FF:11456-119A7: Difference between revisions

Latest revision as of 18:02, 4 June 2020

Name:	Fibroblast - Cardiac, donor5
Species:	Human (Homo sapiens)
Library ID:	CNhs12057
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2832
catalog number	SC6305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005027

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12057		CAGE		DRX008247		DRR009119

Accession ID Hg19

Library id		BAM		CTSS
CNhs12057		DRZ000544		DRZ001929

Accession ID Hg38

Library id		BAM		CTSS
CNhs12057		DRZ011894		DRZ013279

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0929
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0923
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.353
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.201
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0616
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.283
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.288
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.152
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.1
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0118
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.104
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0549
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.517
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.383
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.187
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.857
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.416
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.736
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12057

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00266
MA0003.1	MA0003.1	0.773
MA0004.1	MA0004.1	0.348
MA0006.1	MA0006.1	0.154
MA0007.1	MA0007.1	0.397
MA0009.1	MA0009.1	0.704
MA0014.1	MA0014.1	0.887
MA0017.1	MA0017.1	0.0666
MA0018.2	MA0018.2	0.0288
MA0019.1	MA0019.1	0.865
MA0024.1	MA0024.1	0.885
MA0025.1	MA0025.1	0.0496
MA0027.1	MA0027.1	0.55
MA0028.1	MA0028.1	0.00473
MA0029.1	MA0029.1	0.0576
MA0030.1	MA0030.1	0.547
MA0031.1	MA0031.1	0.99
MA0035.2	MA0035.2	0.85
MA0038.1	MA0038.1	0.763
MA0039.2	MA0039.2	0.851
MA0040.1	MA0040.1	0.523
MA0041.1	MA0041.1	0.33
MA0042.1	MA0042.1	0.744
MA0043.1	MA0043.1	0.0262
MA0046.1	MA0046.1	0.0141
MA0047.2	MA0047.2	0.111
MA0048.1	MA0048.1	0.0826
MA0050.1	MA0050.1	0.00895
MA0051.1	MA0051.1	0.189
MA0052.1	MA0052.1	0.0119
MA0055.1	MA0055.1	0.0197
MA0057.1	MA0057.1	0.463
MA0058.1	MA0058.1	0.135
MA0059.1	MA0059.1	0.166
MA0060.1	MA0060.1	0.609
MA0061.1	MA0061.1	0.0364
MA0062.2	MA0062.2	0.425
MA0065.2	MA0065.2	6.72034e-4
MA0066.1	MA0066.1	0.565
MA0067.1	MA0067.1	0.139
MA0068.1	MA0068.1	0.0447
MA0069.1	MA0069.1	0.973
MA0070.1	MA0070.1	0.927
MA0071.1	MA0071.1	0.819
MA0072.1	MA0072.1	0.428
MA0073.1	MA0073.1	0.818
MA0074.1	MA0074.1	0.264
MA0076.1	MA0076.1	0.0821
MA0077.1	MA0077.1	0.119
MA0078.1	MA0078.1	0.234
MA0079.2	MA0079.2	0.304
MA0080.2	MA0080.2	5.97106e-6
MA0081.1	MA0081.1	0.427
MA0083.1	MA0083.1	0.787
MA0084.1	MA0084.1	0.00386
MA0087.1	MA0087.1	0.151
MA0088.1	MA0088.1	0.776
MA0090.1	MA0090.1	0.137
MA0091.1	MA0091.1	0.835
MA0092.1	MA0092.1	0.476
MA0093.1	MA0093.1	0.328
MA0099.2	MA0099.2	0.0554
MA0100.1	MA0100.1	0.713
MA0101.1	MA0101.1	0.885
MA0102.2	MA0102.2	0.953
MA0103.1	MA0103.1	2.2864e-4
MA0104.2	MA0104.2	0.0432
MA0105.1	MA0105.1	0.00255
MA0106.1	MA0106.1	0.86
MA0107.1	MA0107.1	0.615
MA0108.2	MA0108.2	0.439
MA0111.1	MA0111.1	0.361
MA0112.2	MA0112.2	0.0304
MA0113.1	MA0113.1	0.126
MA0114.1	MA0114.1	0.00524
MA0115.1	MA0115.1	0.144
MA0116.1	MA0116.1	0.00701
MA0117.1	MA0117.1	0.184
MA0119.1	MA0119.1	0.88
MA0122.1	MA0122.1	0.78
MA0124.1	MA0124.1	0.54
MA0125.1	MA0125.1	0.484
MA0131.1	MA0131.1	0.359
MA0135.1	MA0135.1	0.0457
MA0136.1	MA0136.1	6.26749e-5
MA0137.2	MA0137.2	0.481
MA0138.2	MA0138.2	0.304
MA0139.1	MA0139.1	0.147
MA0140.1	MA0140.1	0.676
MA0141.1	MA0141.1	0.498
MA0142.1	MA0142.1	0.0483
MA0143.1	MA0143.1	0.292
MA0144.1	MA0144.1	0.618
MA0145.1	MA0145.1	0.568
MA0146.1	MA0146.1	0.683
MA0147.1	MA0147.1	0.0767
MA0148.1	MA0148.1	0.297
MA0149.1	MA0149.1	0.257
MA0150.1	MA0150.1	0.0822
MA0152.1	MA0152.1	0.0967
MA0153.1	MA0153.1	0.207
MA0154.1	MA0154.1	0.0445
MA0155.1	MA0155.1	0.854
MA0156.1	MA0156.1	0.447
MA0157.1	MA0157.1	0.375
MA0159.1	MA0159.1	0.323
MA0160.1	MA0160.1	0.044
MA0162.1	MA0162.1	0.278
MA0163.1	MA0163.1	0.0592
MA0164.1	MA0164.1	0.553
MA0258.1	MA0258.1	0.0684
MA0259.1	MA0259.1	0.201

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12057

Novel motif	Logo	P-value
1	1	0.179
10	10	0.378
100	100	0.976
101	101	0.118
102	102	0.457
103	103	0.345
104	104	0.792
105	105	0.27
106	106	0.354
107	107	0.877
108	108	0.755
109	109	0.65
11	11	0.55
110	110	0.499
111	111	0.038
112	112	0.319
113	113	0.0574
114	114	0.121
115	115	0.481
116	116	0.442
117	117	0.984
118	118	0.533
119	119	0.358
12	12	0.223
120	120	0.116
121	121	0.82
122	122	0.0274
123	123	0.00447
124	124	0.00525
125	125	0.601
126	126	0.659
127	127	0.071
128	128	0.7
129	129	0.204
13	13	0.446
130	130	0.545
131	131	0.93
132	132	0.201
133	133	0.391
134	134	0.475
135	135	0.605
136	136	0.151
137	137	0.17
138	138	0.806
139	139	0.382
14	14	0.199
140	140	0.704
141	141	0.528
142	142	0.0592
143	143	0.543
144	144	0.861
145	145	0.464
146	146	0.901
147	147	0.52
148	148	0.226
149	149	0.157
15	15	0.0667
150	150	0.35
151	151	0.652
152	152	0.0735
153	153	0.738
154	154	0.835
155	155	0.00265
156	156	0.446
157	157	0.306
158	158	0.0082
159	159	0.2
16	16	0.895
160	160	0.369
161	161	0.422
162	162	0.997
163	163	0.391
164	164	0.298
165	165	0.0673
166	166	0.498
167	167	0.266
168	168	0.647
169	169	0.87
17	17	0.512
18	18	0.632
19	19	0.774
2	2	0.884
20	20	0.627
21	21	0.617
22	22	0.682
23	23	0.676
24	24	0.466
25	25	0.0659
26	26	0.926
27	27	0.766
28	28	0.278
29	29	0.751
3	3	0.728
30	30	0.977
31	31	0.94
32	32	3.34248e-4
33	33	0.801
34	34	0.71
35	35	0.0828
36	36	0.145
37	37	0.999
38	38	0.333
39	39	0.514
4	4	0.0158
40	40	0.0648
41	41	0.339
42	42	0.396
43	43	0.137
44	44	0.832
45	45	0.395
46	46	0.253
47	47	0.443
48	48	0.999
49	49	0.0666
5	5	0.255
50	50	0.557
51	51	0.354
52	52	0.451
53	53	0.172
54	54	0.602
55	55	0.673
56	56	0.426
57	57	0.659
58	58	0.0403
59	59	0.533
6	6	0.62
60	60	0.172
61	61	0.564
62	62	0.0761
63	63	0.607
64	64	0.417
65	65	0.674
66	66	0.924
67	67	0.951
68	68	0.834
69	69	0.725
7	7	0.129
70	70	0.0478
71	71	0.231
72	72	0.491
73	73	0.0352
74	74	0.756
75	75	0.409
76	76	0.924
77	77	0.682
78	78	0.532
79	79	0.147
8	8	0.883
80	80	0.19
81	81	0.103
82	82	0.0287
83	83	0.391
84	84	0.731
85	85	0.474
86	86	0.972
87	87	0.0119
88	88	0.956
89	89	0.436
9	9	0.729
90	90	0.331
91	91	0.419
92	92	0.517
93	93	0.208
94	94	0.0596
95	95	0.134
96	96	0.12
97	97	0.513
98	98	0.0153
99	99	0.0643

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12057

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000059 human cardiac fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
+|DRA_sample_Accession=CAGE@SAMD00005027
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002494,CL:0000057,CL:0002548
+|accession_numbers=CAGE;DRX008247;DRR009119;DRZ000544;DRZ001929;DRZ011894;DRZ013279
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
 |comment=
 |created_by=tmeehan
 |creation_date=2011-06-15T12:34:29Z
+|data_phase=2
+|datafreeze_phase=2
 |def="A fibroblast from cardiac tissue." [GOC:tfm]
 |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.78!59.81!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.56!HIF3A;;chr7:35293685..35293718,-!p1@TBX20!1.55!34.76!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.55!34.35!GATA4;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.17!SOX18;;chr4:174451370..174451387,-!p1@HAND2!1.18!14.28!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.16!13.47!TCF21;;chr21:39870339..39870443,-!p1@ERG!1.10!11.72!ERG;;chr18:19749541..19749557,+!p1@GATA6!1.08!35.29!GATA6;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.12!TCF4;;chr3:141087393..141087426,+!p3@ZBTB38!1.05!40.82!ZBTB38;;chr8:10588010..10588030,-!p1@SOX7!1.04!9.97!SOX7;;chr17:6926362..6926377,+!p1@BCL6B!1.03!9.70!BCL6B;;chr7:19157248..19157268,-!p1@TWIST1!1.00!25.46!TWIST1;;chrY:21906594..21906622,-!p1@KDM5D!0.97!8.35!KDM5D;;chr11:61520075..61520136,+!p1@C11orf9!0.95!17.38!C11orf9;;chrY:2803415..2803468,+!p1@ZFY!0.95!7.95!ZFY;;chr8:72756637..72756664,-!p3@MSC!0.93!8.49!MSC;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.47!CREB3L1;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.34!TBX18;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.08!HMGA2;;chr11:113930425..113930471,+!p1@ZBTB16!0.91!10.51!ZBTB16;;chr20:42543441..42543497,+!p1@TOX2!0.90!32.33!TOX2;;chr18:53257001..53257015,-!p5@TCF4!0.90!12.26!TCF4;;chr8:72756267..72756296,-!p4@MSC!0.90!10.51!MSC;;chr1:170633348..170633399,+!p2@PRRX1!0.90!9.56!PRRX1;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.62!TBX18;;chr1:170633262..170633285,+!p3@PRRX1!0.88!7.68!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.87!34.89!HIF1A;;chr8:72756667..72756736,-!p2@MSC!0.87!10.24!MSC;;chr10:94449703..94449718,+!p1@HHEX!0.86!25.19!HHEX;;chr3:169381420..169381535,-!p1@MECOM!0.86!7.41!MECOM;;chr8:106330656..106330684,+!p1@ZFPM2!0.85!16.84!ZFPM2;;chr6:126240380..126240430,+!p2@NCOA7!0.85!16.57!NCOA7;;chr8:72756063..72756125,-!p1@MSC!0.85!12.93!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.70!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!0.84!8.62!GATA6;;chr17:1959369..1959388,+!p2@HIC1!0.83!15.90!HIC1;;chr10:131762504..131762555,-!p1@EBF3!0.83!5.79!EBF3;;chr12:66218836..66218888,+!p1@HMGA2!0.81!55.64!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.81!13.88!TOX2;;chr4:174450089..174450153,-!p2@HAND2!0.81!5.52!HAND2;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.39!BNC2;;chr5:92918919..92918942,+!p1@NR2F1!0.80!25.73!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.01!TWIST1;;chr14:62162258..62162269,+!p2@HIF1A!0.79!54.15!HIF1A;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.06!BNC1;;chr1:170632285..170632309,+!p1@PRRX1!0.79!5.93!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.77!526.99!EPAS1;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.62!NFIB;;chrX:106960180..106960197,-!p2@TSC22D3!0.74!18.99!TSC22D3;;chr3:141087454..141087465,+!p19@ZBTB38!0.74!4.45!ZBTB38;;chr3:168864315..168864339,-!p2@MECOM!0.73!7.68!MECOM;;chr8:49833948..49833973,-!p2@SNAI2!0.72!30.04!SNAI2;;chrX:106960285..106960299,-!p1@TSC22D3!0.71!125.42!TSC22D3;;chr17:46132044..46132080,+!p4@NFE2L1!0.71!4.18!NFE2L1;;chr12:96588368..96588394,+!p3@ELK3!0.70!11.99!ELK3;;chr11:46299539..46299620,+!p2@CREB3L1!0.70!7.14!CREB3L1;;chr6:1610293..1610310,+!p1@FOXC1!0.69!6.87!FOXC1;;chr12:66218183..66218209,+!p4@HMGA2!0.67!7.68!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.66!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.66!11.18!EPAS1;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.50!NFIB;;chr11:128563948..128564003,+!p1@FLI1!0.65!48.36!FLI1;;chr1:158979872..158979898,+!p3@IFI16!0.65!12.12!IFI16;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.64!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!0.65!3.91!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.65!3.50!FOXS1;;chr6:29648890..29648944,-!p1@ZFP57!0.65!3.50!ZFP57;;chr8:72755987..72756002,-!p7@MSC!0.65!3.50!MSC;;chr3:12329397..12329433,+!p2@PPARG!0.62!8.08!PPARG;;chr6:126070769..126070801,+!p1@HEY2!0.62!3.77!HEY2;;chr3:168865194..168865245,-!p3@MECOM!0.61!4.18!MECOM;;chr8:72756023..72756055,-!p6@MSC!0.61!4.04!MSC;;chr9:14083467..14083483,-!p4@NFIB!0.60!8.49!NFIB;;chr11:128563652..128563689,+!p3@FLI1!0.60!2.96!FLI1;;chr14:62162224..62162254,+!p1@HIF1A!0.59!515.13!HIF1A;;chr7:17338266..17338282,+!p1@AHR!0.59!37.72!AHR;;chr3:128206762..128206781,-!p2@GATA2!0.59!21.55!GATA2;;chr5:92918956..92918969,+!p4@NR2F1!0.59!3.23!NR2F1;;chr17:46126136..46126152,+!p1@NFE2L1!0.58!177.82!NFE2L1;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.89!ZBTB38;;chr18:53255415..53255491,-!p1@TCF4!0.58!28.83!TCF4;;chr3:178789522..178789564,-!p2@ZMAT3!0.58!24.92!ZMAT3;;chr15:37392616..37392638,-!p2@MEIS2!0.58!10.37!MEIS2;;chr9:14082760..14082775,-!p6@NFIB!0.58!5.12!NFIB;;chr8:80679993..80680011,-!p1@HEY1!0.58!4.45!HEY1;;chr11:113930291..113930339,+!p2@ZBTB16!0.57!4.85!ZBTB16;;chr15:37390374..37390422,-!p9@MEIS2!0.57!3.50!MEIS2;;chr2:214014959..214015006,-!p4@IKZF2!0.57!2.69!IKZF2;;chr8:49833978..49833996,-!p1@SNAI2!0.56!67.89!SNAI2;;chr2:239756739..239756755,+!p2@TWIST2!0.56!4.98!TWIST2;;chr8:72756213..72756243,-!p5@MSC!0.56!3.64!MSC;;chr6:126102292..126102329,+!p3@NCOA7!0.55!9.97!NCOA7;;chr18:53177984..53178004,-!p17@TCF4!0.55!2.56!TCF4;;chr10:94449675..94449694,+!p2@HHEX!0.54!7.81!HHEX;;chr1:23885981..23886002,-!p1@ID3!0.53!538.71!ID3;;chr7:26191809..26191890,+!p1@NFE2L3!0.53!14.68!NFE2L3;;chr2:239756671..239756732,+!p1@TWIST2!0.53!9.30!TWIST2;;chr3:25469724..25469773,+!p1@RARB!0.53!3.77!RARB;;chr2:46602879..46602899,+!p8@EPAS1!0.53!3.10!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.53!3.10!NR2F1;;chr19:58341656..58341694,+!p5@ZNF587!0.52!2.96!ZNF587;;chr19:13213511..13213545,-!p2@LYL1!0.52!2.56!LYL1;;chr11:113930401..113930422,+!p3@ZBTB16!0.52!2.29!ZBTB16;;chr3:169381183..169381205,-!p4@MECOM!0.52!2.29!MECOM;;chr5:124082322..124082364,-!p1@ZNF608!0.51!7.00!ZNF608;;chr12:104531823..104531849,-!p5@NFYB!0.51!5.52!NFYB;;chr2:85980951..85981004,+!p1@ATOH8!0.51!4.18!ATOH8;;chr20:48599506..48599526,+!p1@SNAI1!0.50!17.92!SNAI1;;chr19:35455110..35455149,-!p1@ZNF792!0.50!4.98!ZNF792;;chr9:14313893..14313908,-!p7@NFIB!0.50!3.50!NFIB;;chr4:174451350..174451363,-!p3@HAND2!0.50!2.16!HAND2;;chr8:77593750..77593757,+!p3@ZFHX4!0.50!2.16!ZFHX4;;chr3:187463179..187463201,-!p2@BCL6!0.49!11.05!BCL6;;chr18:19749517..19749531,+!p3@GATA6!0.49!4.31!GATA6;;chr15:57511609..57511651,+!p2@TCF12!0.49!4.04!TCF12;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.64!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.48!222.81!ID1;;chr1:23886132..23886156,-!p2@ID3!0.48!2.42!ID3;;chr3:170076223..170076242,+!p6@SKIL!0.48!2.42!SKIL;;chr19:46800289..46800327,+!p2@HIF3A!0.48!2.02!HIF3A;;chr12:66218904..66218913,+!p11@HMGA2!0.48!2.02!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.48!2.02!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.48!2.02!HMGA2;;chr14:74256787..74256858,-!p6@C14orf43!0.48!2.02!C14orf43;;chr5:172662197..172662216,-!p1@NKX2-5!0.48!2.02!NKX2-5;;chr2:70142232..70142251,+!p1@MXD1!0.47!14.41!MXD1;;chr4:10458982..10459007,-!p2@ZNF518B!0.47!8.22!ZNF518B;;chr1:8926441..8926473,-!p10@ENO1!0.47!3.37!ENO1;;chr1:158979792..158979814,+!p2@IFI16!0.46!24.65!IFI16;;chr2:214015111..214015179,-!p1@IKZF2!0.46!4.04!IKZF2;;chr15:96876966..96877017,+!p12@NR2F2!0.46!3.10!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.46!2.83!EPAS1;;chr3:141087562..141087594,+!p12@ZBTB38!0.46!1.89!ZBTB38;;chr1:40105299..40105326,-!p1@HEYL!0.46!1.89!HEYL;;chr11:32457075..32457095,-!p1@WT1!0.46!1.89!WT1;;chr9:14314066..14314075,-!p11@NFIB!0.46!1.89!NFIB;;chr6:144329384..144329405,-!p1@PLAGL1!0.45!29.50!PLAGL1;;chr15:37392724..37392757,-!p1@MEIS2!0.45!11.18!MEIS2;;chr12:3069037..3069119,+!p2@TEAD4!0.45!8.22!TEAD4;;chr2:231280954..231280965,+!p2@SP100!0.45!4.04!SP100;;chr9:14314106..14314119,-!p5@NFIB!0.45!3.91!NFIB;;chr19:53496768..53496799,-!p1@ZNF702P!0.45!3.23!ZNF702P;;chr16:86544113..86544145,+!p1@FOXF1!0.45!2.42!FOXF1;;chr11:46299186..46299195,+!p3@CREB3L1!0.45!2.16!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!0.44!75.17!HMGA1;;chr21:47063625..47063658,+!p1@PCBP3!0.44!10.24!PCBP3;;chr1:8934931..8934947,-!p4@ENO1!0.44!7.68!ENO1;;chrX:106960221..106960236,-!p3@TSC22D3!0.44!6.33!TSC22D3;;chr3:12329358..12329393,+!p3@PPARG!0.44!5.52!PPARG;;chr2:45236540..45236577,-!p1@SIX2!0.44!1.75!SIX2;;chr18:53068982..53068993,-!p20@TCF4!0.44!1.75!TCF4;;chr11:128562372..128562397,+!p4@FLI1!0.44!1.75!FLI1;;chr12:115122318..115122331,-!p2@TBX3!0.44!1.75!TBX3;;chr9:14083091..14083096,-!p12@NFIB!0.44!1.75!NFIB;;chr20:42602000..42602034,+!p5@TOX2!0.44!1.75!TOX2;;chr10:63809013..63809041,+!p3@ARID5B!0.43!13.07!ARID5B;;chr19:58220517..58220583,-!p1@ZNF154!0.43!7.14!ZNF154;;chr5:158526917..158526932,-!p1@EBF1!0.43!5.39!EBF1;;chr16:8962202..8962222,-!p3@CARHSP1!0.43!3.64!CARHSP1;;chr9:73028598..73028617,-!p5@KLF9!0.43!3.50!KLF9;;chr20:50721803..50721857,-!p2@ZFP64!0.43!3.10!ZFP64;;chr5:92919068..92919082,+!p5@NR2F1!0.43!2.16!NR2F1;;chr10:63809106..63809127,+!p1@ARID5B!0.42!31.66!ARID5B;;chr7:149470641..149470694,-!p1@ZNF467!0.42!10.24!ZNF467;;chr11:128392273..128392308,-!p2@ETS1!0.42!9.43!ETS1;;chr12:57504975..57505019,-!p2@STAT6!0.42!9.03!STAT6;;chr6:10412600..10412637,-!p1@TFAP2A!0.42!3.23!TFAP2A;;chr7:100076723..100076737,-!p3@TSC22D4!0.42!3.10!TSC22D4;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.10!ETV4;;chr6:126240442..126240459,+!p4@NCOA7!0.42!2.29!NCOA7;;chr8:106330696..106330719,+!p2@ZFPM2!0.42!2.29!ZFPM2;;chr7:35293665..35293680,-!p2@TBX20!0.42!1.62!TBX20;;chr1:170633194..170633205,+!p18@PRRX1!0.42!1.62!PRRX1;;chr9:14314946..14314983,-!p8@NFIB!0.42!1.62!NFIB;;chrX:107018836..107018862,-!p8@TSC22D3!0.42!1.62!TSC22D3;;chr15:83953373..83953386,-!p2@BNC1!0.42!1.62!BNC1;;chr6:126112074..126112144,+!p1@NCOA7!0.41!30.98!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.41!18.99!TBX3;;chr17:1958388..1958404,+!p1@HIC1!0.41!14.41!HIC1;;chr21:40177892..40177903,+!p2@ETS2!0.41!8.76!ETS2;;chr18:53257027..53257052,-!p3@TCF4!0.41!8.62!TCF4;;chr1:8483878..8483907,-!p4@RERE!0.41!8.49!RERE;;chr7:17338324..17338341,+!p3@AHR!0.41!7.14!AHR;;chr9:14314522..14314556,-!p3@NFIB!0.41!4.71!NFIB;;chr15:37390850..37390909,-!p3@MEIS2!0.41!3.91!MEIS2;;chr1:120190786..120190915,-!p1@ZNF697!0.40!15.76!ZN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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor5.CNhs12057.11456-119A7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor5.CNhs12057.11456-119A7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor5.CNhs12057.11456-119A7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor5.CNhs12057.11456-119A7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor5.CNhs12057.11456-119A7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11456-119A7
 |is_a=EFO:0002091;;FF:0000059
 |is_obsolete=
+|library_id=CNhs12057
+|library_id_phase_based=2:CNhs12057
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11456
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11456
 |name=Fibroblast - Cardiac, donor5
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12057,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=119
 |rna_catalog_number=SC6305
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=RXR{A,B,G}:1.30617411603;NKX2-2,8:0.933520725477;TLX1..3_NFIC{dimer}:0.925942733281;EN1,2:0.900967696267;ALX1:0.900503240457;XCPE1{core}:0.897688604735;IKZF1:0.888176772279;NR3C1:0.850086001353;TFAP4:0.824997937771;UFEwm:0.817680481627;NKX3-1:0.811509920285;CDC5L:0.809179361303;ALX4:0.799397888443;RXRA_VDR{dimer}:0.747559917536;AR:0.730882216388;XBP1:0.708348201019;EBF1:0.697891927047;NANOG{mouse}:0.683980957516;EVI1:0.680632728216;HIF1A:0.645238091965;NFATC1..3:0.636186952924;POU3F1..4:0.631365625924;SOX17:0.607570316073;ONECUT1,2:0.553655826197;GLI1..3:0.533946103658;TEAD1:0.52563971083;PAX5:0.496094600873;GFI1B:0.494622762611;FOXD3:0.476585947298;ELF1,2,4:0.46678264471;HOX{A5,B5}:0.440537448615;AIRE:0.433192697262;GTF2A1,2:0.423056642002;TP53:0.418419832215;MAFB:0.413944253972;PATZ1:0.412797616105;MYBL2:0.404021394007;MTE{core}:0.400137392943;ZNF238:0.386287432515;RBPJ:0.370126681144;TFDP1:0.365084900391;TBX4,5:0.358657223067;POU1F1:0.356433008616;TAL1_TCF{3,4,12}:0.348530495541;MAZ:0.345198145642;HMGA1,2:0.341543967536;SP1:0.337405289203;TFAP2{A,C}:0.331229906682;HES1:0.326031485289;GTF2I:0.324324347495;BPTF:0.32117352274;GFI1:0.31945429067;NFE2L1:0.316008447993;TOPORS:0.313293883707;SOX2:0.308637781524;HBP1_HMGB_SSRP1_UBTF:0.298795102242;SOX{8,9,10}:0.295580307472;ELK1,4_GABP{A,B1}:0.288509838267;TFAP2B:0.288233446998;ZNF143:0.278346526203;bHLH_family:0.274433739324;PAX1,9:0.274167938197;EGR1..3:0.2631214854;CRX:0.25988819218;CEBPA,B_DDIT3:0.243557203128;HSF1,2:0.223396106023;FOX{I1,J2}:0.222671651869;ZFP161:0.205041317086;LHX3,4:0.190374540772;PAX8:0.189999731609;HIC1:0.185413690018;ZIC1..3:0.184713122879;PRDM1:0.183637195165;TEF:0.165386632371;MZF1:0.147442772418;NFE2L2:0.13936858711;STAT2,4,6:0.136531624522;SPZ1:0.131737876946;SRF:0.125046375112;ZNF148:0.11948797892;CDX1,2,4:0.11408160418;GATA4:0.110325067649;ARID5B:0.109356426302;HLF:0.107509801718;PPARG:0.105464959624;NRF1:0.105277450646;ADNP_IRX_SIX_ZHX:0.0908255911698;NHLH1,2:0.0868608858238;LEF1_TCF7_TCF7L1,2:0.0861752658476;AHR_ARNT_ARNT2:0.085669283395;ZBTB6:0.0847058281538;SMAD1..7,9:0.0841839885364;REST:0.0765721698954;NFIX:0.0764742512502;GZF1:0.0736245065593;TLX2:0.0659009473929;NKX2-1,4:0.058725212923;MYB:0.0567156522481;ZBTB16:0.0416040445105;NR5A1,2:0.0356567294184;TFCP2:0.0275837061998;FOXP1:0.0198076659513;YY1:0.0136546683055;STAT1,3:0.0115406506399;GATA6:0.00344255063012;BACH2:-0.0139229699991;TBP:-0.0250546705921;STAT5{A,B}:-0.0256918654008;ETS1,2:-0.0361901736986;ZNF384:-0.0563053197159;ESR1:-0.0611273933317;KLF4:-0.0905564157522;NFKB1_REL_RELA:-0.0907670747717;HNF4A_NR2F1,2:-0.0921112050737;E2F1..5:-0.103196559337;ZNF423:-0.107755849279;ATF4:-0.112439542764;NFY{A,B,C}:-0.114195535863;FOS_FOS{B,L1}_JUN{B,D}:-0.11979160693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.120166233932;NFE2:-0.121010577595;MED-1{core}:-0.121789390595;HNF1A:-0.123020292606;PAX3,7:-0.142493054659;PAX4:-0.144518138074;SPI1:-0.146428306558;PBX1:-0.147877183861;PAX6:-0.15980435886;FOXP3:-0.169373424008;SREBF1,2:-0.171320885532;FOSL2:-0.171386409426;FOXL1:-0.181103216756;NR6A1:-0.204662880003;SOX5:-0.220137345471;IKZF2:-0.221416457739;CUX2:-0.221471401521;PITX1..3:-0.234211888108;SPIB:-0.237401377613;MTF1:-0.241333956414;IRF7:-0.25051053771;ESRRA:-0.260237079365;PDX1:-0.264698486606;FOX{D1,D2}:-0.266589221937;HMX1:-0.272580230643;TGIF1:-0.277600722754;PAX2:-0.285630960238;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.295060529961;BREu{core}:-0.324179391662;ATF6:-0.325440706837;PRRX1,2:-0.335029593171;HOXA9_MEIS1:-0.348029785111;DBP:-0.349819458016;MEF2{A,B,C,D}:-0.353289705406;MYFfamily:-0.380934853782;RFX1:-0.397326782347;HOX{A4,D4}:-0.399051960321;FOX{F1,F2,J1}:-0.399134022245;NKX6-1,2:-0.402935364438;POU2F1..3:-0.404039087532;FOXN1:-0.409693629044;FOXO1,3,4:-0.416642252115;NKX3-2:-0.422699500541;ATF2:-0.42764894176;LMO2:-0.435383526801;FOXA2:-0.462869078665;POU6F1:-0.466874964756;DMAP1_NCOR{1,2}_SMARC:-0.479185013048;JUN:-0.487137625997;GCM1,2:-0.494613266076;ATF5_CREB3:-0.496229292445;RUNX1..3:-0.50262843996;HAND1,2:-0.508577338369;IRF1,2:-0.512920409889;CREB1:-0.514149162213;NR1H4:-0.519019457491;POU5F1:-0.545747149282;T:-0.558767174127;OCT4_SOX2{dimer}:-0.562785060267;NFIL3:-0.580454294619;MYOD1:-0.601512548979;RORA:-0.62455874376;FOXM1:-0.642444059544;RREB1:-0.652361129993;FOXQ1:-0.67330722704;EP300:-0.674727922325;RFX2..5_RFXANK_RFXAP:-0.799718940461;NANOG:-0.85926672363;NKX2-3_NKX2-5:-0.875479699727;SNAI1..3:-0.882439674838;ZEB1:-0.902032586901;VSX1,2:-0.965606892076;HOX{A6,A7,B6,B7}:-1.68051941317
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11456-119A7;search_select_hide=table117:FF:11456-119A7
 }}

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FF:11456-119A7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:02, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0