKBIA!1.06!660.80!NFKBIA;;chr10:35416125..35416138,+!p10@CREM!1.06!12.34!CREM;;chr20:51589835..51589848,+!p5@TSHZ2!1.06!10.49!TSHZ2;;chr12:57914286..57914304,-!p1@DDIT3!1.05!370.08!DDIT3;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.91!NFKB1;;chr14:64971461..64971542,+!p1@ZBTB1!1.05!207.25!ZBTB1;;chr15:31619326..31619390,+!p2@KLF13!1.05!118.84!KLF13;;chr2:208031542..208031595,-!p2@KLF7!1.05!72.37!KLF7;;chr5:142782823..142782854,-!p3@NR3C1!1.05!14.60!NR3C1;;chr2:157186630..157186686,-!p6@NR4A2!1.04!10.07!NR4A2;;chr14:75747250..75747267,+!p5@FOS!1.03!9.66!FOS;;chr11:128563948..128564003,+!p1@FLI1!1.02!116.58!FLI1;;chr13:41593425..41593480,-!p1@ELF1!1.02!60.86!ELF1;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.48!NR1D1;;chr6:143266297..143266356,-!p1@HIVEP2!1.01!45.85!HIVEP2;;chr9:32550839..32550962,-!p3@TOPORS!1.01!23.64!TOPORS;;chr14:74353454..74353469,+!p4@ZNF410!1.01!17.89!ZNF410;;chr17:7388010..7388017,-!p5@ZBTB4!1.01!15.83!ZBTB4;;chr19:45972701..45972774,+!p2@FOSB!1.01!12.75!FOSB;;chr9:2015335..2015370,+!p1@SMARCA2!1.00!113.08!SMARCA2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.00!112.46!ZC3H12A;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.29!FOXP1;;chr19:18391593..18391611,-!p6@JUND!1.00!15.01!JUND;;chr4:109089901..109089930,-!p3@LEF1!1.00!9.05!LEF1;;chr7:127032330..127032356,-!p3@ZNF800!0.99!11.31!ZNF800;;chr8:102218439..102218455,-!p3@ZNF706!0.99!8.84!ZNF706;;chr4:38665810..38665827,+!p1@KLF3!0.98!126.24!KLF3;;chr10:3827371..3827386,-!p2@KLF6!0.98!74.63!KLF6;;chr2:61108650..61108687,+!p2@REL!0.98!42.97!REL;;chr1:91487774..91487802,-!p2@ZNF644!0.98!23.44!ZNF644;;chr11:67007611..67007622,+!p6@KDM2A!0.98!11.51!KDM2A;;chr20:51588873..51588953,+!p1@TSHZ2!0.98!11.31!TSHZ2;;chr1:67390715..67390733,+!p7@MIER1!0.98!10.90!MIER1;;chr19:54040550..54040594,+!p20@ZNF331!0.98!8.64!ZNF331;;chr10:35416172..35416184,+!p13@CREM!0.98!8.64!CREM;;chr10:35416223..35416234,+!p12@CREM!0.98!8.64!CREM;;chr17:38497715..38497734,+!p8@RARA!0.98!8.64!RARA;;chr3:71114066..71114114,-!p1@FOXP1!0.97!175.58!FOXP1;;chr2:174828545..174828644,-!p1@SP3!0.97!132.41!SP3;;chr14:90085458..90085557,-!p1@FOXN3!0.97!89.44!FOXN3;;chr1:157108130..157108173,-!p1@ETV3!0.97!61.89!ETV3;;chr14:65569101..65569119,-!p3@MAX!0.97!27.34!MAX;;chr3:150126904..150126958,+!p7@TSC22D2!0.97!15.01!TSC22D2;;chr17:53342311..53342400,+!p1@HLF!0.97!9.66!HLF;;chr3:18487057..18487105,-!p4@SATB1!0.97!8.43!SATB1;;chr6:106546786..106546802,+!p6@PRDM1!0.97!8.43!PRDM1;;chr11:67007477..67007493,+!p2@KDM2A!0.96!71.55!KDM2A;;chr3:5020939..5020952,+!p2@BHLHE40!0.96!26.11!BHLHE40;;chr13:74708269..74708291,-!p7@KLF12!0.96!11.10!KLF12;;chr3:18480217..18480239,-!p3@SATB1!0.96!8.22!SATB1;;chr14:75746781..75746799,+!p6@FOS!0.96!8.22!FOS;;chr14:75747296..75747329,+!p4@FOS!0.96!8.22!FOS;;chr19:16435423..16435484,+!p5@KLF2!0.96!8.22!KLF2;;chr2:37459082..37459102,-!p3@CEBPZ!0.96!8.02!CEBPZ;;chr4:109088089..109088101,-!p11@LEF1!0.96!8.02!LEF1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.95!424.57!NFKBIZ;;chr5:172483347..172483407,+!p1@C5orf41!0.95!62.30!CREBRF;;chr15:31619407..31619419,+!p9@KLF13!0.95!9.87!KLF13;;chr5:142784730..142784751,-!p26@NR3C1!0.95!7.81!NR3C1;;chr14:35872453..35872485,-!p2@NFKBIA!0.94!19.33!NFKBIA;;chr11:13299319..13299424,+!p1@ARNTL!0.93!78.33!ARNTL;;chr10:3827417..3827428,-!p3@KLF6!0.93!67.23!KLF6;;chr7:21467674..21467727,+!p1@SP4!0.93!31.25!SP4;;chr19:52674696..52674758,-!p1@ZNF836!0.93!23.03!ZNF836;;chr19:19779619..19779670,+!p1@ZNF101!0.93!21.79!ZNF101;;chr6:15249128..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252b%2520T%2520Cells%252c%2520donor3.CNhs11998.11382-118B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11382-118B5 | |id=FF:11382-118B5 | ||
|is_a=EFO:0002091;;FF:0000031;;FF:0000210 | |is_a=EFO:0002091;;FF:0000031;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11998 | |||
|library_id_phase_based=2:CNhs11998 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11382 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTGAAA.11382 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11382 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTGAAA.11382 | |||
|name=CD4+ T Cells, donor3 | |name=CD4+ T Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11998,LSID837,release011,COMPLETED | |profile_hcage=CNhs11998,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=3H100-23-10 | |rna_catalog_number=3H100-23-10 | ||
Line 59: | Line 82: | ||
|rna_tube_id=118B5 | |rna_tube_id=118B5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10010.GTGAAA | |||
|sample_age=26 | |sample_age=26 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 106: | ||
|top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522 | |top_motifs=CREB1:3.84802665839;PAX3,7:3.82302543213;ATF4:3.65430851591;ATF5_CREB3:3.25111886335;FOX{D1,D2}:3.00078418;BPTF:2.85934729442;RUNX1..3:2.70816678806;RFX2..5_RFXANK_RFXAP:2.58811403984;FOXO1,3,4:2.57578581266;RORA:2.57395391945;FOXN1:2.56042384263;FOX{F1,F2,J1}:2.53430623774;CDX1,2,4:2.36016473861;NKX6-1,2:2.34577495306;HMX1:2.3224875154;PAX2:2.32122789113;DMAP1_NCOR{1,2}_SMARC:2.29304758268;RFX1:2.25417482785;ZBTB16:2.22720181336;ELF1,2,4:2.16949354317;IKZF2:2.10193112435;FOXP1:1.97626504392;JUN:1.88896717693;ETS1,2:1.80857235052;PITX1..3:1.76195664142;NFKB1_REL_RELA:1.68238908363;T:1.59083150056;SPI1:1.56165364419;ATF6:1.51667578496;PDX1:1.42959191187;BREu{core}:1.37908664557;LEF1_TCF7_TCF7L1,2:1.36828529378;ATF2:1.33985605306;HIF1A:1.32796099317;TGIF1:1.23381072934;PAX4:1.0705750311;SPIB:1.0084437059;NFE2L1:0.936842423176;TOPORS:0.905002315831;TBX4,5:0.90368683647;EP300:0.879945677708;IRF1,2:0.862079790832;FOX{I1,J2}:0.83398338807;NKX2-1,4:0.831948899876;MAFB:0.795445507672;NFATC1..3:0.758643400069;NFIL3:0.743742333754;TLX2:0.730203312779;EGR1..3:0.710800796455;GATA6:0.57797025826;AHR_ARNT_ARNT2:0.535953160561;NANOG{mouse}:0.528785596134;ZEB1:0.506212275593;ZNF384:0.501449042326;PBX1:0.499578225679;PAX6:0.496975063015;MYB:0.45499136909;HES1:0.396534296215;POU2F1..3:0.304384447111;SOX2:0.276088579301;HOX{A6,A7,B6,B7}:0.258135219721;ELK1,4_GABP{A,B1}:0.205323044808;FOSL2:0.199042722709;SNAI1..3:0.18603405803;SREBF1,2:0.156806543054;AIRE:0.120734461923;IRF7:0.118466728987;HBP1_HMGB_SSRP1_UBTF:0.11530605069;MYOD1:0.108667675624;SOX5:0.0518054048297;RREB1:0.0474089285503;SPZ1:0.0398402269552;STAT2,4,6:0.0379890657698;NFIX:0.0197342956351;LMO2:0.0127707516923;FOXD3:0.00160281971169;PPARG:-0.000251299003539;CUX2:-0.0265692902743;FOS_FOS{B,L1}_JUN{B,D}:-0.031720787947;FOXP3:-0.0377942938969;NFY{A,B,C}:-0.0442553509642;SMAD1..7,9:-0.0642976224057;STAT5{A,B}:-0.064550647353;MYFfamily:-0.0692094353157;CEBPA,B_DDIT3:-0.0946888342247;SRF:-0.0970441981072;NKX3-1:-0.0977013138201;BACH2:-0.0990830329717;HMGA1,2:-0.106742492842;HOXA9_MEIS1:-0.145287621536;DBP:-0.199535767488;NFE2:-0.215638642993;AR:-0.274022306022;ALX4:-0.303839168093;E2F1..5:-0.320060700513;NR5A1,2:-0.321442711483;POU1F1:-0.32927811685;NRF1:-0.331832820797;PAX5:-0.3349498196;MTE{core}:-0.342200670265;FOXL1:-0.357923750153;GCM1,2:-0.358755820071;MED-1{core}:-0.366280614701;FOXQ1:-0.384037246809;FOXA2:-0.394383871292;STAT1,3:-0.406167636696;HNF4A_NR2F1,2:-0.442886213451;RXRA_VDR{dimer}:-0.473269149167;HLF:-0.478991739871;GLI1..3:-0.489462582676;CRX:-0.50871527134;bHLH_family:-0.511953488786;FOXM1:-0.512891512168;OCT4_SOX2{dimer}:-0.545308981724;TFDP1:-0.553757879633;EVI1:-0.566759674767;MZF1:-0.607348477884;HAND1,2:-0.625432734916;ZFP161:-0.628418092712;NKX2-2,8:-0.649627508742;NFE2L2:-0.668441734621;PATZ1:-0.687638649736;HNF1A:-0.732010605668;SP1:-0.739076571179;TAL1_TCF{3,4,12}:-0.751547374467;SOX{8,9,10}:-0.752432728534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.752479196124;PRRX1,2:-0.753746165911;NHLH1,2:-0.754143025154;UFEwm:-0.794143138291;YY1:-0.816603002274;GATA4:-0.826080912489;MTF1:-0.832397917302;TFAP4:-0.839482662611;TBP:-0.894576337438;ONECUT1,2:-0.918160061954;ZBTB6:-0.92705701116;MEF2{A,B,C,D}:-0.931954447157;POU3F1..4:-0.932661016146;MAZ:-0.950932764555;GFI1:-0.979851330393;NANOG:-0.995100732591;REST:-1.0016234565;TEF:-1.02045403563;TFAP2B:-1.03710481764;ZNF148:-1.09635292256;TFAP2{A,C}:-1.10286732615;ZNF423:-1.11411781234;ZIC1..3:-1.11793886698;LHX3,4:-1.1198898802;ARID5B:-1.12807968031;TFCP2:-1.13135297626;ZNF143:-1.13199890466;HIC1:-1.23334628671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.26748366245;XCPE1{core}:-1.29015633718;XBP1:-1.30393253619;TP53:-1.31065267066;SOX17:-1.3185580169;RBPJ:-1.33508032133;ALX1:-1.33705609388;PAX8:-1.34054056108;CDC5L:-1.3804031893;POU6F1:-1.38810812793;NR6A1:-1.39630811475;HSF1,2:-1.40469277723;VSX1,2:-1.45749610513;NR1H4:-1.51495281231;MYBL2:-1.56000784348;GFI1B:-1.56307046877;HOX{A5,B5}:-1.59432879658;POU5F1:-1.68688686201;PRDM1:-1.69180304072;TLX1..3_NFIC{dimer}:-1.70825714742;TEAD1:-1.72553805374;GTF2I:-1.73086592672;NKX2-3_NKX2-5:-1.74518425228;GTF2A1,2:-1.7601487327;ESRRA:-1.7953050271;ZNF238:-1.8248359546;KLF4:-1.8727093535;HOX{A4,D4}:-1.87768541063;GZF1:-2.11329856392;EBF1:-2.1244914391;EN1,2:-2.12571911546;ADNP_IRX_SIX_ZHX:-2.13999595905;PAX1,9:-2.15627545477;RXR{A,B,G}:-2.17934483724;NKX3-2:-2.37223303503;ESR1:-2.48768217019;IKZF1:-2.60537184767;NR3C1:-2.62280856522 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11382-118B5;search_select_hide=table117:FF:11382-118B5 | |||
}} | }} |
Latest revision as of 17:56, 4 June 2020
Name: | CD4+ T Cells, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11998 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11998
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11998
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.96 |
10 | 10 | 0.00942 |
100 | 100 | 0.639 |
101 | 101 | 0.384 |
102 | 102 | 0.839 |
103 | 103 | 0.326 |
104 | 104 | 0.945 |
105 | 105 | 0.943 |
106 | 106 | 0.276 |
107 | 107 | 0.0114 |
108 | 108 | 0.767 |
109 | 109 | 0.958 |
11 | 11 | 0.768 |
110 | 110 | 0.433 |
111 | 111 | 0.853 |
112 | 112 | 0.909 |
113 | 113 | 0.387 |
114 | 114 | 0.944 |
115 | 115 | 0.664 |
116 | 116 | 0.143 |
117 | 117 | 0.00816 |
118 | 118 | 0.485 |
119 | 119 | 0.315 |
12 | 12 | 0.855 |
120 | 120 | 0.473 |
121 | 121 | 0.559 |
122 | 122 | 0.902 |
123 | 123 | 1.8901e-4 |
124 | 124 | 0.601 |
125 | 125 | 0.78 |
126 | 126 | 0.914 |
127 | 127 | 0.62 |
128 | 128 | 0.639 |
129 | 129 | 0.413 |
13 | 13 | 0.761 |
130 | 130 | 0.172 |
131 | 131 | 0.679 |
132 | 132 | 0.232 |
133 | 133 | 0.878 |
134 | 134 | 0.89 |
135 | 135 | 0.293 |
136 | 136 | 0.706 |
137 | 137 | 0.0289 |
138 | 138 | 0.624 |
139 | 139 | 0.0987 |
14 | 14 | 0.811 |
140 | 140 | 0.381 |
141 | 141 | 0.888 |
142 | 142 | 0.383 |
143 | 143 | 0.0431 |
144 | 144 | 0.874 |
145 | 145 | 0.367 |
146 | 146 | 0.239 |
147 | 147 | 0.0312 |
148 | 148 | 0.58 |
149 | 149 | 0.175 |
15 | 15 | 0.472 |
150 | 150 | 0.975 |
151 | 151 | 0.643 |
152 | 152 | 0.694 |
153 | 153 | 0.665 |
154 | 154 | 0.159 |
155 | 155 | 0.0554 |
156 | 156 | 0.807 |
157 | 157 | 0.669 |
158 | 158 | 0.00492 |
159 | 159 | 0.804 |
16 | 16 | 0.274 |
160 | 160 | 0.0321 |
161 | 161 | 0.659 |
162 | 162 | 0.0135 |
163 | 163 | 0.732 |
164 | 164 | 0.074 |
165 | 165 | 0.852 |
166 | 166 | 0.257 |
167 | 167 | 0.147 |
168 | 168 | 0.43 |
169 | 169 | 0.109 |
17 | 17 | 0.579 |
18 | 18 | 0.658 |
19 | 19 | 0.0261 |
2 | 2 | 0.1 |
20 | 20 | 0.157 |
21 | 21 | 0.949 |
22 | 22 | 0.164 |
23 | 23 | 0.863 |
24 | 24 | 0.452 |
25 | 25 | 0.184 |
26 | 26 | 0.984 |
27 | 27 | 0.676 |
28 | 28 | 0.5 |
29 | 29 | 0.0676 |
3 | 3 | 0.692 |
30 | 30 | 0.049 |
31 | 31 | 0.497 |
32 | 32 | 0.00673 |
33 | 33 | 0.415 |
34 | 34 | 0.21 |
35 | 35 | 0.517 |
36 | 36 | 0.142 |
37 | 37 | 0.594 |
38 | 38 | 0.519 |
39 | 39 | 0.295 |
4 | 4 | 0.996 |
40 | 40 | 0.529 |
41 | 41 | 0.192 |
42 | 42 | 0.38 |
43 | 43 | 0.893 |
44 | 44 | 0.864 |
45 | 45 | 0.0857 |
46 | 46 | 0.988 |
47 | 47 | 0.61 |
48 | 48 | 0.973 |
49 | 49 | 0.379 |
5 | 5 | 0.898 |
50 | 50 | 0.398 |
51 | 51 | 0.768 |
52 | 52 | 0.729 |
53 | 53 | 0.448 |
54 | 54 | 0.705 |
55 | 55 | 0.564 |
56 | 56 | 0.675 |
57 | 57 | 0.879 |
58 | 58 | 0.245 |
59 | 59 | 0.134 |
6 | 6 | 0.994 |
60 | 60 | 0.68 |
61 | 61 | 0.347 |
62 | 62 | 0.317 |
63 | 63 | 0.672 |
64 | 64 | 0.97 |
65 | 65 | 0.497 |
66 | 66 | 0.438 |
67 | 67 | 0.457 |
68 | 68 | 0.86 |
69 | 69 | 0.606 |
7 | 7 | 0.803 |
70 | 70 | 0.178 |
71 | 71 | 0.28 |
72 | 72 | 0.61 |
73 | 73 | 0.821 |
74 | 74 | 0.533 |
75 | 75 | 0.0617 |
76 | 76 | 0.177 |
77 | 77 | 0.0015 |
78 | 78 | 0.868 |
79 | 79 | 0.635 |
8 | 8 | 0.295 |
80 | 80 | 0.0822 |
81 | 81 | 0.966 |
82 | 82 | 0.564 |
83 | 83 | 0.709 |
84 | 84 | 0.122 |
85 | 85 | 0.879 |
86 | 86 | 0.0769 |
87 | 87 | 0.629 |
88 | 88 | 0.936 |
89 | 89 | 0.00176 |
9 | 9 | 0.663 |
90 | 90 | 0.411 |
91 | 91 | 0.777 |
92 | 92 | 0.946 |
93 | 93 | 0.842 |
94 | 94 | 0.505 |
95 | 95 | 0.209 |
96 | 96 | 0.953 |
97 | 97 | 0.379 |
98 | 98 | 0.424 |
99 | 99 | 1.57038e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11998
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000031 CD4-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000031 (CD4-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)