FF:11384-118B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00006016 | ||
|accession_numbers=CAGE;DRX008214;DRR009086;DRZ000511;DRZ001896 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00006016 | ||
|accession_numbers=CAGE;DRX008214;DRR009086;DRZ000511;DRZ001896;DRZ011861;DRZ013246 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037007;DRR041373;DRZ007015 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.71!506.84!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.67!470.67!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.25!174.97!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.19!155.03!TFEC;;chr6:391743..391759,+!p1@IRF4!2.14!135.88!IRF4;;chr5:71803177..71803255,-!p1@ZNF366!2.11!128.44!ZNF366;;chr12:54778471..54778528,-!p1@ZNF385A!2.10!125.11!ZNF385A;;chr6:1312325..1312340,+!p1@FOXQ1!2.06!181.49!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!2.03!423.34!CEBPA;;chr10:64576105..64576133,-!p1@EGR2!1.96!180.29!EGR2;;chr16:85932760..85932775,+!p1@IRF8!1.74!54.25!IRF8;;chr3:12330560..12330579,+!p1@PPARG!1.71!57.97!PPARG;;chr11:47399996..47400014,-!p4@SPI1!1.68!47.33!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!1.66!96.53!NR4A3;;chr11:47400032..47400043,-!p5@SPI1!1.62!40.69!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.62!40.29!SPI1;;chr12:12764995..12765017,+!p3@CREBL2!1.55!47.73!CREBL2;;chr11:47279504..47279563,+!p1@NR1H3!1.44!59.43!NR1H3;;chr8:72756063..72756125,-!p1@MSC!1.44!52.65!MSC;;chr7:128577972..128578047,+!p1@IRF5!1.43!40.69!IRF5;;chr2:68592394..68592405,+!p2@PLEK!1.39!23.80!PLEK;;chr11:47400045..47400060,-!p6@SPI1!1.38!22.87!SPI1;;chr11:34642612..34642646,+!p1@EHF!1.38!22.74!EHF;;chr14:75988771..75988826,+!p1@BATF!1.32!26.46!BATF;;chr10:31288398..31288455,-!p2@ZNF438!1.30!21.94!ZNF438;;chr7:50343634..50343717,+!p2@IKZF1!1.30!19.01!IKZF1;;chr12:12764947..12764986,+!p2@CREBL2!1.27!33.77!CREBL2;;chr1:212873084..212873137,-!p2@BATF3!1.27!17.42!BATF3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.28!KDM5D;;chr16:79634624..79634642,-!p1@MAF!1.21!58.90!MAF;;chr19:50432132..50432217,+!p2@ATF5!1.21!18.35!ATF5;;chr1:158975744..158975769,+!p10@IFI16!1.21!15.16!IFI16;;chr22:38609611..38609624,+!p5@MAFF!1.21!15.16!MAFF;;chr16:31141328..31141350,+!p2@KAT8!1.19!14.36!KAT8;;chr22:38609570..38609585,+!p6@MAFF!1.16!13.43!MAFF;;chr7:50344289..50344323,+!p1@IKZF1!1.15!13.16!IKZF1;;chr9:102584278..102584285,+!p5@NR4A3!1.14!12.76!NR4A3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.13!12.37!SEBOX;;chr2:145277640..145277771,-!p1@ZEB2!1.12!161.28!ZEB2;;chr2:239148671..239148686,-!p1@HES6!1.09!41.48!HES6;;chr11:47399920..47399931,-!p7@SPI1!1.07!10.77!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.06!126.44!MAFB;;chr4:26324474..26324501,+!p16@RBPJ!1.06!10.50!RBPJ;;chr19:10416315..10416333,-!p1@ZGLP1!1.06!10.37!ZGLP1;;chr3:69788576..69788648,+!p1@MITF!1.05!55.31!MITF;;chr6:152011654..152011682,+!p1@ESR1!1.05!10.24!ESR1;;chr1:8484007..8484061,-!p13@RERE!1.04!12.76!RERE;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.71!TAL1;;chr22:38609587..38609607,+!p7@MAFF!1.01!9.31!MAFF;;chr16:88752861..88752884,-!p2@SNAI3!1.01!9.17!SNAI3;;chr9:102584159..102584174,+!p2@NR4A3!0.99!16.22!NR4A3;;chr6:44233252..44233296,-!p1@NFKBIE!0.98!86.42!NFKBIE;;chr16:67063211..67063240,+!p2@CBFB!0.98!41.62!CBFB;;chr4:26322267..26322334,+!p3@RBPJ!0.98!21.27!RBPJ;;chr4:26322673..26322684,+!p11@RBPJ!0.98!8.51!RBPJ;;chr3:187463179..187463201,-!p2@BCL6!0.97!35.50!BCL6;;chr15:90544532..90544563,+!p1@ZNF710!0.96!16.75!ZNF710;;chr10:31288370..31288393,-!p3@ZNF438!0.95!7.98!ZNF438;;chr16:79634595..79634620,-!p2@MAF!0.94!14.23!MAF;;chr12:54778351..54778378,-!p6@ZNF385A!0.93!7.58!ZNF385A;;chr3:69811858..69811881,+!p5@MITF!0.93!7.45!MITF;;chr9:102584128..102584144,+!p3@NR4A3!0.91!14.09!NR4A3;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.18!ZFY;;chr7:50344251..50344288,+!p3@IKZF1!0.91!7.05!IKZF1;;chr17:40440481..40440550,+!p1@STAT5A!0.88!49.59!STAT5A;;chr12:54694758..54694805,-!p1@NFE2!0.88!7.98!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.88!6.51!LYL1;;chr7:137620684..137620711,-!p4@CREB3L2!0.88!6.51!CREB3L2;;chr1:40367530..40367597,-!p1@MYCL1!0.86!11.70!MYCL1;;chr1:158985493..158985535,+!p4@IFI16!0.86!9.71!IFI16;;chr3:69811882..69811898,+!p6@MITF!0.85!6.12!MITF;;chr3:48282587..48282603,+!p1@ZNF589!0.83!27.12!ZNF589;;chr3:12392932..12392962,+!p8@PPARG!0.83!5.72!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!0.83!5.72!ZMAT4;;chr16:88752889..88752921,-!p1@SNAI3!0.81!6.51!SNAI3;;chr7:139762641..139762768,-!p1@PARP12!0.80!77.78!PARP12;;chr9:117150254..117150271,-!p1@AKNA!0.80!15.29!AKNA;;chr7:115670792..115670797,-!p2@TFEC!0.80!5.32!TFEC;;chr12:11802753..11802834,+!p2@ETV6!0.79!27.52!ETV6;;chr19:36391434..36391450,-!p1@NFKBID!0.79!10.77!NFKBID;;chr12:12764917..12764931,+!p4@CREBL2!0.79!6.91!CREBL2;;chr12:8186270..8186292,+!p3@FOXJ2!0.79!5.19!FOXJ2;;chr1:212873061..212873080,-!p4@BATF3!0.79!5.19!BATF3;;chr20:50159198..50159299,-!p1@NFATC2!0.78!7.58!NFATC2;;chr1:25256439..25256476,-!p3@RUNX3!0.78!5.05!RUNX3;;chr1:221053049..221053075,+!p3@HLX!0.77!8.91!HLX;;chr9:102584241..102584261,+!p4@NR4A3!0.77!7.98!NR4A3;;chr6:1312155..1312187,+!p2@FOXQ1!0.77!4.92!FOXQ1;;chr1:157108130..157108173,-!p1@ETV3!0.76!37.76!ETV3;;chr2:145277882..145277967,-!p3@ZEB2!0.76!8.64!ZEB2;;chr8:53373491..53373506,-!p4@ST18!0.76!4.79!ST18;;chr10:94449675..94449694,+!p2@HHEX!0.75!13.43!HHEX;;chr20:62462566..62462631,-!p1@ZBTB46!0.75!9.17!ZBTB46;;chr2:61108695..61108753,+!p1@REL!0.74!34.57!REL;;chr1:25256756..25256774,-!p1@RUNX3!0.74!9.04!RUNX3;;chr14:64971438..64971450,+!p2@ZBTB1!0.73!11.04!ZBTB1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.38!HLX;;chr1:212873162..212873188,-!p3@BATF3!0.73!4.39!BATF3;;chr2:70142232..70142251,+!p1@MXD1!0.72!26.99!MXD1;;chr10:94449703..94449718,+!p1@HHEX!0.72!18.08!HHEX;;chr1:212873267..212873332,-!p1@BATF3!0.72!5.98!BATF3;;chr8:72756023..72756055,-!p6@MSC!0.72!5.45!MSC;;chrX:129244430..129244442,-!p5@ELF4!0.72!4.25!ELF4;;chr4:26323870..26323885,+!p13@RBPJ!0.72!4.25!RBPJ;;chr17:61919985..61920012,-!p3@SMARCD2!0.71!11.04!SMARCD2;;chr12:11802932..11802949,+!p3@ETV6!0.71!7.58!ETV6;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.12!NCOR2;;chr1:221052733..221052749,+!p2@HLX!0.70!5.45!HLX;;chr1:41157641..41157665,+!p7@NFYC!0.70!5.32!NFYC;;chr7:28725715..28725727,+!p3@CREB5!0.70!4.92!CREB5;;chr12:54694807..54694832,-!p3@NFE2!0.70!3.99!NFE2;;chr2:97202480..97202499,+!p1@ARID5A!0.69!45.60!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!0.69!28.19!ELF1;;chr21:36421535..36421610,-!p2@RUNX1!0.69!15.69!RUNX1;;chr19:13213662..13213686,-!p1@LYL1!0.69!6.12!LYL1;;chr19:13213704..13213726,-!p3@LYL1!0.69!5.32!LYL1;;chr14:75988831..75988847,+!p2@BATF!0.69!3.86!BATF;;chr7:139762438..139762447,-!p4@PARP12!0.69!3.86!PARP12;;chr6:34204973..34204990,+!p4@HMGA1!0.68!58.63!HMGA1;;chr16:79633894..79633954,-!p3@MAF!0.68!7.84!MAF;;chr18:52989081..52989117,-!p7@TCF4!0.68!6.25!TCF4;;chr7:17338266..17338282,+!p1@AHR!0.67!45.87!AHR;;chr4:87857474..87857489,+!p7@AFF1!0.67!6.91!AFF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.67!3.72!CREB3L2;;chr16:67198683..67198698,+!p2@HSF4!0.67!3.72!HSF4;;chr4:47916543..47916580,-!p2@NFXL1!0.66!13.30!NFXL1;;chr11:64764435..64764449,-!p1@BATF2!0.66!5.19!BATF2;;chr10:64018918..64018936,+!p2@ZNF365!0.66!3.59!ZNF365;;chr1:40367668..40367684,-!p2@MYCL1!0.66!3.59!MYCL1;;chrY:21906761..21906810,-!p2@KDM5D!0.66!3.59!KDM5D;;chr11:128563948..128564003,+!p1@FLI1!0.65!48.53!FLI1;;chr16:31885093..31885165,+!p1@ZNF267!0.64!60.10!ZNF267;;chr17:40440225..40440268,+!p3@STAT5A!0.64!4.52!STAT5A;;chr16:79634581..79634592,-!p4@MAF!0.64!3.32!MAF;;chr10:64575812..64575824,-!p4@EGR2!0.64!3.32!EGR2;;chr11:2292226..2292270,-!p1@ASCL2!0.64!3.32!ASCL2;;chr1:6479968..6479986,-!p1@HES2!0.64!3.32!HES2;;chr4:106068026..106068084,+!p1@TET2!0.63!34.97!TET2;;chr2:145275162..145275202,-!p2@ZEB2!0.63!22.34!ZEB2;;chr16:68119324..68119364,+!p1@NFATC3!0.63!17.15!NFATC3;;chr6:7108855..7108903,+!p5@RREB1!0.63!8.24!RREB1;;chr4:144435112..144435176,+!p3@SMARCA5!0.63!7.45!SMARCA5;;chr1:221052994..221053008,+!p6@HLX!0.63!3.99!HLX;;chrX:129244454..129244488,-!p1@ELF4!0.62!26.99!ELF4;;chr19:926001..926046,+!p1@ARID3A!0.62!12.63!ARID3A;;chr9:137217986..137218049,+!p3@RXRA!0.62!10.37!RXRA;;chr2:46524878..46524891,+!p3@EPAS1!0.62!6.12!EPAS1;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.19!ENO1;;chr7:139762578..139762589,-!p2@PARP12!0.62!3.19!PARP12;;chr2:178129358..178129403,-!p5@NFE2L2!0.61!14.63!NFE2L2;;chr15:100106670..100106697,+!p4@MEF2A!0.61!5.45!MEF2A;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.61!3.06!SEBOX;;chr2:100759037..100759058,-!p2@AFF3!0.61!3.06!AFF3;;chr14:100705335..100705360,+!p4@YY1!0.60!20.74!YY1;;chr13:41635029..41635044,-!p4@ELF1!0.60!7.05!ELF1;;chr12:48298765..48298783,-!p2@VDR!0.60!6.91!VDR;;chr4:87857433..87857472,+!p9@AFF1!0.60!5.98!AFF1;;chr9:94186085..94186096,-!p3@NFIL3!0.60!5.45!NFIL3;;chr19:35759824..35759891,+!p1@USF2!0.59!108.89!USF2;;chr7:99156393..99156433,+!p6@ZNF655!0.59!7.31!ZNF655;;chr8:72755987..72756002,-!p7@MSC!0.59!2.93!MSC;;chr12:56415246..56415286,+!p2@IKZF4!0.59!2.93!IKZF4;;chr11:13299319..13299424,+!p1@ARNTL!0.58!34.30!ARNTL;;chr19:18392236..18392248,-!p2@JUND!0.58!22.60!JUND;;chr1:221052840..221052875,+!p4@HLX!0.58!3.46!HLX;;chr10:64578528..64578542,-!p5@EGR2!0.58!2.79!EGR2;;chr7:150102756..150102772,+!p5@ZNF775!0.58!2.79!ZNF775;;chr1:212782094..212782109,+!p1@ATF3!0.57!93.20!ATF3;;chr16:68118689..68118733,+!p3@NFATC3!0.57!7.98!NFATC3;;chr18:52989031..52989079,-!p2@TCF4!0.57!7.45!TCF4;;chr4:185395590..185395627,-!p3@IRF2!0.57!3.59!IRF2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.56!66.74!LRRFIP1;;chr19:18392250..18392260,-!p4@JUND!0.56!9.97!JUND;;chr4:87928307..87928321,+!p8@AFF1!0.56!6.78!AFF1;;chr7:44924939..44924993,-!p2@PURB!0.56!5.85!PURB;;chr16:31141363..31141372,+!p4@KAT8!0.56!2.66!KAT8;;chr21:30672433..30672464,+!p6@BACH1!0.56!2.66!BACH1;;chr2:8822176..8822196,+!p1@ID2!0.55!452.19!ID2;;chr1:59249707..59249727,-!p1@JUN!0.55!135.48!JUN;;chr1:156470515..156470542,-!p2@MEF2D!0.55!16.49!MEF2D;;chrX:131623044..131623089,-!p1@MBNL3!0.55!12.90!MBNL3;;chr6:7108179..7108199,+!p4@RREB1!0.55!5.85!RREB1;;chr4:26323764..26323821,+!p15@RBPJ!0.55!2.53!RBPJ;;chr7:17338239..17338262,+!p2@AHR!0.54!23.00!AHR;;chr12:51566562..51566584,-!p2@TFCP2!0.54!8.24!TFCP2;;chr4:26322373..26322393,+!p4@RBPJ!0.54!3.99!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.54!3.99!MSC;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.53!138.14!TBX19;;chr14:64971461..64971542,+!p1@ZBTB1!0.53!61.56!ZBTB1;;chr7:7742814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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.71!506.84!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.67!470.67!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.25!174.97!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.19!155.03!TFEC;;chr6:391743..391759,+!p1@IRF4!2.14!135.88!IRF4;;chr5:71803177..71803255,-!p1@ZNF366!2.11!128.44!ZNF366;;chr12:54778471..54778528,-!p1@ZNF385A!2.10!125.11!ZNF385A;;chr6:1312325..1312340,+!p1@FOXQ1!2.06!181.49!FOXQ1;;chr19:33793430..33793447,-!p1@CEBPA!2.03!423.34!CEBPA;;chr10:64576105..64576133,-!p1@EGR2!1.96!180.29!EGR2;;chr16:85932760..85932775,+!p1@IRF8!1.74!54.25!IRF8;;chr3:12330560..12330579,+!p1@PPARG!1.71!57.97!PPARG;;chr11:47399996..47400014,-!p4@SPI1!1.68!47.33!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!1.66!96.53!NR4A3;;chr11:47400032..47400043,-!p5@SPI1!1.62!40.69!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.62!40.29!SPI1;;chr12:12764995..12765017,+!p3@CREBL2!1.55!47.73!CREBL2;;chr11:47279504..47279563,+!p1@NR1H3!1.44!59.43!NR1H3;;chr8:72756063..72756125,-!p1@MSC!1.44!52.65!MSC;;chr7:128577972..128578047,+!p1@IRF5!1.43!40.69!IRF5;;chr2:68592394..68592405,+!p2@PLEK!1.39!23.80!PLEK;;chr11:47400045..47400060,-!p6@SPI1!1.38!22.87!SPI1;;chr11:34642612..34642646,+!p1@EHF!1.38!22.74!EHF;;chr14:75988771..75988826,+!p1@BATF!1.32!26.46!BATF;;chr10:31288398..31288455,-!p2@ZNF438!1.30!21.94!ZNF438;;chr7:50343634..50343717,+!p2@IKZF1!1.30!19.01!IKZF1;;chr12:12764947..12764986,+!p2@CREBL2!1.27!33.77!CREBL2;;chr1:212873084..212873137,-!p2@BATF3!1.27!17.42!BATF3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.28!KDM5D;;chr16:79634624..79634642,-!p1@MAF!1.21!58.90!MAF;;chr19:50432132..50432217,+!p2@ATF5!1.21!18.35!ATF5;;chr1:158975744..158975769,+!p10@IFI16!1.21!15.16!IFI16;;chr22:38609611..38609624,+!p5@MAFF!1.21!15.16!MAFF;;chr16:31141328..31141350,+!p2@KAT8!1.19!14.36!KAT8;;chr22:38609570..38609585,+!p6@MAFF!1.16!13.43!MAFF;;chr7:50344289..50344323,+!p1@IKZF1!1.15!13.16!IKZF1;;chr9:102584278..102584285,+!p5@NR4A3!1.14!12.76!NR4A3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.13!12.37!SEBOX;;chr2:145277640..145277771,-!p1@ZEB2!1.12!161.28!ZEB2;;chr2:239148671..239148686,-!p1@HES6!1.09!41.48!HES6;;chr11:47399920..47399931,-!p7@SPI1!1.07!10.77!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.06!126.44!MAFB;;chr4:26324474..26324501,+!p16@RBPJ!1.06!10.50!RBPJ;;chr19:10416315..10416333,-!p1@ZGLP1!1.06!10.37!ZGLP1;;chr3:69788576..69788648,+!p1@MITF!1.05!55.31!MITF;;chr6:152011654..152011682,+!p1@ESR1!1.05!10.24!ESR1;;chr1:8484007..8484061,-!p13@RERE!1.04!12.76!RERE;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.71!TAL1;;chr22:38609587..38609607,+!p7@MAFF!1.01!9.31!MAFF;;chr16:88752861..88752884,-!p2@SNAI3!1.01!9.17!SNAI3;;chr9:102584159..102584174,+!p2@NR4A3!0.99!16.22!NR4A3;;chr6:44233252..44233296,-!p1@NFKBIE!0.98!86.42!NFKBIE;;chr16:67063211..67063240,+!p2@CBFB!0.98!41.62!CBFB;;chr4:26322267..26322334,+!p3@RBPJ!0.98!21.27!RBPJ;;chr4:26322673..26322684,+!p11@RBPJ!0.98!8.51!RBPJ;;chr3:187463179..187463201,-!p2@BCL6!0.97!35.50!BCL6;;chr15:90544532..90544563,+!p1@ZNF710!0.96!16.75!ZNF710;;chr10:31288370..31288393,-!p3@ZNF438!0.95!7.98!ZNF438;;chr16:79634595..79634620,-!p2@MAF!0.94!14.23!MAF;;chr12:54778351..54778378,-!p6@ZNF385A!0.93!7.58!ZNF385A;;chr3:69811858..69811881,+!p5@MITF!0.93!7.45!MITF;;chr9:102584128..102584144,+!p3@NR4A3!0.91!14.09!NR4A3;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.18!ZFY;;chr7:50344251..50344288,+!p3@IKZF1!0.91!7.05!IKZF1;;chr17:40440481..40440550,+!p1@STAT5A!0.88!49.59!STAT5A;;chr12:54694758..54694805,-!p1@NFE2!0.88!7.98!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.88!6.51!LYL1;;chr7:137620684..137620711,-!p4@CREB3L2!0.88!6.51!CREB3L2;;chr1:40367530..40367597,-!p1@MYCL1!0.86!11.70!MYCL1;;chr1:158985493..158985535,+!p4@IFI16!0.86!9.71!IFI16;;chr3:69811882..69811898,+!p6@MITF!0.85!6.12!MITF;;chr3:48282587..48282603,+!p1@ZNF589!0.83!27.12!ZNF589;;chr3:12392932..12392962,+!p8@PPARG!0.83!5.72!PPARG;;chr8:40755333..40755352,-!p1@ZMAT4!0.83!5.72!ZMAT4;;chr16:88752889..88752921,-!p1@SNAI3!0.81!6.51!SNAI3;;chr7:139762641..139762768,-!p1@PARP12!0.80!77.78!PARP12;;chr9:117150254..117150271,-!p1@AKNA!0.80!15.29!AKNA;;chr7:115670792..115670797,-!p2@TFEC!0.80!5.32!TFEC;;chr12:11802753..11802834,+!p2@ETV6!0.79!27.52!ETV6;;chr19:36391434..36391450,-!p1@NFKBID!0.79!10.77!NFKBID;;chr12:12764917..12764931,+!p4@CREBL2!0.79!6.91!CREBL2;;chr12:8186270..8186292,+!p3@FOXJ2!0.79!5.19!FOXJ2;;chr1:212873061..212873080,-!p4@BATF3!0.79!5.19!BATF3;;chr20:50159198..50159299,-!p1@NFATC2!0.78!7.58!NFATC2;;chr1:25256439..25256476,-!p3@RUNX3!0.78!5.05!RUNX3;;chr1:221053049..221053075,+!p3@HLX!0.77!8.91!HLX;;chr9:102584241..102584261,+!p4@NR4A3!0.77!7.98!NR4A3;;chr6:1312155..1312187,+!p2@FOXQ1!0.77!4.92!FOXQ1;;chr1:157108130..157108173,-!p1@ETV3!0.76!37.76!ETV3;;chr2:145277882..145277967,-!p3@ZEB2!0.76!8.64!ZEB2;;chr8:53373491..53373506,-!p4@ST18!0.76!4.79!ST18;;chr10:94449675..94449694,+!p2@HHEX!0.75!13.43!HHEX;;chr20:62462566..62462631,-!p1@ZBTB46!0.75!9.17!ZBTB46;;chr2:61108695..61108753,+!p1@REL!0.74!34.57!REL;;chr1:25256756..25256774,-!p1@RUNX3!0.74!9.04!RUNX3;;chr14:64971438..64971450,+!p2@ZBTB1!0.73!11.04!ZBTB1;;chr1:221052776..221052799,+!p1@HLX!0.73!8.38!HLX;;chr1:212873162..212873188,-!p3@BATF3!0.73!4.39!BATF3;;chr2:70142232..70142251,+!p1@MXD1!0.72!26.99!MXD1;;chr10:94449703..94449718,+!p1@HHEX!0.72!18.08!HHEX;;chr1:212873267..212873332,-!p1@BATF3!0.72!5.98!BATF3;;chr8:72756023..72756055,-!p6@MSC!0.72!5.45!MSC;;chrX:129244430..129244442,-!p5@ELF4!0.72!4.25!ELF4;;chr4:26323870..26323885,+!p13@RBPJ!0.72!4.25!RBPJ;;chr17:61919985..61920012,-!p3@SMARCD2!0.71!11.04!SMARCD2;;chr12:11802932..11802949,+!p3@ETV6!0.71!7.58!ETV6;;chr12:124873852..124873881,-!p3@NCOR2!0.70!27.12!NCOR2;;chr1:221052733..221052749,+!p2@HLX!0.70!5.45!HLX;;chr1:41157641..41157665,+!p7@NFYC!0.70!5.32!NFYC;;chr7:28725715..28725727,+!p3@CREB5!0.70!4.92!CREB5;;chr12:54694807..54694832,-!p3@NFE2!0.70!3.99!NFE2;;chr2:97202480..97202499,+!p1@ARID5A!0.69!45.60!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!0.69!28.19!ELF1;;chr21:36421535..36421610,-!p2@RUNX1!0.69!15.69!RUNX1;;chr19:13213662..13213686,-!p1@LYL1!0.69!6.12!LYL1;;chr19:13213704..13213726,-!p3@LYL1!0.69!5.32!LYL1;;chr14:75988831..75988847,+!p2@BATF!0.69!3.86!BATF;;chr7:139762438..139762447,-!p4@PARP12!0.69!3.86!PARP12;;chr6:34204973..34204990,+!p4@HMGA1!0.68!58.63!HMGA1;;chr16:79633894..79633954,-!p3@MAF!0.68!7.84!MAF;;chr18:52989081..52989117,-!p7@TCF4!0.68!6.25!TCF4;;chr7:17338266..17338282,+!p1@AHR!0.67!45.87!AHR;;chr4:87857474..87857489,+!p7@AFF1!0.67!6.91!AFF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.67!3.72!CREB3L2;;chr16:67198683..67198698,+!p2@HSF4!0.67!3.72!HSF4;;chr4:47916543..47916580,-!p2@NFXL1!0.66!13.30!NFXL1;;chr11:64764435..64764449,-!p1@BATF2!0.66!5.19!BATF2;;chr10:64018918..64018936,+!p2@ZNF365!0.66!3.59!ZNF365;;chr1:40367668..40367684,-!p2@MYCL1!0.66!3.59!MYCL1;;chrY:21906761..21906810,-!p2@KDM5D!0.66!3.59!KDM5D;;chr11:128563948..128564003,+!p1@FLI1!0.65!48.53!FLI1;;chr16:31885093..31885165,+!p1@ZNF267!0.64!60.10!ZNF267;;chr17:40440225..40440268,+!p3@STAT5A!0.64!4.52!STAT5A;;chr16:79634581..79634592,-!p4@MAF!0.64!3.32!MAF;;chr10:64575812..64575824,-!p4@EGR2!0.64!3.32!EGR2;;chr11:2292226..2292270,-!p1@ASCL2!0.64!3.32!ASCL2;;chr1:6479968..6479986,-!p1@HES2!0.64!3.32!HES2;;chr4:106068026..106068084,+!p1@TET2!0.63!34.97!TET2;;chr2:145275162..145275202,-!p2@ZEB2!0.63!22.34!ZEB2;;chr16:68119324..68119364,+!p1@NFATC3!0.63!17.15!NFATC3;;chr6:7108855..7108903,+!p5@RREB1!0.63!8.24!RREB1;;chr4:144435112..144435176,+!p3@SMARCA5!0.63!7.45!SMARCA5;;chr1:221052994..221053008,+!p6@HLX!0.63!3.99!HLX;;chrX:129244454..129244488,-!p1@ELF4!0.62!26.99!ELF4;;chr19:926001..926046,+!p1@ARID3A!0.62!12.63!ARID3A;;chr9:137217986..137218049,+!p3@RXRA!0.62!10.37!RXRA;;chr2:46524878..46524891,+!p3@EPAS1!0.62!6.12!EPAS1;;chr1:8926441..8926473,-!p10@ENO1!0.62!5.19!ENO1;;chr7:139762578..139762589,-!p2@PARP12!0.62!3.19!PARP12;;chr2:178129358..178129403,-!p5@NFE2L2!0.61!14.63!NFE2L2;;chr15:100106670..100106697,+!p4@MEF2A!0.61!5.45!MEF2A;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.61!3.06!SEBOX;;chr2:100759037..100759058,-!p2@AFF3!0.61!3.06!AFF3;;chr14:100705335..100705360,+!p4@YY1!0.60!20.74!YY1;;chr13:41635029..41635044,-!p4@ELF1!0.60!7.05!ELF1;;chr12:48298765..48298783,-!p2@VDR!0.60!6.91!VDR;;chr4:87857433..87857472,+!p9@AFF1!0.60!5.98!AFF1;;chr9:94186085..94186096,-!p3@NFIL3!0.60!5.45!NFIL3;;chr19:35759824..35759891,+!p1@USF2!0.59!108.89!USF2;;chr7:99156393..99156433,+!p6@ZNF655!0.59!7.31!ZNF655;;chr8:72755987..72756002,-!p7@MSC!0.59!2.93!MSC;;chr12:56415246..56415286,+!p2@IKZF4!0.59!2.93!IKZF4;;chr11:13299319..13299424,+!p1@ARNTL!0.58!34.30!ARNTL;;chr19:18392236..18392248,-!p2@JUND!0.58!22.60!JUND;;chr1:221052840..221052875,+!p4@HLX!0.58!3.46!HLX;;chr10:64578528..64578542,-!p5@EGR2!0.58!2.79!EGR2;;chr7:150102756..150102772,+!p5@ZNF775!0.58!2.79!ZNF775;;chr1:212782094..212782109,+!p1@ATF3!0.57!93.20!ATF3;;chr16:68118689..68118733,+!p3@NFATC3!0.57!7.98!NFATC3;;chr18:52989031..52989079,-!p2@TCF4!0.57!7.45!TCF4;;chr4:185395590..185395627,-!p3@IRF2!0.57!3.59!IRF2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.56!66.74!LRRFIP1;;chr19:18392250..18392260,-!p4@JUND!0.56!9.97!JUND;;chr4:87928307..87928321,+!p8@AFF1!0.56!6.78!AFF1;;chr7:44924939..44924993,-!p2@PURB!0.56!5.85!PURB;;chr16:31141363..31141372,+!p4@KAT8!0.56!2.66!KAT8;;chr21:30672433..30672464,+!p6@BACH1!0.56!2.66!BACH1;;chr2:8822176..8822196,+!p1@ID2!0.55!452.19!ID2;;chr1:59249707..59249727,-!p1@JUN!0.55!135.48!JUN;;chr1:156470515..156470542,-!p2@MEF2D!0.55!16.49!MEF2D;;chrX:131623044..131623089,-!p1@MBNL3!0.55!12.90!MBNL3;;chr6:7108179..7108199,+!p4@RREB1!0.55!5.85!RREB1;;chr4:26323764..26323821,+!p15@RBPJ!0.55!2.53!RBPJ;;chr7:17338239..17338262,+!p2@AHR!0.54!23.00!AHR;;chr12:51566562..51566584,-!p2@TFCP2!0.54!8.24!TFCP2;;chr4:26322373..26322393,+!p4@RBPJ!0.54!3.99!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.54!3.99!MSC;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.53!138.14!TBX19;;chr14:64971461..64971542,+!p1@ZBTB1!0.53!61.56!ZBTB1;;chr7:7742814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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor3.CNhs12000.11384-118B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor3.CNhs12000.11384-118B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor3.CNhs12000.11384-118B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor3.CNhs12000.11384-118B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor3.CNhs12000.11384-118B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11384-118B7 | |id=FF:11384-118B7 | ||
|is_a=EFO:0002091;;FF:0000044 | |is_a=EFO:0002091;;FF:0000044 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12000 | |library_id=CNhs12000 | ||
| | |library_id_phase_based=2:CNhs12000 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11384 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTGGCC.11384 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11384 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTGGCC.11384 | |||
|name=Dendritic Cells - monocyte immature derived, donor3 | |name=Dendritic Cells - monocyte immature derived, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12000,LSID837,release011,COMPLETED | |profile_hcage=CNhs12000,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 66: | Line 82: | ||
|rna_tube_id=118B7 | |rna_tube_id=118B7 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|rnaseq_library_id=SRhi10002.GTGGCC | |||
|sample_age=65 | |sample_age=65 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 89: | Line 106: | ||
|top_motifs=TLX2:2.41080619267;FOXP3:2.28708409989;SREBF1,2:1.81946799347;ESRRA:1.64666076189;SPI1:1.26950237975;IRF7:1.20592347616;ESR1:1.15988234441;STAT1,3:0.999881764101;SPIB:0.999486858799;NANOG{mouse}:0.988475758512;NR6A1:0.982627504848;ARID5B:0.979385615915;NKX2-2,8:0.893419190991;IKZF2:0.779137590521;PAX5:0.775693153857;ETS1,2:0.768546703555;ELF1,2,4:0.747716907612;EN1,2:0.708635538627;TFCP2:0.703737041248;NFE2L2:0.702810610616;FOXD3:0.679570497005;STAT2,4,6:0.676788465209;IRF1,2:0.655916484006;ALX1:0.648719379131;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.635976243657;MYOD1:0.578847308981;SPZ1:0.567990735529;STAT5{A,B}:0.561565456412;EP300:0.530405193212;ZBTB16:0.479656665817;RXRA_VDR{dimer}:0.461122919727;GLI1..3:0.431060799912;DMAP1_NCOR{1,2}_SMARC:0.429065040517;PPARG:0.422050608107;RORA:0.375135004256;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.344937594095;PAX2:0.341575242078;HES1:0.327401163864;AR:0.239684403317;GZF1:0.233293987423;NFIL3:0.206441798222;SMAD1..7,9:0.206257772901;NFE2L1:0.189266899813;HMGA1,2:0.174022654968;NKX3-2:0.156669225454;LMO2:0.15074459158;HLF:0.145186096968;HNF4A_NR2F1,2:0.137183562652;FOXQ1:0.128744745697;TGIF1:0.0957802024534;FOSL2:0.0667953299588;PAX6:0.0503645833249;ZNF148:0.0438913778832;XCPE1{core}:0.0388768111454;RUNX1..3:0.0371279615064;TOPORS:0.036008578546;VSX1,2:0.0126950983801;HOXA9_MEIS1:0.00860364134785;NFKB1_REL_RELA:0.00263844632853;MTF1:-0.0115532678842;TFAP4:-0.0271665093254;YY1:-0.0412890226981;FOXA2:-0.060918585613;UFEwm:-0.0620096985179;TEF:-0.0705001478553;MYFfamily:-0.0738322216883;FOXN1:-0.0773014028768;NKX6-1,2:-0.0775059791065;OCT4_SOX2{dimer}:-0.0790257076237;ATF2:-0.0825410947588;TFAP2{A,C}:-0.105122984636;NFE2:-0.107787017602;PAX8:-0.116707239842;EGR1..3:-0.132308314699;EBF1:-0.146357120452;CDX1,2,4:-0.161043993511;PAX1,9:-0.161571142148;ZBTB6:-0.171424899405;ONECUT1,2:-0.175541244621;FOXP1:-0.200364723944;SP1:-0.202081969488;GATA6:-0.209818707494;ZEB1:-0.210936210362;ATF5_CREB3:-0.212886737705;XBP1:-0.229758876039;NHLH1,2:-0.243318824371;HAND1,2:-0.245765635079;KLF4:-0.263645269709;PAX4:-0.291558615581;CUX2:-0.298812913083;ZFP161:-0.305440630704;HSF1,2:-0.309890694972;HIC1:-0.315476861396;MYB:-0.317466029844;GCM1,2:-0.317602905638;POU3F1..4:-0.328122478923;POU5F1:-0.350591927889;NKX2-3_NKX2-5:-0.36047231092;RFX2..5_RFXANK_RFXAP:-0.378348529845;FOS_FOS{B,L1}_JUN{B,D}:-0.394385385069;FOXO1,3,4:-0.398773475531;BACH2:-0.401089121935;HOX{A4,D4}:-0.402998231789;NR5A1,2:-0.40960799949;SRF:-0.429236929919;TFAP2B:-0.433365310772;TBP:-0.437331203675;SNAI1..3:-0.470094849825;FOX{D1,D2}:-0.472725832037;HNF1A:-0.480818433353;BPTF:-0.481866856187;PITX1..3:-0.482916707144;NR3C1:-0.485049377507;PRDM1:-0.490987319465;LHX3,4:-0.49315824057;HOX{A6,A7,B6,B7}:-0.498275641923;PRRX1,2:-0.509890191413;PDX1:-0.510708655422;TAL1_TCF{3,4,12}:-0.516752109684;GFI1B:-0.533356071861;CEBPA,B_DDIT3:-0.533894933401;MYBL2:-0.542709166969;MAFB:-0.543121012466;GTF2A1,2:-0.555575792351;MTE{core}:-0.570330976439;POU6F1:-0.577909859649;ELK1,4_GABP{A,B1}:-0.584433353178;ZNF143:-0.586031350302;MEF2{A,B,C,D}:-0.618458158202;EVI1:-0.627292223156;ATF4:-0.629977992477;HMX1:-0.644417402557;PAX3,7:-0.665316373738;HIF1A:-0.671312993022;FOX{F1,F2,J1}:-0.683074614877;TP53:-0.686514820115;CRX:-0.690741671904;REST:-0.692202253777;POU1F1:-0.694192968685;NRF1:-0.703098635744;SOX2:-0.707033835606;FOXM1:-0.708444127766;ZNF423:-0.719455644068;NR1H4:-0.724071816025;RREB1:-0.729102271079;AIRE:-0.732984016873;MAZ:-0.815808276742;AHR_ARNT_ARNT2:-0.84199681877;TEAD1:-0.863378144303;NFIX:-0.864728472009;NFY{A,B,C}:-0.865209352463;ALX4:-0.872550122273;GATA4:-0.882205618108;bHLH_family:-0.882375354301;FOX{I1,J2}:-0.922721125749;GTF2I:-0.945165394346;RXR{A,B,G}:-0.954493160673;MED-1{core}:-0.963056181842;T:-0.966091427633;ATF6:-0.971483757748;TLX1..3_NFIC{dimer}:-1.00400671191;HBP1_HMGB_SSRP1_UBTF:-1.00893922402;TFDP1:-1.03586373411;JUN:-1.07682848849;CDC5L:-1.09143126611;BREu{core}:-1.09408612269;GFI1:-1.1024859555;IKZF1:-1.12085750816;ADNP_IRX_SIX_ZHX:-1.14909514727;E2F1..5:-1.193344834;PATZ1:-1.22779027566;POU2F1..3:-1.26200567289;SOX{8,9,10}:-1.26891136429;ZIC1..3:-1.28344529338;NANOG:-1.30265345492;CREB1:-1.31700838799;SOX5:-1.3188165851;NKX3-1:-1.38483468966;SOX17:-1.41287134166;HOX{A5,B5}:-1.41908295773;NFATC1..3:-1.46904054388;ZNF384:-1.52605314112;TBX4,5:-1.54370925084;ZNF238:-1.59402025182;FOXL1:-1.62369895587;MZF1:-1.6375563285;RFX1:-1.6409906535;PBX1:-1.66751691547;LEF1_TCF7_TCF7L1,2:-1.70981074177;DBP:-1.80998328773;RBPJ:-2.14288804547;NKX2-1,4:-2.33859231174 | |top_motifs=TLX2:2.41080619267;FOXP3:2.28708409989;SREBF1,2:1.81946799347;ESRRA:1.64666076189;SPI1:1.26950237975;IRF7:1.20592347616;ESR1:1.15988234441;STAT1,3:0.999881764101;SPIB:0.999486858799;NANOG{mouse}:0.988475758512;NR6A1:0.982627504848;ARID5B:0.979385615915;NKX2-2,8:0.893419190991;IKZF2:0.779137590521;PAX5:0.775693153857;ETS1,2:0.768546703555;ELF1,2,4:0.747716907612;EN1,2:0.708635538627;TFCP2:0.703737041248;NFE2L2:0.702810610616;FOXD3:0.679570497005;STAT2,4,6:0.676788465209;IRF1,2:0.655916484006;ALX1:0.648719379131;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.635976243657;MYOD1:0.578847308981;SPZ1:0.567990735529;STAT5{A,B}:0.561565456412;EP300:0.530405193212;ZBTB16:0.479656665817;RXRA_VDR{dimer}:0.461122919727;GLI1..3:0.431060799912;DMAP1_NCOR{1,2}_SMARC:0.429065040517;PPARG:0.422050608107;RORA:0.375135004256;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.344937594095;PAX2:0.341575242078;HES1:0.327401163864;AR:0.239684403317;GZF1:0.233293987423;NFIL3:0.206441798222;SMAD1..7,9:0.206257772901;NFE2L1:0.189266899813;HMGA1,2:0.174022654968;NKX3-2:0.156669225454;LMO2:0.15074459158;HLF:0.145186096968;HNF4A_NR2F1,2:0.137183562652;FOXQ1:0.128744745697;TGIF1:0.0957802024534;FOSL2:0.0667953299588;PAX6:0.0503645833249;ZNF148:0.0438913778832;XCPE1{core}:0.0388768111454;RUNX1..3:0.0371279615064;TOPORS:0.036008578546;VSX1,2:0.0126950983801;HOXA9_MEIS1:0.00860364134785;NFKB1_REL_RELA:0.00263844632853;MTF1:-0.0115532678842;TFAP4:-0.0271665093254;YY1:-0.0412890226981;FOXA2:-0.060918585613;UFEwm:-0.0620096985179;TEF:-0.0705001478553;MYFfamily:-0.0738322216883;FOXN1:-0.0773014028768;NKX6-1,2:-0.0775059791065;OCT4_SOX2{dimer}:-0.0790257076237;ATF2:-0.0825410947588;TFAP2{A,C}:-0.105122984636;NFE2:-0.107787017602;PAX8:-0.116707239842;EGR1..3:-0.132308314699;EBF1:-0.146357120452;CDX1,2,4:-0.161043993511;PAX1,9:-0.161571142148;ZBTB6:-0.171424899405;ONECUT1,2:-0.175541244621;FOXP1:-0.200364723944;SP1:-0.202081969488;GATA6:-0.209818707494;ZEB1:-0.210936210362;ATF5_CREB3:-0.212886737705;XBP1:-0.229758876039;NHLH1,2:-0.243318824371;HAND1,2:-0.245765635079;KLF4:-0.263645269709;PAX4:-0.291558615581;CUX2:-0.298812913083;ZFP161:-0.305440630704;HSF1,2:-0.309890694972;HIC1:-0.315476861396;MYB:-0.317466029844;GCM1,2:-0.317602905638;POU3F1..4:-0.328122478923;POU5F1:-0.350591927889;NKX2-3_NKX2-5:-0.36047231092;RFX2..5_RFXANK_RFXAP:-0.378348529845;FOS_FOS{B,L1}_JUN{B,D}:-0.394385385069;FOXO1,3,4:-0.398773475531;BACH2:-0.401089121935;HOX{A4,D4}:-0.402998231789;NR5A1,2:-0.40960799949;SRF:-0.429236929919;TFAP2B:-0.433365310772;TBP:-0.437331203675;SNAI1..3:-0.470094849825;FOX{D1,D2}:-0.472725832037;HNF1A:-0.480818433353;BPTF:-0.481866856187;PITX1..3:-0.482916707144;NR3C1:-0.485049377507;PRDM1:-0.490987319465;LHX3,4:-0.49315824057;HOX{A6,A7,B6,B7}:-0.498275641923;PRRX1,2:-0.509890191413;PDX1:-0.510708655422;TAL1_TCF{3,4,12}:-0.516752109684;GFI1B:-0.533356071861;CEBPA,B_DDIT3:-0.533894933401;MYBL2:-0.542709166969;MAFB:-0.543121012466;GTF2A1,2:-0.555575792351;MTE{core}:-0.570330976439;POU6F1:-0.577909859649;ELK1,4_GABP{A,B1}:-0.584433353178;ZNF143:-0.586031350302;MEF2{A,B,C,D}:-0.618458158202;EVI1:-0.627292223156;ATF4:-0.629977992477;HMX1:-0.644417402557;PAX3,7:-0.665316373738;HIF1A:-0.671312993022;FOX{F1,F2,J1}:-0.683074614877;TP53:-0.686514820115;CRX:-0.690741671904;REST:-0.692202253777;POU1F1:-0.694192968685;NRF1:-0.703098635744;SOX2:-0.707033835606;FOXM1:-0.708444127766;ZNF423:-0.719455644068;NR1H4:-0.724071816025;RREB1:-0.729102271079;AIRE:-0.732984016873;MAZ:-0.815808276742;AHR_ARNT_ARNT2:-0.84199681877;TEAD1:-0.863378144303;NFIX:-0.864728472009;NFY{A,B,C}:-0.865209352463;ALX4:-0.872550122273;GATA4:-0.882205618108;bHLH_family:-0.882375354301;FOX{I1,J2}:-0.922721125749;GTF2I:-0.945165394346;RXR{A,B,G}:-0.954493160673;MED-1{core}:-0.963056181842;T:-0.966091427633;ATF6:-0.971483757748;TLX1..3_NFIC{dimer}:-1.00400671191;HBP1_HMGB_SSRP1_UBTF:-1.00893922402;TFDP1:-1.03586373411;JUN:-1.07682848849;CDC5L:-1.09143126611;BREu{core}:-1.09408612269;GFI1:-1.1024859555;IKZF1:-1.12085750816;ADNP_IRX_SIX_ZHX:-1.14909514727;E2F1..5:-1.193344834;PATZ1:-1.22779027566;POU2F1..3:-1.26200567289;SOX{8,9,10}:-1.26891136429;ZIC1..3:-1.28344529338;NANOG:-1.30265345492;CREB1:-1.31700838799;SOX5:-1.3188165851;NKX3-1:-1.38483468966;SOX17:-1.41287134166;HOX{A5,B5}:-1.41908295773;NFATC1..3:-1.46904054388;ZNF384:-1.52605314112;TBX4,5:-1.54370925084;ZNF238:-1.59402025182;FOXL1:-1.62369895587;MZF1:-1.6375563285;RFX1:-1.6409906535;PBX1:-1.66751691547;LEF1_TCF7_TCF7L1,2:-1.70981074177;DBP:-1.80998328773;RBPJ:-2.14288804547;NKX2-1,4:-2.33859231174 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11384-118B7;search_select_hide=table117:FF:11384-118B7 | |||
}} | }} |
Latest revision as of 17:56, 4 June 2020
Name: | Dendritic Cells - monocyte immature derived, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12000 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12000
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12000
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0319 |
10 | 10 | 0.035 |
100 | 100 | 0.76 |
101 | 101 | 0.162 |
102 | 102 | 0.541 |
103 | 103 | 0.104 |
104 | 104 | 0.244 |
105 | 105 | 0.649 |
106 | 106 | 0.00737 |
107 | 107 | 0.176 |
108 | 108 | 0.849 |
109 | 109 | 0.0178 |
11 | 11 | 0.0448 |
110 | 110 | 0.166 |
111 | 111 | 0.008 |
112 | 112 | 0.0202 |
113 | 113 | 0.609 |
114 | 114 | 0.00333 |
115 | 115 | 0.67 |
116 | 116 | 0.354 |
117 | 117 | 0.0426 |
118 | 118 | 0.348 |
119 | 119 | 0.0193 |
12 | 12 | 0.403 |
120 | 120 | 0.189 |
121 | 121 | 0.84 |
122 | 122 | 0.397 |
123 | 123 | 0.225 |
124 | 124 | 0.545 |
125 | 125 | 0.337 |
126 | 126 | 0.393 |
127 | 127 | 0.0939 |
128 | 128 | 0.0258 |
129 | 129 | 0.431 |
13 | 13 | 0.0936 |
130 | 130 | 0.484 |
131 | 131 | 0.703 |
132 | 132 | 0.875 |
133 | 133 | 0.885 |
134 | 134 | 0.669 |
135 | 135 | 0.0126 |
136 | 136 | 0.195 |
137 | 137 | 0.114 |
138 | 138 | 0.336 |
139 | 139 | 0.0412 |
14 | 14 | 0.273 |
140 | 140 | 0.123 |
141 | 141 | 0.982 |
142 | 142 | 0.464 |
143 | 143 | 0.108 |
144 | 144 | 0.432 |
145 | 145 | 0.395 |
146 | 146 | 0.921 |
147 | 147 | 0.35 |
148 | 148 | 0.0097 |
149 | 149 | 0.19 |
15 | 15 | 0.211 |
150 | 150 | 0.482 |
151 | 151 | 0.546 |
152 | 152 | 0.0432 |
153 | 153 | 0.524 |
154 | 154 | 0.821 |
155 | 155 | 0.189 |
156 | 156 | 0.766 |
157 | 157 | 0.727 |
158 | 158 | 0.892 |
159 | 159 | 0.481 |
16 | 16 | 0.203 |
160 | 160 | 0.366 |
161 | 161 | 0.254 |
162 | 162 | 0.87 |
163 | 163 | 0.408 |
164 | 164 | 0.06 |
165 | 165 | 0.216 |
166 | 166 | 0.555 |
167 | 167 | 0.667 |
168 | 168 | 0.911 |
169 | 169 | 0.00329 |
17 | 17 | 0.145 |
18 | 18 | 0.287 |
19 | 19 | 0.131 |
2 | 2 | 0.798 |
20 | 20 | 0.792 |
21 | 21 | 0.163 |
22 | 22 | 0.168 |
23 | 23 | 0.272 |
24 | 24 | 0.0261 |
25 | 25 | 0.73 |
26 | 26 | 0.0747 |
27 | 27 | 0.181 |
28 | 28 | 0.628 |
29 | 29 | 0.293 |
3 | 3 | 0.0215 |
30 | 30 | 0.92 |
31 | 31 | 0.589 |
32 | 32 | 0.73 |
33 | 33 | 0.324 |
34 | 34 | 0.418 |
35 | 35 | 0.677 |
36 | 36 | 0.216 |
37 | 37 | 0.0687 |
38 | 38 | 0.18 |
39 | 39 | 0.673 |
4 | 4 | 0.89 |
40 | 40 | 0.128 |
41 | 41 | 0.597 |
42 | 42 | 0.483 |
43 | 43 | 0.0676 |
44 | 44 | 2.34117e-4 |
45 | 45 | 0.819 |
46 | 46 | 0.127 |
47 | 47 | 0.151 |
48 | 48 | 0.185 |
49 | 49 | 0.179 |
5 | 5 | 0.596 |
50 | 50 | 0.85 |
51 | 51 | 0.49 |
52 | 52 | 0.187 |
53 | 53 | 0.515 |
54 | 54 | 0.257 |
55 | 55 | 0.0682 |
56 | 56 | 0.701 |
57 | 57 | 0.431 |
58 | 58 | 0.205 |
59 | 59 | 0.0787 |
6 | 6 | 0.788 |
60 | 60 | 0.0819 |
61 | 61 | 0.277 |
62 | 62 | 0.143 |
63 | 63 | 0.322 |
64 | 64 | 0.261 |
65 | 65 | 0.0859 |
66 | 66 | 0.693 |
67 | 67 | 0.22 |
68 | 68 | 0.889 |
69 | 69 | 0.332 |
7 | 7 | 0.288 |
70 | 70 | 0.0474 |
71 | 71 | 0.0602 |
72 | 72 | 0.257 |
73 | 73 | 0.0175 |
74 | 74 | 0.486 |
75 | 75 | 0.0501 |
76 | 76 | 0.387 |
77 | 77 | 0.106 |
78 | 78 | 0.0226 |
79 | 79 | 0.109 |
8 | 8 | 0.0602 |
80 | 80 | 0.57 |
81 | 81 | 0.175 |
82 | 82 | 0.0923 |
83 | 83 | 0.966 |
84 | 84 | 0.378 |
85 | 85 | 0.0198 |
86 | 86 | 0.0403 |
87 | 87 | 0.0307 |
88 | 88 | 0.216 |
89 | 89 | 0.0646 |
9 | 9 | 0.349 |
90 | 90 | 0.0837 |
91 | 91 | 0.72 |
92 | 92 | 0.272 |
93 | 93 | 0.798 |
94 | 94 | 0.0835 |
95 | 95 | 0.135 |
96 | 96 | 0.153 |
97 | 97 | 0.917 |
98 | 98 | 0.124 |
99 | 99 | 0.752 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12000
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000044 human monocyte immature derived dendritic cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)