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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0007100,UBERON:0000948,UBERON:0000483,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0005291,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0004535,UBERON:0005498,UBERON:0003081,UBERON:0001009,UBERON:0004140,UBERON:0009881,UBERON:0006603,UBERON:0004141,UBERON:0004872,UBERON:0003084,UBERON:0007005,UBERON:0004139,UBERON:0004291
|DRA_sample_Accession=CAGE@SAMD00005402
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|accession_numbers=CAGE;DRX008248;DRR009120;DRZ000545;DRZ001930;DRZ011895;DRZ013280
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
|comment=
|comment=
|created_by=tmeehan
|created_by=tmeehan
|creation_date=2011-06-15T12:34:29Z
|creation_date=2011-06-15T12:34:29Z
|data_phase=2
|datafreeze_phase=2
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.80!62.12!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.80!61.79!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.78!58.68!HIF3A;;chr7:35293685..35293718,-!p1@TBX20!1.70!48.55!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.57!36.29!GATA4;;chr4:174451370..174451387,-!p1@HAND2!1.41!24.68!HAND2;;chr3:141087393..141087426,+!p3@ZBTB38!1.32!77.15!ZBTB38;;chr8:106330656..106330684,+!p1@ZFPM2!1.20!38.25!ZFPM2;;chr17:1959369..1959388,+!p2@HIC1!1.17!36.45!HIC1;;chr20:62680984..62680999,-!p1@SOX18!1.17!18.47!SOX18;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.89!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.08!50.84!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.05!32.37!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.05!14.71!GATA6;;chr12:66218183..66218209,+!p4@HMGA2!1.04!19.45!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!1.04!9.97!EBF3;;chr6:85474299..85474324,-!p1@TBX18!1.01!16.67!TBX18;;chr12:66218836..66218888,+!p1@HMGA2!1.00!86.80!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!1.00!10.13!TCF4;;chr1:158975744..158975769,+!p10@IFI16!0.99!8.66!IFI16;;chr11:113930425..113930471,+!p1@ZBTB16!0.98!12.59!ZBTB16;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.81!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.97!8.34!KDM5D;;chr12:66218212..66218244,+!p5@HMGA2!0.92!10.95!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.92!9.48!ZFPM2;;chr7:19157248..19157268,-!p1@TWIST1!0.91!20.60!TWIST1;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.81!PRRX1;;chr2:46612334..46612349,+!p6@EPAS1!0.91!9.64!EPAS1;;chr21:39870339..39870443,-!p1@ERG!0.91!7.19!ERG;;chr4:174450089..174450153,-!p2@HAND2!0.89!6.70!HAND2;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.38!ZFY;;chr11:32457075..32457095,-!p1@WT1!0.87!6.38!WT1;;chr15:57511609..57511651,+!p2@TCF12!0.86!10.95!TCF12;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.21!BNC2;;chr20:42543441..42543497,+!p1@TOX2!0.84!28.12!TOX2;;chr20:30193083..30193098,+!p1@ID1!0.83!505.75!ID1;;chr10:94449703..94449718,+!p1@HHEX!0.82!23.21!HHEX;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.38!PRRX1;;chr3:141087454..141087465,+!p19@ZBTB38!0.82!5.56!ZBTB38;;chr2:85980951..85981004,+!p1@ATOH8!0.80!8.99!ATOH8;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.38!MECOM;;chr14:62162258..62162269,+!p2@HIF1A!0.79!54.11!HIF1A;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.24!TOX2;;chr18:53257001..53257015,-!p5@TCF4!0.79!9.32!TCF4;;chr19:47523058..47523114,+!p1@NPAS1!0.77!4.90!NPAS1;;chr12:66218904..66218913,+!p11@HMGA2!0.76!4.74!HMGA2;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.47!ZBTB38;;chr5:92918919..92918942,+!p1@NR2F1!0.75!22.88!NR2F1;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.46!C11orf9;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.95!NFIB;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.99!HIF1A;;chr9:14314566..14314618,-!p1@NFIB!0.73!59.01!NFIB;;chr11:46299199..46299233,+!p1@CREB3L1!0.73!25.34!CREB3L1;;chr1:23885981..23886002,-!p1@ID3!0.72!833.49!ID3;;chr15:37392724..37392757,-!p1@MEIS2!0.71!20.92!MEIS2;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.09!TBX3;;chr19:58373157..58373159,+!p4@ZNF587!0.70!7.68!ZNF587;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.25!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.92!RFX8;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.70!MECOM;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.74!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.68!4.25!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.67!425.33!EPAS1;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.05!HMGA2;;chr15:66994561..66994597,+!p2@SMAD6!0.66!9.48!SMAD6;;chr2:239756739..239756755,+!p2@TWIST2!0.66!6.54!TWIST2;;chr4:174451350..174451363,-!p3@HAND2!0.66!3.60!HAND2;;chr12:3069037..3069119,+!p2@TEAD4!0.65!13.57!TEAD4;;chr1:200008734..200008765,+!p2@NR5A2!0.65!3.43!NR5A2;;chr2:19558373..19558392,-!p1@OSR1!0.64!10.30!OSR1;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.21!CREB3L1;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.56!IFI16;;chr18:53255415..53255491,-!p1@TCF4!0.63!32.69!TCF4;;chr8:49833948..49833973,-!p2@SNAI2!0.63!24.52!SNAI2;;chr15:37392616..37392638,-!p2@MEIS2!0.63!11.61!MEIS2;;chr11:128563948..128564003,+!p1@FLI1!0.62!45.44!FLI1;;chr9:73029219..73029289,-!p2@KLF9!0.62!10.95!KLF9;;chr3:128206762..128206781,-!p2@GATA2!0.61!22.72!GATA2;;chr6:19837592..19837621,+!p1@ID4!0.61!22.23!ID4;;chr12:96588368..96588394,+!p3@ELK3!0.61!9.48!ELK3;;chr15:66994663..66994680,+!p1@SMAD6!0.61!8.17!SMAD6;;chr8:77593750..77593757,+!p3@ZFHX4!0.61!3.11!ZFHX4;;chr8:49833978..49833996,-!p1@SNAI2!0.60!75.36!SNAI2;;chr7:19157043..19157088,-!p2@TWIST1!0.60!8.66!TWIST1;;chr1:23696308..23696339,-!p2@ZNF436!0.60!7.19!ZNF436;;chr18:19749517..19749531,+!p3@GATA6!0.60!5.88!GATA6;;chr11:113930291..113930339,+!p2@ZBTB16!0.60!5.39!ZBTB16;;chr14:74256787..74256858,-!p6@C14orf43!0.60!2.94!C14orf43;;chr15:66995062..66995065,+!p8@SMAD6!0.60!2.94!SMAD6;;chr8:10588010..10588030,-!p1@SOX7!0.60!2.94!SOX7;;chr9:16870710..16870763,-!p1@BNC2!0.59!5.56!BNC2;;chr2:85980919..85980942,+!p4@ATOH8!0.59!3.11!ATOH8;;chr6:34204921..34204939,+!p3@HMGA1!0.58!103.47!HMGA1;;chr7:44143925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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor6.CNhs12061.11460-119B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11460-119B2
|id=FF:11460-119B2
|is_a=EFO:0002091;;FF:0000059
|is_a=EFO:0002091;;FF:0000059
|is_obsolete=
|is_obsolete=
|library_id=CNhs12061
|library_id_phase_based=2:CNhs12061
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11460
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11460
|name=Fibroblast - Cardiac, donor6
|name=Fibroblast - Cardiac, donor6
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12061,LSID838,release011,COMPLETED
|profile_hcage=CNhs12061,LSID838,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_catalog_number=SC6305
Line 58: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=fetal
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 79: Line 101:
|top_motifs=NKX2-2,8:1.10417249385;RXR{A,B,G}:1.06290978741;TLX1..3_NFIC{dimer}:1.03389285098;EVI1:1.03268474818;IKZF1:0.900095378962;FOX{I1,J2}:0.855693901681;GFI1:0.805377583584;AR:0.801499637301;UFEwm:0.792867560999;NKX3-1:0.791204528897;NR3C1:0.778670608916;TFAP4:0.765231381873;RXRA_VDR{dimer}:0.763397724305;POU3F1..4:0.716132809822;TFDP1:0.703140570838;POU1F1:0.692782918687;HOX{A5,B5}:0.677714686101;E2F1..5:0.674243070852;XCPE1{core}:0.661302793161;TOPORS:0.644142614052;ALX1:0.643540762777;CDC5L:0.621578713422;SMAD1..7,9:0.597268213646;SOX{8,9,10}:0.581499677339;MYB:0.577598690247;TEF:0.570008969874;TEAD1:0.546222160931;HSF1,2:0.531994678277;PAX5:0.525112529482;AIRE:0.507889593524;PBX1:0.503373845834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502097904583;XBP1:0.495304487014;ZNF238:0.479520313539;EN1,2:0.477584744905;GFI1B:0.466158323013;ALX4:0.458713121245;NFY{A,B,C}:0.447279239631;NFATC1..3:0.438325667997;STAT1,3:0.426861889511;SOX17:0.422920534327;LHX3,4:0.387414320336;ZNF143:0.386232264195;GTF2A1,2:0.384604971263;MYBL2:0.373629488038;TAL1_TCF{3,4,12}:0.371218162105;ARID5B:0.366266913093;HES1:0.355120477812;STAT5{A,B}:0.350098700474;MAZ:0.332122356015;NFIX:0.328388683959;EBF1:0.324839120075;GTF2I:0.320379605479;PAX8:0.316831506437;ZBTB16:0.304061464642;GATA4:0.297625295238;ONECUT1,2:0.297427790941;MZF1:0.289556926201;ELK1,4_GABP{A,B1}:0.284691225488;NANOG{mouse}:0.284224214565;EGR1..3:0.276637015201;ELF1,2,4:0.273891146255;TP53:0.271388839475;MTE{core}:0.263015297121;PITX1..3:0.253858403742;PAX4:0.244988361555;ZIC1..3:0.238696300359;RBPJ:0.238520090394;LEF1_TCF7_TCF7L1,2:0.229008634427;SOX2:0.227240599913;FOXP1:0.224835033948;HIC1:0.222125783322;HAND1,2:0.217198471316;PRDM1:0.214490681621;NFE2L2:0.205052190751;CRX:0.191707311811;KLF4:0.178339085832;PAX1,9:0.167819679459;GCM1,2:0.16010504993;STAT2,4,6:0.158595529777;GZF1:0.158376842597;TBX4,5:0.151766772571;GLI1..3:0.151298612947;PATZ1:0.143054093279;ADNP_IRX_SIX_ZHX:0.130893787726;HBP1_HMGB_SSRP1_UBTF:0.120158890305;YY1:0.116605370217;ZFP161:0.103132699184;NRF1:0.0806695148438;SPZ1:0.0803392703404;ZNF148:0.0721327110109;SP1:0.0625870600991;HMGA1,2:0.0591243457229;PAX3,7:0.0430209401416;BACH2:0.0376917066639;AHR_ARNT_ARNT2:0.0323140660345;GATA6:0.0145928597711;FOXD3:0.0117682985247;NKX6-1,2:0.0109087446039;SRF:0.0091954524829;HNF4A_NR2F1,2:-0.00104454928796;TFAP2{A,C}:-0.00225686961112;ETS1,2:-0.00643471933773;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00836629114239;REST:-0.0138410582057;NFE2L1:-0.0144773604384;CDX1,2,4:-0.0160450734555;HOX{A4,D4}:-0.0197073367386;DBP:-0.0207563755665;T:-0.0396896034182;HOXA9_MEIS1:-0.0474509123564;HNF1A:-0.0495824921718;FOS_FOS{B,L1}_JUN{B,D}:-0.0605534041631;TBP:-0.0707977151126;NR5A1,2:-0.0886390517392;ATF6:-0.0902020798223;bHLH_family:-0.0942860621887;NR1H4:-0.0956705870457;TFAP2B:-0.0967478133037;NKX2-1,4:-0.106865426918;NFE2:-0.119707632759;MED-1{core}:-0.124706582553;NHLH1,2:-0.135269183785;HLF:-0.152462210826;ZNF384:-0.153580892681;ZBTB6:-0.155116543912;SPI1:-0.176153236556;CREB1:-0.194732796565;MAFB:-0.211236933241;FOX{F1,F2,J1}:-0.213501795502;PRRX1,2:-0.226508737478;FOSL2:-0.236130277666;SPIB:-0.243708650006;BPTF:-0.252824677436;NR6A1:-0.253228609878;TFCP2:-0.255870474262;FOXP3:-0.256138506647;FOXQ1:-0.256206218145;NKX3-2:-0.289506526753;EP300:-0.300323541918;MYFfamily:-0.310211432962;SOX5:-0.327896393632;OCT4_SOX2{dimer}:-0.337785093418;PDX1:-0.348300208708;HMX1:-0.359866498588;IKZF2:-0.364123262694;MTF1:-0.371243920817;TLX2:-0.375472412289;IRF7:-0.37602917884;NFKB1_REL_RELA:-0.38443594775;RFX1:-0.390244610721;MEF2{A,B,C,D}:-0.393017784214;ESRRA:-0.39728578485;FOXA2:-0.39916035969;NANOG:-0.399861754542;POU2F1..3:-0.402378677814;PPARG:-0.409488579333;POU5F1:-0.421883059437;BREu{core}:-0.426471184581;CEBPA,B_DDIT3:-0.43765428536;TGIF1:-0.450138008336;CUX2:-0.458429178748;ZNF423:-0.464217428453;SREBF1,2:-0.465808619012;ATF4:-0.498056817446;JUN:-0.509413438339;ESR1:-0.520428686403;DMAP1_NCOR{1,2}_SMARC:-0.522805449047;HIF1A:-0.525096668084;FOXM1:-0.53734640333;PAX2:-0.550728552935;PAX6:-0.569547083714;FOXO1,3,4:-0.575276232304;FOX{D1,D2}:-0.580948793412;RUNX1..3:-0.608032795318;FOXL1:-0.618088260309;POU6F1:-0.620256285951;IRF1,2:-0.641289800377;LMO2:-0.700763273784;ATF2:-0.735387476804;RORA:-0.756214926613;RREB1:-0.761504188806;ATF5_CREB3:-0.809600445887;NFIL3:-0.809791091951;VSX1,2:-0.814936758164;SNAI1..3:-0.855587927495;NKX2-3_NKX2-5:-0.937476821842;RFX2..5_RFXANK_RFXAP:-0.941183221562;ZEB1:-0.960605914737;MYOD1:-1.00465335646;FOXN1:-1.00507330259;HOX{A6,A7,B6,B7}:-1.88772106497
|top_motifs=NKX2-2,8:1.10417249385;RXR{A,B,G}:1.06290978741;TLX1..3_NFIC{dimer}:1.03389285098;EVI1:1.03268474818;IKZF1:0.900095378962;FOX{I1,J2}:0.855693901681;GFI1:0.805377583584;AR:0.801499637301;UFEwm:0.792867560999;NKX3-1:0.791204528897;NR3C1:0.778670608916;TFAP4:0.765231381873;RXRA_VDR{dimer}:0.763397724305;POU3F1..4:0.716132809822;TFDP1:0.703140570838;POU1F1:0.692782918687;HOX{A5,B5}:0.677714686101;E2F1..5:0.674243070852;XCPE1{core}:0.661302793161;TOPORS:0.644142614052;ALX1:0.643540762777;CDC5L:0.621578713422;SMAD1..7,9:0.597268213646;SOX{8,9,10}:0.581499677339;MYB:0.577598690247;TEF:0.570008969874;TEAD1:0.546222160931;HSF1,2:0.531994678277;PAX5:0.525112529482;AIRE:0.507889593524;PBX1:0.503373845834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.502097904583;XBP1:0.495304487014;ZNF238:0.479520313539;EN1,2:0.477584744905;GFI1B:0.466158323013;ALX4:0.458713121245;NFY{A,B,C}:0.447279239631;NFATC1..3:0.438325667997;STAT1,3:0.426861889511;SOX17:0.422920534327;LHX3,4:0.387414320336;ZNF143:0.386232264195;GTF2A1,2:0.384604971263;MYBL2:0.373629488038;TAL1_TCF{3,4,12}:0.371218162105;ARID5B:0.366266913093;HES1:0.355120477812;STAT5{A,B}:0.350098700474;MAZ:0.332122356015;NFIX:0.328388683959;EBF1:0.324839120075;GTF2I:0.320379605479;PAX8:0.316831506437;ZBTB16:0.304061464642;GATA4:0.297625295238;ONECUT1,2:0.297427790941;MZF1:0.289556926201;ELK1,4_GABP{A,B1}:0.284691225488;NANOG{mouse}:0.284224214565;EGR1..3:0.276637015201;ELF1,2,4:0.273891146255;TP53:0.271388839475;MTE{core}:0.263015297121;PITX1..3:0.253858403742;PAX4:0.244988361555;ZIC1..3:0.238696300359;RBPJ:0.238520090394;LEF1_TCF7_TCF7L1,2:0.229008634427;SOX2:0.227240599913;FOXP1:0.224835033948;HIC1:0.222125783322;HAND1,2:0.217198471316;PRDM1:0.214490681621;NFE2L2:0.205052190751;CRX:0.191707311811;KLF4:0.178339085832;PAX1,9:0.167819679459;GCM1,2:0.16010504993;STAT2,4,6:0.158595529777;GZF1:0.158376842597;TBX4,5:0.151766772571;GLI1..3:0.151298612947;PATZ1:0.143054093279;ADNP_IRX_SIX_ZHX:0.130893787726;HBP1_HMGB_SSRP1_UBTF:0.120158890305;YY1:0.116605370217;ZFP161:0.103132699184;NRF1:0.0806695148438;SPZ1:0.0803392703404;ZNF148:0.0721327110109;SP1:0.0625870600991;HMGA1,2:0.0591243457229;PAX3,7:0.0430209401416;BACH2:0.0376917066639;AHR_ARNT_ARNT2:0.0323140660345;GATA6:0.0145928597711;FOXD3:0.0117682985247;NKX6-1,2:0.0109087446039;SRF:0.0091954524829;HNF4A_NR2F1,2:-0.00104454928796;TFAP2{A,C}:-0.00225686961112;ETS1,2:-0.00643471933773;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.00836629114239;REST:-0.0138410582057;NFE2L1:-0.0144773604384;CDX1,2,4:-0.0160450734555;HOX{A4,D4}:-0.0197073367386;DBP:-0.0207563755665;T:-0.0396896034182;HOXA9_MEIS1:-0.0474509123564;HNF1A:-0.0495824921718;FOS_FOS{B,L1}_JUN{B,D}:-0.0605534041631;TBP:-0.0707977151126;NR5A1,2:-0.0886390517392;ATF6:-0.0902020798223;bHLH_family:-0.0942860621887;NR1H4:-0.0956705870457;TFAP2B:-0.0967478133037;NKX2-1,4:-0.106865426918;NFE2:-0.119707632759;MED-1{core}:-0.124706582553;NHLH1,2:-0.135269183785;HLF:-0.152462210826;ZNF384:-0.153580892681;ZBTB6:-0.155116543912;SPI1:-0.176153236556;CREB1:-0.194732796565;MAFB:-0.211236933241;FOX{F1,F2,J1}:-0.213501795502;PRRX1,2:-0.226508737478;FOSL2:-0.236130277666;SPIB:-0.243708650006;BPTF:-0.252824677436;NR6A1:-0.253228609878;TFCP2:-0.255870474262;FOXP3:-0.256138506647;FOXQ1:-0.256206218145;NKX3-2:-0.289506526753;EP300:-0.300323541918;MYFfamily:-0.310211432962;SOX5:-0.327896393632;OCT4_SOX2{dimer}:-0.337785093418;PDX1:-0.348300208708;HMX1:-0.359866498588;IKZF2:-0.364123262694;MTF1:-0.371243920817;TLX2:-0.375472412289;IRF7:-0.37602917884;NFKB1_REL_RELA:-0.38443594775;RFX1:-0.390244610721;MEF2{A,B,C,D}:-0.393017784214;ESRRA:-0.39728578485;FOXA2:-0.39916035969;NANOG:-0.399861754542;POU2F1..3:-0.402378677814;PPARG:-0.409488579333;POU5F1:-0.421883059437;BREu{core}:-0.426471184581;CEBPA,B_DDIT3:-0.43765428536;TGIF1:-0.450138008336;CUX2:-0.458429178748;ZNF423:-0.464217428453;SREBF1,2:-0.465808619012;ATF4:-0.498056817446;JUN:-0.509413438339;ESR1:-0.520428686403;DMAP1_NCOR{1,2}_SMARC:-0.522805449047;HIF1A:-0.525096668084;FOXM1:-0.53734640333;PAX2:-0.550728552935;PAX6:-0.569547083714;FOXO1,3,4:-0.575276232304;FOX{D1,D2}:-0.580948793412;RUNX1..3:-0.608032795318;FOXL1:-0.618088260309;POU6F1:-0.620256285951;IRF1,2:-0.641289800377;LMO2:-0.700763273784;ATF2:-0.735387476804;RORA:-0.756214926613;RREB1:-0.761504188806;ATF5_CREB3:-0.809600445887;NFIL3:-0.809791091951;VSX1,2:-0.814936758164;SNAI1..3:-0.855587927495;NKX2-3_NKX2-5:-0.937476821842;RFX2..5_RFXANK_RFXAP:-0.941183221562;ZEB1:-0.960605914737;MYOD1:-1.00465335646;FOXN1:-1.00507330259;HOX{A6,A7,B6,B7}:-1.88772106497
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11460-119B2;search_select_hide=table117:FF:11460-119B2
}}
}}

Latest revision as of 18:02, 4 June 2020

Name:Fibroblast - Cardiac, donor6
Species:Human (Homo sapiens)
Library ID:CNhs12061
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2151
catalog numberSC6305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005402
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12061 CAGE DRX008248 DRR009120
Accession ID Hg19

Library idBAMCTSS
CNhs12061 DRZ000545 DRZ001930
Accession ID Hg38

Library idBAMCTSS
CNhs12061 DRZ011895 DRZ013280
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0758
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.363
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.331
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0116
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0937
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.284
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.297
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.176
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.366
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.313
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.123
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0658
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.363
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.378
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.218
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.692
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.331
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.647
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12061

Jaspar motifP-value
MA0002.20.00137
MA0003.10.509
MA0004.10.273
MA0006.10.237
MA0007.10.461
MA0009.10.569
MA0014.10.605
MA0017.10.0823
MA0018.20.00157
MA0019.10.869
MA0024.16.95738e-5
MA0025.15.42245e-4
MA0027.10.716
MA0028.10.0162
MA0029.10.338
MA0030.10.0927
MA0031.10.263
MA0035.20.858
MA0038.10.334
MA0039.20.576
MA0040.10.622
MA0041.10.857
MA0042.10.929
MA0043.11.3628e-4
MA0046.10.0178
MA0047.20.621
MA0048.10.00885
MA0050.10.00173
MA0051.10.00248
MA0052.10.00943
MA0055.10.00772
MA0057.10.986
MA0058.10.174
MA0059.10.55
MA0060.10.00202
MA0061.17.59442e-6
MA0062.20.65
MA0065.20.00203
MA0066.10.376
MA0067.10.0168
MA0068.10.0742
MA0069.10.984
MA0070.10.827
MA0071.10.896
MA0072.10.36
MA0073.10.733
MA0074.10.849
MA0076.10.117
MA0077.10.556
MA0078.10.771
MA0079.20.624
MA0080.29.85847e-7
MA0081.10.514
MA0083.10.573
MA0084.10.024
MA0087.10.19
MA0088.10.3
MA0090.10.105
MA0091.10.515
MA0092.10.974
MA0093.10.293
MA0099.20.0199
MA0100.10.368
MA0101.10.0181
MA0102.20.139
MA0103.12.79595e-6
MA0104.20.077
MA0105.15.77358e-5
MA0106.10.937
MA0107.12.57612e-4
MA0108.20.653
MA0111.10.955
MA0112.20.0948
MA0113.10.451
MA0114.10.0042
MA0115.10.241
MA0116.10.0409
MA0117.10.0829
MA0119.10.0873
MA0122.10.889
MA0124.10.575
MA0125.10.668
MA0131.10.479
MA0135.10.0236
MA0136.11.62524e-5
MA0137.20.179
MA0138.20.326
MA0139.10.0575
MA0140.10.486
MA0141.10.801
MA0142.10.221
MA0143.10.549
MA0144.10.351
MA0145.10.491
MA0146.10.631
MA0147.10.177
MA0148.10.747
MA0149.10.28
MA0150.10.138
MA0152.10.156
MA0153.10.351
MA0154.10.0259
MA0155.10.687
MA0156.10.2
MA0157.10.0723
MA0159.10.143
MA0160.10.0735
MA0162.10.523
MA0163.10.0771
MA0164.10.85
MA0258.10.0396
MA0259.10.537



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12061

Novel motifP-value
10.33
100.714
1000.824
1010.561
1020.451
1030.322
1040.852
1050.0736
1060.241
1070.759
1080.514
1090.508
110.62
1100.137
1110.0725
1120.236
1130.0712
1140.0775
1150.388
1160.408
1170.933
1180.374
1190.372
120.165
1200.183
1210.79
1220.0518
1230.0583
1240.19
1250.0988
1260.276
1270.209
1280.921
1290.39
130.666
1300.0669
1310.998
1320.408
1330.531
1340.534
1350.806
1360.236
1370.13
1380.525
1390.018
140.211
1400.886
1410.959
1420.0495
1430.396
1440.99
1450.561
1460.888
1470.428
1480.192
1490.473
150.178
1500.308
1510.273
1520.823
1530.462
1540.671
1550.00425
1560.916
1570.3
1580.00735
1590.146
160.988
1600.989
1610.633
1620.782
1630.396
1640.863
1650.17
1660.525
1670.182
1680.433
1690.715
170.548
180.187
190.442
20.904
200.753
210.235
220.622
230.289
240.866
250.112
260.444
270.625
280.245
290.436
30.954
300.978
310.512
320.00202
330.931
340.796
350.0903
360.0652
370.544
380.524
390.273
40.0596
400.00893
410.429
420.782
430.126
440.248
450.323
460.542
470.802
480.758
490.0893
50.326
500.497
510.484
520.45
530.281
540.55
550.551
560.457
570.966
580.0725
590.427
60.942
600.0956
610.54
620.12
630.858
640.599
650.37
660.476
670.816
680.465
690.73
70.235
700.0186
710.388
720.553
730.279
740.967
750.276
760.879
770.991
780.673
790.111
80.922
800.266
810.29
820.0362
830.54
840.782
850.1
860.843
870.014
880.58
890.637
90.727
900.605
910.988
920.769
930.566
940.0626
950.637
960.451
970.516
980.0484
990.0313



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12061


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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