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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004801
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004801
|accession_numbers=CAGE;DRX008329;DRR009201;DRZ000626;DRZ002011;DRZ011976;DRZ013361
|accession_numbers_RNASeq=sRNA-Seq;DRX037106;DRR041472;DRZ007114
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.27!208.56!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.12!129.58!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.92!82.04!HES2;;chr1:209979411..209979433,-!p2@IRF6!1.88!73.99!IRF6;;chr12:54785074..54785122,-!p2@ZNF385A!1.82!98.53!ZNF385A;;chr15:83953397..83953425,-!p1@BNC1!1.75!62.49!BNC1;;chr9:124991204..124991246,-!p1@LHX6!1.70!48.69!LHX6;;chr12:54785054..54785072,-!p4@ZNF385A!1.66!49.84!ZNF385A;;chr5:2751762..2751784,-!p1@IRX2!1.65!43.71!IRX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.61!39.87!TFCP2L1;;chr3:189507432..189507459,+!p1@TP63!1.57!36.04!TP63;;chr3:111314186..111314204,-!p1@ZBED2!1.54!33.74!ZBED2;;chr2:19558373..19558392,-!p1@OSR1!1.52!86.26!OSR1;;chr6:10415276..10415341,-!p2@TFAP2A!1.52!39.11!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!1.47!243.06!PPP1R13L;;chr5:3595934..3595957,+!p2@IRX1!1.47!28.37!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.46!27.60!IRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.45!46.77!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!32.20!TFAP2C;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.30!ZBED1;;chr17:7492684..7492778,-!p2@SOX15!1.38!47.92!SOX15;;chr11:65667884..65667895,-!p2@FOSL1!1.32!74.76!FOSL1;;chr6:10412600..10412637,-!p1@TFAP2A!1.30!31.44!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.02!IRX1;;chr17:70117153..70117174,+!p1@SOX9!1.21!155.65!SOX9;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.64!DRAP1;;chr6:10415484..10415508,-!p3@TFAP2A!1.19!14.57!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.13!35.27!EPAS1;;chr8:10588010..10588030,-!p1@SOX7!1.11!11.88!SOX7;;chr5:2751785..2751808,-!p2@IRX2!1.10!11.50!IRX2;;chr11:47236584..47236679,+!p1@DDB2!1.08!120.38!DDB2;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.92!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.08!29.52!HMGA2;;chr5:1887052..1887065,-!p2@IRX4!1.08!11.12!IRX4;;chr8:102504651..102504683,+!p1@GRHL2!1.08!11.12!GRHL2;;chr12:54332608..54332636,+!p1@HOXC13!1.07!10.73!HOXC13;;chr17:41622925..41622976,-!p3@ETV4!1.06!15.72!ETV4;;chr5:1887070..1887114,-!p1@IRX4!1.04!9.97!IRX4;;chr1:209979449..209979460,-!p3@IRF6!1.04!9.97!IRF6;;chr11:120107344..120107351,+!p1@POU2F3!1.02!11.50!POU2F3;;chr11:65667846..65667868,-!p1@FOSL1!1.01!246.52!FOSL1;;chr9:129376201..129376225,+!p1@LMX1B!1.01!9.20!LMX1B;;chr5:72744594..72744609,-!p1@FOXD1!1.00!42.17!FOXD1;;chr17:41622765..41622821,-!p2@ETV4!0.97!13.04!ETV4;;chr6:10419768..10419819,-!p6@TFAP2A!0.97!8.43!TFAP2A;;chr16:54964740..54964789,+!p1@IRX5!0.96!11.88!IRX5;;chr2:239756671..239756732,+!p1@TWIST2!0.94!25.30!TWIST2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.50!HMGA2;;chr12:48298765..48298783,-!p2@VDR!0.93!16.10!VDR;;chr17:41623667..41623682,-!p8@ETV4!0.93!8.05!ETV4;;chr17:41622731..41622764,-!p5@ETV4!0.92!7.28!ETV4;;chr20:55205825..55205847,+!p2@TFAP2C!0.92!7.28!TFAP2C;;chr14:21566731..21566836,-!p1@ZNF219!0.91!78.98!ZNF219;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.88!ETV4;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.88!FOXD1;;chr8:128748308..128748324,+!p2@MYC!0.89!197.44!MYC;;chr12:53625966..53626012,-!p2@RARG!0.89!18.40!RARG;;chr13:73633131..73633149,+!p1@KLF5!0.87!72.08!KLF5;;chr3:52001448..52001478,-!p2@PCBP4!0.86!91.25!PCBP4;;chr11:65687362..65687436,+!p3@DRAP1!0.86!29.90!DRAP1;;chr6:106534192..106534224,+!p1@PRDM1!0.85!18.02!PRDM1;;chr11:65554528..65554546,+!p1@OVOL1!0.85!6.13!OVOL1;;chr15:83953373..83953386,-!p2@BNC1!0.85!6.13!BNC1;;chr8:49833978..49833996,-!p1@SNAI2!0.84!130.35!SNAI2;;chr12:48298785..48298828,-!p1@VDR!0.83!32.59!VDR;;chr5:172662197..172662216,-!p1@NKX2-5!0.83!5.75!NKX2-5;;chr20:18038521..18038571,-!p1@OVOL2!0.83!5.75!OVOL2;;chr19:13135582..13135600,+!p3@NFIX!0.83!5.75!NFIX;;chr12:2986275..2986363,-!p1@FOXM1!0.81!59.42!FOXM1;;chr10:8095593..8095625,+!p3@GATA3!0.81!6.52!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.80!SNAI2;;chr11:65668011..65668020,-!p3@FOSL1!0.80!5.37!FOSL1;;chr20:55205791..55205817,+!p3@TFAP2C!0.80!5.37!TFAP2C;;chr17:45928443..45928473,-!p2@SP6!0.80!5.37!SP6;;chr17:41623259..41623278,-!p7@ETV4!0.79!6.13!ETV4;;chr9:129376233..129376251,+!p2@LMX1B!0.78!4.98!LMX1B;;chr2:43453734..43453751,-!p1@ZFP36L2!0.75!549.00!ZFP36L2;;chr18:45935720..45935772,-!p1@ZBTB7C!0.75!4.60!ZBTB7C;;chr12:66218598..66218645,+!p2@HMGA2!0.74!22.62!HMGA2;;chr18:3449720..3449749,+!p2@TGIF1!0.74!10.35!TGIF1;;chr20:62680984..62680999,-!p1@SOX18!0.74!6.13!SOX18;;chr10:8096631..8096660,+!p1@GATA3!0.73!5.37!GATA3;;chr20:42295745..42295765,+!p1@MYBL2!0.72!78.59!MYBL2;;chr8:145669791..145669834,-!p1@TONSL!0.72!13.42!TONSL;;chr12:3068466..3068495,+!p3@TEAD4!0.72!9.97!TEAD4;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.82!HMGA2;;chr19:13134772..13134822,+!p2@NFIX!0.72!6.52!NFIX;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.22!ZNF668;;chr12:54332652..54332671,+!p2@HOXC13!0.72!4.22!HOXC13;;chr12:54447637..54447659,+!p4@HOXC4!0.72!4.22!HOXC4;;chr12:125002827..125002855,-!p5@NCOR2!0.71!6.13!NCOR2;;chr17:41622834..41622883,-!p6@ETV4!0.70!4.98!ETV4;;chr2:101436564..101436647,+!p1@NPAS2!0.69!91.63!NPAS2;;chr10:8096772..8096787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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg38.nobarcode.ctss.bed.gz
|id=FF:11422-118F9
|id=FF:11422-118F9
|is_a=EFO:0002091;;FF:0000088
|is_a=EFO:0002091;;FF:0000088
|is_obsolete=
|is_obsolete=
|library_id=CNhs12032
|library_id_phase_based=2:CNhs12032
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11422
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTTTCG.11422
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11422
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTTTCG.11422
|name=Mammary Epithelial Cell, donor3
|name=Mammary Epithelial Cell, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 64:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12032,LSID837,release011,COMPLETED
|profile_hcage=CNhs12032,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
|profile_srnaseq=SRhi10007,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_cell_line=
Line 83: Line 105:
|top_motifs=TP53:3.17321670603;PPARG:2.7538210892;VSX1,2:1.92012181576;XCPE1{core}:1.77002646719;TBX4,5:1.65679412379;ZEB1:1.57518738056;ONECUT1,2:1.27160448091;SP1:1.25798947028;GTF2A1,2:1.24191586003;bHLH_family:1.1657678316;SNAI1..3:1.16540911698;TEAD1:1.13003067209;TBP:1.12947030289;ZNF148:1.12834935457;STAT5{A,B}:1.04897292665;NR5A1,2:1.04019230707;RXRA_VDR{dimer}:0.993072002937;PAX1,9:0.97857285038;GLI1..3:0.943295728217;POU2F1..3:0.940511461296;TFAP2{A,C}:0.905629558028;GFI1:0.89431134627;TFDP1:0.884554674138;POU1F1:0.829555889374;MYOD1:0.766890098509;NFIL3:0.745326228587;FOXM1:0.728767216878;ADNP_IRX_SIX_ZHX:0.668226550192;HOX{A5,B5}:0.639995968205;CDC5L:0.625987551478;FOS_FOS{B,L1}_JUN{B,D}:0.619830187965;AR:0.605040152884;ZNF238:0.55656790097;POU3F1..4:0.54118606162;ZBTB6:0.540013435483;EBF1:0.507580965588;PAX8:0.495114590816;REST:0.482181706102;TLX1..3_NFIC{dimer}:0.479521055136;BACH2:0.466988125899;LEF1_TCF7_TCF7L1,2:0.456426735518;IKZF1:0.446555727069;ZNF423:0.436116376908;MTF1:0.425529780141;TFCP2:0.388702551739;NFY{A,B,C}:0.387081857697;ZIC1..3:0.384450593225;NKX2-3_NKX2-5:0.377621742933;LMO2:0.376869100395;NR6A1:0.365696129921;E2F1..5:0.310909869667;HIC1:0.301107384362;GCM1,2:0.293634339902;UFEwm:0.283661949743;MAZ:0.276396571026;TFAP4:0.26849964331;TFAP2B:0.262003698727;NANOG:0.261288835995;POU6F1:0.257646993859;NKX2-2,8:0.236679250564;ARID5B:0.222388007853;FOSL2:0.216083865142;SOX17:0.195946539537;HMX1:0.192174676535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190824957479;SOX{8,9,10}:0.190237832758;ZNF143:0.159331268657;MYB:0.147389591144;OCT4_SOX2{dimer}:0.115791672419;RXR{A,B,G}:0.108109916821;NR3C1:0.0869342213959;EGR1..3:0.0669732222933;FOXQ1:0.0587975193726;CEBPA,B_DDIT3:0.0465276753956;HAND1,2:0.0388583805512;GATA6:0.0234878759973;HES1:0.00521066359803;NR1H4:0.000500995190496;HNF4A_NR2F1,2:-0.00546425565498;TEF:-0.0108571261227;EN1,2:-0.019190991195;GFI1B:-0.0265978641027;NFE2:-0.0401034711234;PBX1:-0.0458437478709;SRF:-0.0505132888727;NKX3-2:-0.0713678081646;SPZ1:-0.0797562705896;FOXL1:-0.125733934954;HLF:-0.126418102419;EP300:-0.127679198334;NFIX:-0.150499058399;ESR1:-0.160734333948;GTF2I:-0.201254085742;RREB1:-0.219645750999;YY1:-0.223005672923;HNF1A:-0.235640516219;ETS1,2:-0.252163593946;NKX2-1,4:-0.265349954206;PAX2:-0.26542390277;BREu{core}:-0.268857346586;GZF1:-0.287269909579;NFKB1_REL_RELA:-0.287454278004;MED-1{core}:-0.288246571684;KLF4:-0.298322146193;ELK1,4_GABP{A,B1}:-0.301061294429;ZFP161:-0.307552659139;SOX2:-0.314876322113;POU5F1:-0.315783126955;SMAD1..7,9:-0.321536442296;NRF1:-0.335527667395;LHX3,4:-0.338930987753;PAX5:-0.352334506578;HOX{A4,D4}:-0.356296276078;NFE2L2:-0.377702776678;TOPORS:-0.394524702749;SPIB:-0.403911311062;MTE{core}:-0.409930486018;NFE2L1:-0.424699539324;SPI1:-0.435693971026;RUNX1..3:-0.439652642493;HIF1A:-0.472701166103;NFATC1..3:-0.486183398051;ESRRA:-0.493797743056;PITX1..3:-0.49620994334;MEF2{A,B,C,D}:-0.501696977908;STAT2,4,6:-0.55180976061;NHLH1,2:-0.569956530967;JUN:-0.571886355565;IRF7:-0.57320323464;CUX2:-0.578996372212;HOXA9_MEIS1:-0.587481007547;MYBL2:-0.59042396485;FOXA2:-0.596954788636;T:-0.597298149343;ALX1:-0.597824738532;FOX{F1,F2,J1}:-0.60142733809;AIRE:-0.615799966725;RFX1:-0.627135189697;HSF1,2:-0.637156157619;ATF5_CREB3:-0.643366716023;DBP:-0.646279824729;ATF2:-0.663690053469;ELF1,2,4:-0.665457888634;PRDM1:-0.701381886705;CRX:-0.70440863092;FOXO1,3,4:-0.716646046938;PDX1:-0.736731333972;MYFfamily:-0.757334327939;TAL1_TCF{3,4,12}:-0.781301422782;RBPJ:-0.784734750575;SOX5:-0.815487086202;PRRX1,2:-0.825978268668;TLX2:-0.84225789749;PAX3,7:-0.859000956262;HOX{A6,A7,B6,B7}:-0.876938670115;PATZ1:-0.883899278279;CREB1:-0.900969591554;PAX4:-0.936018389163;ALX4:-0.937715728238;RORA:-0.937882487605;FOX{I1,J2}:-0.965148146814;SREBF1,2:-0.968873494806;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976084406026;FOXN1:-0.977286684987;MZF1:-1.02061547852;EVI1:-1.02784741582;FOXP3:-1.04710193702;DMAP1_NCOR{1,2}_SMARC:-1.06031558034;TGIF1:-1.06998678408;NKX3-1:-1.07472289335;FOX{D1,D2}:-1.08742450344;XBP1:-1.09313163276;GATA4:-1.13273679035;AHR_ARNT_ARNT2:-1.13865534259;HMGA1,2:-1.17578650724;MAFB:-1.22028540653;ATF6:-1.22588891542;ZBTB16:-1.22897281621;NANOG{mouse}:-1.23520634286;IRF1,2:-1.32379435204;PAX6:-1.35770880914;HBP1_HMGB_SSRP1_UBTF:-1.36816789149;BPTF:-1.39743808619;ATF4:-1.39878990329;RFX2..5_RFXANK_RFXAP:-1.39880578389;FOXP1:-1.42837770836;CDX1,2,4:-1.72212087911;FOXD3:-1.77049209475;NKX6-1,2:-1.78132302756;STAT1,3:-1.81549711908;ZNF384:-1.82546830134;IKZF2:-1.83299330064
|top_motifs=TP53:3.17321670603;PPARG:2.7538210892;VSX1,2:1.92012181576;XCPE1{core}:1.77002646719;TBX4,5:1.65679412379;ZEB1:1.57518738056;ONECUT1,2:1.27160448091;SP1:1.25798947028;GTF2A1,2:1.24191586003;bHLH_family:1.1657678316;SNAI1..3:1.16540911698;TEAD1:1.13003067209;TBP:1.12947030289;ZNF148:1.12834935457;STAT5{A,B}:1.04897292665;NR5A1,2:1.04019230707;RXRA_VDR{dimer}:0.993072002937;PAX1,9:0.97857285038;GLI1..3:0.943295728217;POU2F1..3:0.940511461296;TFAP2{A,C}:0.905629558028;GFI1:0.89431134627;TFDP1:0.884554674138;POU1F1:0.829555889374;MYOD1:0.766890098509;NFIL3:0.745326228587;FOXM1:0.728767216878;ADNP_IRX_SIX_ZHX:0.668226550192;HOX{A5,B5}:0.639995968205;CDC5L:0.625987551478;FOS_FOS{B,L1}_JUN{B,D}:0.619830187965;AR:0.605040152884;ZNF238:0.55656790097;POU3F1..4:0.54118606162;ZBTB6:0.540013435483;EBF1:0.507580965588;PAX8:0.495114590816;REST:0.482181706102;TLX1..3_NFIC{dimer}:0.479521055136;BACH2:0.466988125899;LEF1_TCF7_TCF7L1,2:0.456426735518;IKZF1:0.446555727069;ZNF423:0.436116376908;MTF1:0.425529780141;TFCP2:0.388702551739;NFY{A,B,C}:0.387081857697;ZIC1..3:0.384450593225;NKX2-3_NKX2-5:0.377621742933;LMO2:0.376869100395;NR6A1:0.365696129921;E2F1..5:0.310909869667;HIC1:0.301107384362;GCM1,2:0.293634339902;UFEwm:0.283661949743;MAZ:0.276396571026;TFAP4:0.26849964331;TFAP2B:0.262003698727;NANOG:0.261288835995;POU6F1:0.257646993859;NKX2-2,8:0.236679250564;ARID5B:0.222388007853;FOSL2:0.216083865142;SOX17:0.195946539537;HMX1:0.192174676535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190824957479;SOX{8,9,10}:0.190237832758;ZNF143:0.159331268657;MYB:0.147389591144;OCT4_SOX2{dimer}:0.115791672419;RXR{A,B,G}:0.108109916821;NR3C1:0.0869342213959;EGR1..3:0.0669732222933;FOXQ1:0.0587975193726;CEBPA,B_DDIT3:0.0465276753956;HAND1,2:0.0388583805512;GATA6:0.0234878759973;HES1:0.00521066359803;NR1H4:0.000500995190496;HNF4A_NR2F1,2:-0.00546425565498;TEF:-0.0108571261227;EN1,2:-0.019190991195;GFI1B:-0.0265978641027;NFE2:-0.0401034711234;PBX1:-0.0458437478709;SRF:-0.0505132888727;NKX3-2:-0.0713678081646;SPZ1:-0.0797562705896;FOXL1:-0.125733934954;HLF:-0.126418102419;EP300:-0.127679198334;NFIX:-0.150499058399;ESR1:-0.160734333948;GTF2I:-0.201254085742;RREB1:-0.219645750999;YY1:-0.223005672923;HNF1A:-0.235640516219;ETS1,2:-0.252163593946;NKX2-1,4:-0.265349954206;PAX2:-0.26542390277;BREu{core}:-0.268857346586;GZF1:-0.287269909579;NFKB1_REL_RELA:-0.287454278004;MED-1{core}:-0.288246571684;KLF4:-0.298322146193;ELK1,4_GABP{A,B1}:-0.301061294429;ZFP161:-0.307552659139;SOX2:-0.314876322113;POU5F1:-0.315783126955;SMAD1..7,9:-0.321536442296;NRF1:-0.335527667395;LHX3,4:-0.338930987753;PAX5:-0.352334506578;HOX{A4,D4}:-0.356296276078;NFE2L2:-0.377702776678;TOPORS:-0.394524702749;SPIB:-0.403911311062;MTE{core}:-0.409930486018;NFE2L1:-0.424699539324;SPI1:-0.435693971026;RUNX1..3:-0.439652642493;HIF1A:-0.472701166103;NFATC1..3:-0.486183398051;ESRRA:-0.493797743056;PITX1..3:-0.49620994334;MEF2{A,B,C,D}:-0.501696977908;STAT2,4,6:-0.55180976061;NHLH1,2:-0.569956530967;JUN:-0.571886355565;IRF7:-0.57320323464;CUX2:-0.578996372212;HOXA9_MEIS1:-0.587481007547;MYBL2:-0.59042396485;FOXA2:-0.596954788636;T:-0.597298149343;ALX1:-0.597824738532;FOX{F1,F2,J1}:-0.60142733809;AIRE:-0.615799966725;RFX1:-0.627135189697;HSF1,2:-0.637156157619;ATF5_CREB3:-0.643366716023;DBP:-0.646279824729;ATF2:-0.663690053469;ELF1,2,4:-0.665457888634;PRDM1:-0.701381886705;CRX:-0.70440863092;FOXO1,3,4:-0.716646046938;PDX1:-0.736731333972;MYFfamily:-0.757334327939;TAL1_TCF{3,4,12}:-0.781301422782;RBPJ:-0.784734750575;SOX5:-0.815487086202;PRRX1,2:-0.825978268668;TLX2:-0.84225789749;PAX3,7:-0.859000956262;HOX{A6,A7,B6,B7}:-0.876938670115;PATZ1:-0.883899278279;CREB1:-0.900969591554;PAX4:-0.936018389163;ALX4:-0.937715728238;RORA:-0.937882487605;FOX{I1,J2}:-0.965148146814;SREBF1,2:-0.968873494806;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976084406026;FOXN1:-0.977286684987;MZF1:-1.02061547852;EVI1:-1.02784741582;FOXP3:-1.04710193702;DMAP1_NCOR{1,2}_SMARC:-1.06031558034;TGIF1:-1.06998678408;NKX3-1:-1.07472289335;FOX{D1,D2}:-1.08742450344;XBP1:-1.09313163276;GATA4:-1.13273679035;AHR_ARNT_ARNT2:-1.13865534259;HMGA1,2:-1.17578650724;MAFB:-1.22028540653;ATF6:-1.22588891542;ZBTB16:-1.22897281621;NANOG{mouse}:-1.23520634286;IRF1,2:-1.32379435204;PAX6:-1.35770880914;HBP1_HMGB_SSRP1_UBTF:-1.36816789149;BPTF:-1.39743808619;ATF4:-1.39878990329;RFX2..5_RFXANK_RFXAP:-1.39880578389;FOXP1:-1.42837770836;CDX1,2,4:-1.72212087911;FOXD3:-1.77049209475;NKX6-1,2:-1.78132302756;STAT1,3:-1.81549711908;ZNF384:-1.82546830134;IKZF2:-1.83299330064
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11422-118F9;search_select_hide=table117:FF:11422-118F9
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Mammary Epithelial Cell, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12032
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage30 years old adult
sexfemale
age30
cell typemammary gland epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1669
catalog numberCA830-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004801
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12032 CAGE DRX008329 DRR009201
Accession ID Hg19

Library idBAMCTSS
CNhs12032 DRZ000626 DRZ002011
Accession ID Hg38

Library idBAMCTSS
CNhs12032 DRZ011976 DRZ013361
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004801
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GTTTCG sRNA-Seq DRX037106 DRR041472
Accession ID Hg19

Library idBAMCTSS
SRhi10007.GTTTCG DRZ007114


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.106
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.23
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.492
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0622
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.312
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.396
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.918
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.559
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.279
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.805
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0081
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.332
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.577
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.133
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.141
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.465
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12032

Jaspar motifP-value
MA0002.20.758
MA0003.10.558
MA0004.10.606
MA0006.10.0403
MA0007.10.183
MA0009.10.253
MA0014.10.355
MA0017.10.409
MA0018.25.28235e-4
MA0019.10.42
MA0024.10.328
MA0025.10.569
MA0027.10.229
MA0028.10.166
MA0029.10.175
MA0030.10.578
MA0031.10.105
MA0035.20.355
MA0038.10.0717
MA0039.20.0035
MA0040.10.37
MA0041.10.509
MA0042.10.865
MA0043.10.00335
MA0046.10.685
MA0047.20.776
MA0048.10.34
MA0050.13.74285e-9
MA0051.19.96557e-6
MA0052.10.886
MA0055.10.0109
MA0057.10.0395
MA0058.10.839
MA0059.10.372
MA0060.13.32738e-5
MA0061.10.0891
MA0062.20.0268
MA0065.20.709
MA0066.10.716
MA0067.10.0283
MA0068.10.214
MA0069.10.486
MA0070.10.185
MA0071.10.75
MA0072.10.854
MA0073.10.933
MA0074.10.894
MA0076.10.0183
MA0077.10.02
MA0078.10.25
MA0079.20.242
MA0080.25.60826e-5
MA0081.10.128
MA0083.10.284
MA0084.10.074
MA0087.10.885
MA0088.10.742
MA0090.10.00218
MA0091.10.477
MA0092.10.919
MA0093.10.666
MA0099.28.86984e-7
MA0100.10.604
MA0101.10.199
MA0102.20.0016
MA0103.19.97903e-6
MA0104.20.988
MA0105.10.0829
MA0106.15.34943e-11
MA0107.10.115
MA0108.20.00236
MA0111.10.278
MA0112.20.405
MA0113.10.606
MA0114.10.882
MA0115.10.926
MA0116.10.321
MA0117.10.0475
MA0119.10.238
MA0122.10.72
MA0124.10.84
MA0125.10.529
MA0131.10.429
MA0135.10.0125
MA0136.10.00667
MA0137.20.00734
MA0138.20.219
MA0139.10.841
MA0140.10.528
MA0141.10.798
MA0142.10.0276
MA0143.10.954
MA0144.10.311
MA0145.10.148
MA0146.10.0888
MA0147.10.796
MA0148.10.789
MA0149.10.0488
MA0150.10.808
MA0152.10.669
MA0153.10.192
MA0154.10.974
MA0155.10.476
MA0156.10.0406
MA0157.10.156
MA0159.10.425
MA0160.10.326
MA0162.10.344
MA0163.10.138
MA0164.10.405
MA0258.10.845
MA0259.10.781



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12032

Novel motifP-value
10.6
100.0584
1000.919
1010.00626
1020.0982
1030.551
1040.589
1050.301
1060.243
1070.0103
1080.768
1098.51762e-4
110.253
1100.304
1110.626
1120.936
1130.213
1140.849
1150.286
1160.65
1170.369
1180.63
1190.288
120.744
1200.125
1210.407
1220.084
1230.0806
1240.0601
1250.736
1260.604
1270.0628
1280.952
1290.243
130.237
1300.21
1310.475
1320.322
1330.0302
1340.055
1350.884
1360.0515
1370.0135
1380.36
1390.0941
140.882
1400.903
1410.468
1420.0327
1430.996
1440.191
1450.427
1460.00721
1470.246
1480.0564
1490.592
150.639
1500.238
1510.339
1520.0178
1530.396
1540.527
1550.824
1560.577
1570.88
1580.0558
1590.886
160.0764
1600.0863
1610.291
1620.515
1630.852
1640.722
1650.936
1660.63
1670.183
1680.577
1690.195
170.296
180.794
190.983
20.0577
200.764
210.886
220.194
230.956
240.252
250.621
260.289
270.199
280.833
290.891
30.71
300.0193
310.621
320.76
330.244
340.795
350.0633
360.256
370.922
380.448
390.346
40.447
400.0473
410.554
420.783
430.75
440.779
450.0813
460.821
470.466
480.128
490.201
50.271
500.506
510.899
520.479
530.378
540.649
550.649
560.464
570.585
580.437
590.197
60.598
600.413
610.907
620.369
630.327
640.404
650.504
660.228
670.304
680.614
690.0532
70.84
700.782
710.244
720.827
730.00594
740.15
750.791
760.248
770.0323
780.358
790.442
80.314
800.553
810.393
820.706
830.706
840.281
850.831
860.511
870.00401
880.677
890.00482
90.896
900.00161
910.884
920.4
930.365
940.328
950.0273
960.364
970.849
980.47
993.11316e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12032


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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