FF:11789-124B7: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD14+CD16+ Monocytes, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13541
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	7
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005543

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13541		CAGE		DRX008162		DRR009034

Accession ID Hg19

Library id		BAM		CTSS
CNhs13541		DRZ000459		DRZ001844

Accession ID Hg38

Library id		BAM		CTSS
CNhs13541		DRZ011809		DRZ013194

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0832
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.309
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0832
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.153
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0832
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.495
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.108
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.266
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.0832
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.442
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.247
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.913
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0832
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.213
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0642
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.153
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0762
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.544
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.882
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.578
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.521
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.663
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.476
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.213
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.596
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0832
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.18
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.464
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.398
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.735
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.129
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0832
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.394
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.026
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.548
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.493
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.0832
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0832
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.052
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.213
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.266
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.768
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13541

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.49857e-9
MA0003.1	MA0003.1	0.0473
MA0004.1	MA0004.1	0.353
MA0006.1	MA0006.1	0.9
MA0007.1	MA0007.1	0.883
MA0009.1	MA0009.1	0.407
MA0014.1	MA0014.1	0.546
MA0017.1	MA0017.1	0.00653
MA0018.2	MA0018.2	0.0693
MA0019.1	MA0019.1	0.802
MA0024.1	MA0024.1	0.00538
MA0025.1	MA0025.1	0.00283
MA0027.1	MA0027.1	0.756
MA0028.1	MA0028.1	0.657
MA0029.1	MA0029.1	0.138
MA0030.1	MA0030.1	0.385
MA0031.1	MA0031.1	0.834
MA0035.2	MA0035.2	0.697
MA0038.1	MA0038.1	0.169
MA0039.2	MA0039.2	0.575
MA0040.1	MA0040.1	0.152
MA0041.1	MA0041.1	0.421
MA0042.1	MA0042.1	0.0802
MA0043.1	MA0043.1	3.89752e-4
MA0046.1	MA0046.1	0.0571
MA0047.2	MA0047.2	0.222
MA0048.1	MA0048.1	0.947
MA0050.1	MA0050.1	1.08004e-11
MA0051.1	MA0051.1	5.18284e-6
MA0052.1	MA0052.1	0.154
MA0055.1	MA0055.1	0.801
MA0057.1	MA0057.1	0.945
MA0058.1	MA0058.1	0.226
MA0059.1	MA0059.1	0.342
MA0060.1	MA0060.1	9.52541e-7
MA0061.1	MA0061.1	2.29714e-5
MA0062.2	MA0062.2	9.26628e-4
MA0065.2	MA0065.2	0.00825
MA0066.1	MA0066.1	0.0423
MA0067.1	MA0067.1	5.81292e-4
MA0068.1	MA0068.1	0.23
MA0069.1	MA0069.1	0.855
MA0070.1	MA0070.1	0.00789
MA0071.1	MA0071.1	0.114
MA0072.1	MA0072.1	0.78
MA0073.1	MA0073.1	0.317
MA0074.1	MA0074.1	0.331
MA0076.1	MA0076.1	0.736
MA0077.1	MA0077.1	0.0662
MA0078.1	MA0078.1	0.886
MA0079.2	MA0079.2	0.509
MA0080.2	MA0080.2	8.73293e-16
MA0081.1	MA0081.1	1.4373e-4
MA0083.1	MA0083.1	0.457
MA0084.1	MA0084.1	0.384
MA0087.1	MA0087.1	0.43
MA0088.1	MA0088.1	0.567
MA0090.1	MA0090.1	0.04
MA0091.1	MA0091.1	0.392
MA0092.1	MA0092.1	0.439
MA0093.1	MA0093.1	0.405
MA0099.2	MA0099.2	7.54705e-8
MA0100.1	MA0100.1	0.867
MA0101.1	MA0101.1	1.27021e-4
MA0102.2	MA0102.2	4.17424e-8
MA0103.1	MA0103.1	0.269
MA0104.2	MA0104.2	0.267
MA0105.1	MA0105.1	1.58763e-7
MA0106.1	MA0106.1	0.75
MA0107.1	MA0107.1	7.98858e-6
MA0108.2	MA0108.2	4.72456e-6
MA0111.1	MA0111.1	0.351
MA0112.2	MA0112.2	1.73873e-4
MA0113.1	MA0113.1	0.785
MA0114.1	MA0114.1	0.0914
MA0115.1	MA0115.1	0.603
MA0116.1	MA0116.1	7.42014e-5
MA0117.1	MA0117.1	0.275
MA0119.1	MA0119.1	0.386
MA0122.1	MA0122.1	0.783
MA0124.1	MA0124.1	0.486
MA0125.1	MA0125.1	0.235
MA0131.1	MA0131.1	0.879
MA0135.1	MA0135.1	0.374
MA0136.1	MA0136.1	4.97064e-19
MA0137.2	MA0137.2	0.579
MA0138.2	MA0138.2	0.97
MA0139.1	MA0139.1	0.639
MA0140.1	MA0140.1	0.828
MA0141.1	MA0141.1	0.0141
MA0142.1	MA0142.1	0.595
MA0143.1	MA0143.1	0.916
MA0144.1	MA0144.1	0.332
MA0145.1	MA0145.1	0.193
MA0146.1	MA0146.1	0.0622
MA0147.1	MA0147.1	0.306
MA0148.1	MA0148.1	0.49
MA0149.1	MA0149.1	0.0566
MA0150.1	MA0150.1	2.34119e-4
MA0152.1	MA0152.1	0.0957
MA0153.1	MA0153.1	0.00578
MA0154.1	MA0154.1	0.00116
MA0155.1	MA0155.1	0.718
MA0156.1	MA0156.1	9.60269e-12
MA0157.1	MA0157.1	0.485
MA0159.1	MA0159.1	0.0291
MA0160.1	MA0160.1	0.00812
MA0162.1	MA0162.1	0.514
MA0163.1	MA0163.1	3.68601e-11
MA0164.1	MA0164.1	0.981
MA0258.1	MA0258.1	0.00741
MA0259.1	MA0259.1	0.911

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13541

Novel motif	Logo	P-value
1	1	0.108
10	10	0.0307
100	100	0.97
101	101	0.628
102	102	0.55
103	103	0.131
104	104	0.521
105	105	0.142
106	106	0.0104
107	107	0.545
108	108	0.723
109	109	0.0456
11	11	0.156
110	110	0.29
111	111	0.0359
112	112	0.145
113	113	0.654
114	114	0.0112
115	115	0.179
116	116	0.986
117	117	0.0545
118	118	0.0963
119	119	0.289
12	12	0.37
120	120	0.516
121	121	0.759
122	122	0.657
123	123	0.0697
124	124	0.5
125	125	0.138
126	126	0.104
127	127	0.294
128	128	0.0873
129	129	0.785
13	13	0.0941
130	130	0.429
131	131	0.949
132	132	0.0309
133	133	0.345
134	134	0.668
135	135	0.0544
136	136	0.83
137	137	2.0407e-4
138	138	0.186
139	139	0.0274
14	14	0.44
140	140	0.166
141	141	0.448
142	142	0.66
143	143	0.0308
144	144	0.771
145	145	0.523
146	146	0.974
147	147	0.451
148	148	0.0233
149	149	0.644
15	15	0.098
150	150	0.665
151	151	0.275
152	152	0.288
153	153	0.591
154	154	0.94
155	155	0.238
156	156	0.95
157	157	0.844
158	158	0.17
159	159	0.41
16	16	0.377
160	160	0.432
161	161	0.45
162	162	0.312
163	163	0.959
164	164	0.104
165	165	0.0554
166	166	0.547
167	167	0.177
168	168	0.352
169	169	0.0109
17	17	0.281
18	18	0.147
19	19	0.243
2	2	0.827
20	20	0.56
21	21	0.589
22	22	0.196
23	23	0.156
24	24	0.209
25	25	0.161
26	26	0.0425
27	27	0.423
28	28	0.588
29	29	0.0751
3	3	0.0959
30	30	0.502
31	31	0.658
32	32	0.831
33	33	0.18
34	34	0.49
35	35	0.172
36	36	0.0511
37	37	0.0682
38	38	0.434
39	39	0.835
4	4	0.985
40	40	0.11
41	41	0.0262
42	42	0.301
43	43	0.0667
44	44	0.538
45	45	0.815
46	46	0.115
47	47	0.399
48	48	0.38
49	49	0.119
5	5	0.114
50	50	0.944
51	51	0.324
52	52	0.432
53	53	0.376
54	54	0.461
55	55	0.571
56	56	0.772
57	57	0.803
58	58	0.0504
59	59	0.0916
6	6	0.758
60	60	0.0514
61	61	0.235
62	62	0.015
63	63	0.503
64	64	0.294
65	65	0.255
66	66	0.231
67	67	0.476
68	68	0.991
69	69	0.955
7	7	0.144
70	70	0.0195
71	71	0.0322
72	72	0.205
73	73	0.147
74	74	0.146
75	75	0.0545
76	76	0.261
77	77	0.474
78	78	0.185
79	79	0.217
8	8	0.324
80	80	0.211
81	81	0.201
82	82	0.126
83	83	0.332
84	84	0.791
85	85	0.0243
86	86	0.125
87	87	0.24
88	88	0.576
89	89	0.373
9	9	0.242
90	90	0.0739
91	91	0.26
92	92	0.31
93	93	0.452
94	94	0.0195
95	95	0.0759
96	96	0.331
97	97	0.923
98	98	0.111
99	99	0.0742

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13541

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011112 CD14-positiveCD16-positive Monocytes

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011112 (CD14-positiveCD16-positive Monocytes)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005543
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0002393,CL:0000566,CL:0002397,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008162;DRR009034;DRZ000459;DRZ001844;DRZ011809;DRZ013194
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011112
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.73!533.21!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.58!376.03!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!2.22!166.68!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!2.19!153.58!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!1.95!87.25!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.93!83.66!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.83!67.18!ZNF385A;;chr14:75745523..75745537,+!p1@FOS!1.81!7080.85!FOS;;chr11:47399947..47399961,-!p3@SPI1!1.80!61.48!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.71!567.64!MAFB;;chr2:145277640..145277771,-!p1@ZEB2!1.65!549.69!ZEB2;;chr7:115670804..115670825,-!p1@TFEC!1.60!38.45!TFEC;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.55!SPI1;;chrX:106960180..106960197,-!p2@TSC22D3!1.56!131.19!TSC22D3;;chr11:47399996..47400014,-!p4@SPI1!1.56!35.07!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.53!241.68!MEF2C;;chr19:13213662..13213686,-!p1@LYL1!1.53!47.74!LYL1;;chr7:128577972..128578047,+!p1@IRF5!1.51!48.59!IRF5;;chr2:145271342..145271377,-!p5@ZEB2!1.51!31.69!ZEB2;;chr5:176735063..176735088,-!p2@MXD3!1.49!29.79!MXD3;;chr11:47400045..47400060,-!p6@SPI1!1.47!28.31!SPI1;;chr12:54694758..54694805,-!p1@NFE2!1.44!32.32!NFE2;;chr19:33793430..33793447,-!p1@CEBPA!1.41!101.61!CEBPA;;chr21:34442439..34442455,+!p1@OLIG1!1.41!24.93!OLIG1;;chr7:50343634..50343717,+!p2@IKZF1!1.39!23.66!IKZF1;;chr11:47399920..47399931,-!p7@SPI1!1.36!21.76!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.35!21.34!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!1.34!117.88!NCOA4;;chr12:52445218..52445237,+!p1@NR4A1!1.32!246.11!NR4A1;;chr20:48807456..48807475,+!p3@CEBPB!1.32!37.60!CEBPB;;chr6:144385698..144385742,-!p2@PLAGL1!1.31!23.66!PLAGL1;;chr1:212873084..212873137,-!p2@BATF3!1.30!19.01!BATF3;;chr19:45971246..45971265,+!p1@FOSB!1.29!335.68!FOSB;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.80!RUNX3;;chr19:12902289..12902307,+!p1@JUNB!1.27!3925.97!JUNB;;chr12:72056800..72056834,+!p1@THAP2!1.26!23.24!THAP2;;chr9:110250697..110250738,-!p2@KLF4!1.26!20.07!KLF4;;chr14:75746722..75746777,+!p2@FOS!1.25!21.34!FOS;;chr19:16435625..16435682,+!p1@KLF2!1.24!509.34!KLF2;;chr9:110252035..110252057,-!p1@KLF4!1.24!254.77!KLF4;;chr11:128563948..128564003,+!p1@FLI1!1.21!181.47!FLI1;;chr14:35872453..35872485,-!p2@NFKBIA!1.19!35.49!NFKBIA;;chr2:28618532..28618610,+!p4@FOSL2!1.19!24.72!FOSL2;;chr4:185395633..185395651,-!p2@IRF2!1.19!23.24!IRF2;;chrX:106960221..106960236,-!p3@TSC22D3!1.18!38.66!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.18!14.15!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.17!13.94!SP140;;chr10:94449703..94449718,+!p1@HHEX!1.16!51.76!HHEX;;chr2:157189180..157189290,-!p1@NR4A2!1.15!68.66!NR4A2;;chr14:35872962..35873025,-!p3@NFKBIA!1.15!32.96!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.13!643.48!NFKBIZ;;chr13:41593425..41593480,-!p1@ELF1!1.13!80.07!ELF1;;chr4:185395590..185395627,-!p3@IRF2!1.12!15.21!IRF2;;chr10:114710098..114710130,+!p2@TCF7L2!1.11!90.21!TCF7L2;;chr19:42636586..42636607,-!p1@POU2F2!1.10!32.53!POU2F2;;chr10:114709999..114710031,+!p1@TCF7L2!1.09!270.41!TCF7L2;;chr10:3827371..3827386,-!p2@KLF6!1.09!95.06!KLF6;;chr6:106534192..106534224,+!p1@PRDM1!1.09!32.11!PRDM1;;chr21:34442540..34442560,+!p2@OLIG1!1.09!11.20!OLIG1;;chr2:70142232..70142251,+!p1@MXD1!1.08!62.53!MXD1;;chr10:35416142..35416169,+!p3@CREM!1.07!28.73!CREM;;chr7:50344251..50344288,+!p3@IKZF1!1.07!10.77!IKZF1;;chr5:88179017..88179046,-!p2@MEF2C!1.06!42.67!MEF2C;;chr20:48807430..48807439,+!p8@CEBPB!1.05!15.63!CEBPB;;chr2:208031943..208031978,-!p5@KLF7!1.04!13.52!KLF7;;chr2:238600933..238600985,+!p3@LRRFIP1!1.03!53.45!LRRFIP1;;chr9:102584262..102584276,+!p1@NR4A3!1.03!21.97!NR4A3;;chr12:72056773..72056796,+!p3@THAP2!1.01!12.04!THAP2;;chr6:391743..391759,+!p1@IRF4!1.01!9.30!IRF4;;chr16:31885093..31885165,+!p1@ZNF267!0.99!138.58!ZNF267;;chr4:106068026..106068084,+!p1@TET2!0.99!80.28!TET2;;chr2:61108695..61108753,+!p1@REL!0.99!61.69!REL;;chr21:30671690..30671762,+!p2@BACH1!0.99!30.42!BACH1;;chr9:110252074..110252079,-!p3@KLF4!0.99!14.58!KLF4;;chr1:212873061..212873080,-!p4@BATF3!0.99!8.66!BATF3;;chr14:35873947..35873965,-!p1@NFKBIA!0.98!556.02!NFKBIA;;chr5:131826457..131826514,-!p1@IRF1!0.98!345.61!IRF1;;chr10:64576105..64576133,-!p1@EGR2!0.98!17.75!EGR2;;chr6:44233252..44233296,-!p1@NFKBIE!0.97!83.87!NFKBIE;;chrX:106960249..106960260,-!p5@TSC22D3!0.97!13.52!TSC22D3;;chr1:25256439..25256476,-!p3@RUNX3!0.97!8.24!RUNX3;;chr17:38498594..38498661,+!p2@RARA!0.96!27.89!RARA;;chr9:117150254..117150271,-!p1@AKNA!0.96!22.60!AKNA;;chr6:106534230..106534254,+!p2@PRDM1!0.96!21.13!PRDM1;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.99!KLF4;;chr8:37553292..37553317,+!p1@ZNF703!0.95!194.99!ZNF703;;chr17:38497662..38497713,+!p4@RARA!0.95!9.30!RARA;;chr10:104154415..104154434,+!p5@NFKB2!0.95!7.82!NFKB2;;chrX:106960285..106960299,-!p1@TSC22D3!0.93!207.88!TSC22D3;;chr19:45579725..45579743,-!p1@ZNF296!0.93!34.86!ZNF296;;chr4:185395191..185395226,-!p4@IRF2!0.93!10.56!IRF2;;chr17:38498402..38498445,+!p3@RARA!0.92!27.46!RARA;;chr2:145277882..145277967,-!p3@ZEB2!0.92!13.10!ZEB2;;chr4:38665810..38665827,+!p1@KLF3!0.91!108.37!KLF3;;chrX:129244454..129244488,-!p1@ELF4!0.91!53.24!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!0.91!45.84!NFKB2;;chr8:71316428..71316459,-!p2@NCOA2!0.91!12.25!NCOA2;;chrY:2803415..2803468,+!p1@ZFY!0.91!7.18!ZFY;;chr2:238600998..238601013,+!p5@LRRFIP1!0.91!7.18!LRRFIP1;;chr20:56195474..56195506,-!p1@ZBP1!0.91!7.18!ZBP1;;chr7:77428066..77428132,+!p2@PHTF2!0.90!46.48!PHTF2;;chr2:208394817..208394834,+!p3@CREB1!0.90!29.36!CREB1;;chr2:157198916..157198978,-!p2@NR4A2!0.90!25.35!NR4A2;;chr2:231084659..231084721,-!p1@SP110!0.89!164.57!SP110;;chr6:44355499..44355514,+!p3@CDC5L!0.89!7.39!CDC5L;;chr20:48807351..48807384,+!p1@CEBPB!0.88!717.85!CEBPB;;chr10:94449675..94449694,+!p2@HHEX!0.88!18.38!HHEX;;chr20:48807615..48807644,+!p6@CEBPB!0.88!11.20!CEBPB;;chr12:72056749..72056767,+!p6@THAP2!0.88!7.39!THAP2;;chr1:158979872..158979898,+!p3@IFI16!0.87!20.91!IFI16;;chr9:137217986..137218049,+!p3@RXRA!0.87!19.22!RXRA;;chr13:41593392..41593403,-!p7@ELF1!0.87!6.34!ELF1;;chr14:75747250..75747267,+!p5@FOS!0.87!6.34!FOS;;chr14:45722360..45722415,-!p1@MIS18BP1!0.86!102.67!MIS18BP1;;chr11:615942..615957,-!p1@IRF7!0.86!62.53!IRF7;;chr14:64971288..64971316,-!p2@ZBTB25!0.86!20.07!ZBTB25;;chr4:38665769..38665801,+!p2@KLF3!0.85!58.73!KLF3;;chr20:48807648..48807671,+!p9@CEBPB!0.85!9.08!CEBPB;;chr19:45251395..45251432,+!p8@BCL3!0.85!6.13!BCL3;;chr1:40367530..40367597,-!p1@MYCL1!0.84!11.20!MYCL1;;chr3:101546827..101546847,+!p2@NFKBIZ!0.84!8.66!NFKBIZ;;chr14:75988771..75988826,+!p1@BATF!0.84!8.03!BATF;;chr19:13213954..13214021,-!p4@LYL1!0.84!5.92!LYL1;;chr2:8822176..8822196,+!p1@ID2!0.83!866.99!ID2;;chr8:48650715..48650735,-!p1@CEBPD!0.82!774.88!CEBPD;;chr20:48807875..48807982,+!p2@CEBPB!0.82!133.94!CEBPB;;chr8:48650697..48650708,-!p2@CEBPD!0.81!45.00!CEBPD;;chr2:208031542..208031595,-!p2@KLF7!0.81!41.41!KLF7;;chr7:149470641..149470694,-!p1@ZNF467!0.81!26.83!ZNF467;;chr12:54694807..54694832,-!p3@NFE2!0.81!5.49!NFE2;;chr3:39195075..39195088,-!p1@CSRNP1!0.80!36.12!CSRNP1;;chr2:60780607..60780624,-!p2@BCL11A!0.80!17.32!BCL11A;;chr2:185463247..185463263,+!p1@ZNF804A!0.80!9.72!ZNF804A;;chr9:102584241..102584261,+!p4@NR4A3!0.80!8.45!NR4A3;;chr4:83822199..83822239,+!p2@THAP9!0.80!6.55!THAP9;;chr13:41593405..41593416,-!p9@ELF1!0.80!5.28!ELF1;;chr2:10183651..10183713,+!p1@KLF11!0.78!40.14!KLF11;;chr2:60780753..60780800,-!p1@BCL11A!0.78!26.83!BCL11A;;chr19:12075844..12075880,+!p3@ZNF763!0.78!8.87!ZNF763;;chr9:88969287..88969297,-!p3@ZCCHC6!0.78!6.97!ZCCHC6;;chr14:75746340..75746368,+!p3@FOS!0.78!5.07!FOS;;chr9:88969303..88969335,-!p1@ZCCHC6!0.77!49.86!ZCCHC6;;chr10:104155480..104155534,+!p2@NFKB2!0.77!35.07!NFKB2;;chr1:156470515..156470542,-!p2@MEF2D!0.77!27.89!MEF2D;;chr5:142782823..142782854,-!p3@NR3C1!0.77!7.18!NR3C1;;chr6:170862932..170862947,+!p5@TBP!0.77!4.86!TBP;;chr7:137620684..137620711,-!p4@CREB3L2!0.77!4.86!CREB3L2;;chr19:54041669..54041697,+!p2@ZNF331!0.77!4.86!ZNF331;;chr12:54694653..54694672,-!p2@NFE2!0.77!4.86!NFE2;;chr14:75746781..75746799,+!p6@FOS!0.77!4.86!FOS;;chr2:231090471..231090504,+!p2@SP140!0.77!4.86!SP140;;chr10:51572339..51572376,+!p4@NCOA4!0.76!11.41!NCOA4;;chr10:43932296..43932360,+!p1@ZNF487P!0.76!10.56!ZNF487P;;chr19:36391434..36391450,-!p1@NFKBID!0.76!9.93!NFKBID;;chr21:30671235..30671253,+!p1@BACH1!0.75!65.07!BACH1;;chr21:36421535..36421610,-!p2@RUNX1!0.75!17.96!RUNX1;;chr1:161014760..161014788,-!p4@USF1!0.75!4.65!USF1;;chr20:56195525..56195556,-!p2@ZBP1!0.75!4.65!ZBP1;;chr11:2292226..2292270,-!p1@ASCL2!0.75!4.65!ASCL2;;chr3:101575889..101575903,+!p3@NFKBIZ!0.75!4.65!NFKBIZ;;chr12:57914286..57914304,-!p1@DDIT3!0.74!184.00!DDIT3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.74!38.45!ZCCHC6;;chrX:129244840..129244881,-!p2@ELF4!0.74!19.01!ELF4;;chr10:114710060..114710069,+!p5@TCF7L2!0.74!8.03!TCF7L2;;chr2:231090344..231090361,-!p3@SP110!0.74!4.44!SP110;;chr4:103423079..103423112,+!p4@NFKB1!0.74!4.44!NFKB1;;chr2:97202480..97202499,+!p1@ARID5A!0.73!49.86!ARID5A;;chrX:131623044..131623089,-!p1@MBNL3!0.73!19.86!MBNL3;;chr5:88179195..88179224,-!p3@MEF2C!0.73!7.39!MEF2C;;chr3:39195037..39195069,-!p2@CSRNP1!0.72!29.79!CSRNP1;;chr6:12011943..12012015,+!p2@HIVEP1!0.72!15.00!HIVEP1;;chr16:3313791..3313834,+!p2@ZNF263!0.72!10.14!ZNF263;;chr10:31288398..31288455,-!p2@ZNF438!0.72!5.07!ZNF438;;chr10:135044190..135044229,+!p3@UTF1!0.72!4.23!UTF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.72!4.23!CREB3L2;;chr19:49140609..49140643,-!p1@DBP!0.71!25.98!DBP;;chr19:13213704..13213726,-!p3@LYL1!0.71!5.70!LYL1;;chr5:172483347..172483407,+!p1@C5orf41!0.70!34.22!CREBRF;;chr14:35872494..35872511,-!p5@NFKBIA!0.70!5.49!NFKBIA;;chr5:142782862..142782881,-!p11@NR3C1!0.70!4.01!NR3C1;;chrX:70712265..70712303,+!p4@TAF1!0.70!4.01!TAF1;;chr2:145277589..145277612,-!p12@ZEB2!0.70!4.01!ZEB2;;chr2:61108878..61108891,+!p5@REL!0.70!4.01!REL;;chr15:90544182..90544195,+!p7@ZNF710!0.70!4.01!ZNF710;;chr2:28615716..28615733,+!p1@FOSL2!0.69!210.41!FOSL2;;chr6:15246261..15246312,+!p1@JAR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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor1.CNhs13541.11789-124B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor1.CNhs13541.11789-124B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor1.CNhs13541.11789-124B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor1.CNhs13541.11789-124B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor1.CNhs13541.11789-124B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11789-124B7
 |is_a=EFO:0002091;;FF:0011112
 |is_obsolete=
+|library_id=CNhs13541
+|library_id_phase_based=2:CNhs13541
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11789
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11789
 |name=CD14+CD16+ Monocytes, donor1
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13541,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=1.402
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFIL3:2.60166279186;SPIB:2.5232874709;SPI1:2.45612453577;HMX1:2.31256268829;IRF1,2:2.19383109203;ETS1,2:1.98884722113;NANOG{mouse}:1.88834892823;DMAP1_NCOR{1,2}_SMARC:1.84919370703;PAX2:1.81475259547;ATF5_CREB3:1.76919393898;IRF7:1.73814399392;EP300:1.67383904028;RUNX1..3:1.52255761964;TGIF1:1.5202980836;ELF1,2,4:1.51447135395;RFX2..5_RFXANK_RFXAP:1.51232765838;NFKB1_REL_RELA:1.40585376384;MAFB:1.40479151803;SREBF1,2:1.28062550126;ATF4:1.16662306631;CEBPA,B_DDIT3:1.14455445315;ESRRA:1.12695482632;FOXN1:1.09391182942;TLX2:1.0863375063;CREB1:0.99001472441;HES1:0.930763029795;HIF1A:0.895510789157;GLI1..3:0.872344218151;HLF:0.81128747237;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.797383896935;FOXO1,3,4:0.715117329372;NR6A1:0.70013580694;FOSL2:0.677764012327;ALX4:0.632280349298;TAL1_TCF{3,4,12}:0.5971550718;RXRA_VDR{dimer}:0.576677523051;HMGA1,2:0.567918354842;FOX{D1,D2}:0.562533714752;BACH2:0.535197130839;FOX{F1,F2,J1}:0.516958916905;ESR1:0.508790196298;JUN:0.508103438813;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.499638040917;FOXP3:0.477472664446;CDX1,2,4:0.474844986616;FOX{I1,J2}:0.474389603281;NFE2L2:0.380547078804;FOS_FOS{B,L1}_JUN{B,D}:0.376347999624;NFE2L1:0.370698503713;PAX8:0.366183265782;NR1H4:0.333967348814;STAT2,4,6:0.315095778395;FOXA2:0.314710875219;PAX3,7:0.305242723487;HOXA9_MEIS1:0.273654902708;BPTF:0.254955460703;NFE2:0.203247073232;RBPJ:0.160347946816;ATF2:0.153345699896;ALX1:0.1499282677;ATF6:0.140942582497;NR5A1,2:0.133617334095;MEF2{A,B,C,D}:0.124407738857;AHR_ARNT_ARNT2:0.0983415941465;HSF1,2:0.0938533320064;HNF4A_NR2F1,2:0.0565258217387;HBP1_HMGB_SSRP1_UBTF:0.0460061511538;OCT4_SOX2{dimer}:0.0285515817325;TFCP2:0.0145284454101;HOX{A5,B5}:0.00879436767336;GATA4:0.00132667124126;TFAP4:-0.0278648363564;EBF1:-0.0491524280553;FOXQ1:-0.0753649073745;T:-0.076085855361;GATA6:-0.120027537258;EN1,2:-0.168736241513;POU5F1:-0.183501145039;NANOG:-0.187767757476;ZNF148:-0.188849092423;RORA:-0.193603533239;PPARG:-0.203896747431;STAT1,3:-0.249646101846;VSX1,2:-0.303375736827;MYB:-0.308554977391;ELK1,4_GABP{A,B1}:-0.312042812009;NKX2-2,8:-0.380640160931;RFX1:-0.415052042887;XBP1:-0.438139133054;MYFfamily:-0.44333122381;SRF:-0.446800278804;SOX2:-0.448222452224;PRRX1,2:-0.452528979392;RXR{A,B,G}:-0.455524046557;CRX:-0.45860621769;NFIX:-0.474800685641;MYOD1:-0.485591076525;SPZ1:-0.539067477065;NKX2-3_NKX2-5:-0.555995347931;CUX2:-0.605856429096;NHLH1,2:-0.610182354862;PAX4:-0.636520414922;MTF1:-0.65415035055;FOXD3:-0.659587811041;GZF1:-0.672625349831;IKZF2:-0.673175261247;STAT5{A,B}:-0.687894722044;PBX1:-0.694403056784;PAX1,9:-0.705845262262;ZEB1:-0.719536489496;POU2F1..3:-0.720352299068;HNF1A:-0.756586406283;ZBTB16:-0.763319112878;REST:-0.764366475428;IKZF1:-0.792574578507;FOXP1:-0.805548310269;ARID5B:-0.832188581855;DBP:-0.859561901772;BREu{core}:-0.875490233303;NKX3-2:-0.897107758451;TOPORS:-0.901991133394;TFAP2{A,C}:-0.905233067798;NKX3-1:-0.909728036076;PRDM1:-0.918526731453;SMAD1..7,9:-0.946427386134;NFATC1..3:-0.959198007746;HOX{A6,A7,B6,B7}:-0.97124258102;KLF4:-0.976242722446;GCM1,2:-1.01633756252;PAX5:-1.01851457927;LEF1_TCF7_TCF7L1,2:-1.01972836153;NFY{A,B,C}:-1.02281082176;AR:-1.02472447681;EGR1..3:-1.03464018733;SOX{8,9,10}:-1.03613006292;E2F1..5:-1.03622264155;ZNF238:-1.0606096116;PDX1:-1.07723150414;POU1F1:-1.09454188264;PATZ1:-1.12927291651;YY1:-1.12980246109;FOXL1:-1.1325055229;SNAI1..3:-1.14403286423;LHX3,4:-1.15133933789;SOX5:-1.15307412634;PAX6:-1.16640968808;MZF1:-1.16899052828;TBP:-1.18797315529;HOX{A4,D4}:-1.20466265625;ZNF423:-1.22288472028;HAND1,2:-1.22568441542;MTE{core}:-1.24423429918;ZFP161:-1.26652981713;PITX1..3:-1.28067068894;RREB1:-1.2943325892;NR3C1:-1.29636822522;CDC5L:-1.29908297785;MYBL2:-1.31074639283;TLX1..3_NFIC{dimer}:-1.31415000151;AIRE:-1.31616340865;HIC1:-1.32035444275;MED-1{core}:-1.3222909424;NKX6-1,2:-1.32768071414;NRF1:-1.33991655217;TFAP2B:-1.37833772079;SP1:-1.37865642523;bHLH_family:-1.38660289698;UFEwm:-1.38936664642;GFI1B:-1.39533504753;ZIC1..3:-1.4210646026;LMO2:-1.42272990184;ONECUT1,2:-1.442355927;NKX2-1,4:-1.44350124882;ZBTB6:-1.44986565709;TP53:-1.45256805554;TBX4,5:-1.46772715396;MAZ:-1.48712357535;GTF2I:-1.50195745495;FOXM1:-1.55163016038;TEAD1:-1.55579074719;ZNF384:-1.55737116221;ADNP_IRX_SIX_ZHX:-1.59521993441;GFI1:-1.62080884202;TEF:-1.63144683435;GTF2A1,2:-1.66491749111;ZNF143:-1.68807866433;TFDP1:-1.77440430686;XCPE1{core}:-1.81074986673;EVI1:-1.89494724167;POU6F1:-1.90873664552;SOX17:-2.19882584429;POU3F1..4:-3.07152561382
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11789-124B7;search_select_hide=table117:FF:11789-124B7
 }}

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FF:11789-124B7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0