FF:11790-124B8: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD14-CD16+ Monocytes, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13229
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005226

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13229		CAGE		DRX008049		DRR008921

Accession ID Hg19

Library id		BAM		CTSS
CNhs13229		DRZ000346		DRZ001731

Accession ID Hg38

Library id		BAM		CTSS
CNhs13229		DRZ011696		DRZ013081

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.338
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.147
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.109
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.109
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.33
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.22
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.196
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.5
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.262
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.358
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.433
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.196
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.165
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.257
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.109
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.428
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.192
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.883
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.268
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.258
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.616
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.551
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.185
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0489
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.546
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.637
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.432
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.616
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.141
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.496
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.156
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.33
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.561
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.196
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.196
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	1.098
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13229

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.51085e-8
MA0003.1	MA0003.1	0.0853
MA0004.1	MA0004.1	0.318
MA0006.1	MA0006.1	0.952
MA0007.1	MA0007.1	0.84
MA0009.1	MA0009.1	0.427
MA0014.1	MA0014.1	0.418
MA0017.1	MA0017.1	0.013
MA0018.2	MA0018.2	4.91465e-4
MA0019.1	MA0019.1	0.57
MA0024.1	MA0024.1	0.0193
MA0025.1	MA0025.1	0.0074
MA0027.1	MA0027.1	0.724
MA0028.1	MA0028.1	0.118
MA0029.1	MA0029.1	0.472
MA0030.1	MA0030.1	0.11
MA0031.1	MA0031.1	0.253
MA0035.2	MA0035.2	0.907
MA0038.1	MA0038.1	0.247
MA0039.2	MA0039.2	0.127
MA0040.1	MA0040.1	0.202
MA0041.1	MA0041.1	0.614
MA0042.1	MA0042.1	0.421
MA0043.1	MA0043.1	2.59921e-4
MA0046.1	MA0046.1	0.116
MA0047.2	MA0047.2	0.0756
MA0048.1	MA0048.1	0.63
MA0050.1	MA0050.1	2.45535e-12
MA0051.1	MA0051.1	5.5711e-6
MA0052.1	MA0052.1	0.122
MA0055.1	MA0055.1	0.723
MA0057.1	MA0057.1	0.863
MA0058.1	MA0058.1	0.153
MA0059.1	MA0059.1	0.462
MA0060.1	MA0060.1	0.00162
MA0061.1	MA0061.1	0.00128
MA0062.2	MA0062.2	2.60688e-7
MA0065.2	MA0065.2	0.0133
MA0066.1	MA0066.1	0.21
MA0067.1	MA0067.1	2.29636e-4
MA0068.1	MA0068.1	0.777
MA0069.1	MA0069.1	0.621
MA0070.1	MA0070.1	0.018
MA0071.1	MA0071.1	0.0881
MA0072.1	MA0072.1	0.336
MA0073.1	MA0073.1	0.386
MA0074.1	MA0074.1	0.41
MA0076.1	MA0076.1	0.0816
MA0077.1	MA0077.1	0.0693
MA0078.1	MA0078.1	0.897
MA0079.2	MA0079.2	0.814
MA0080.2	MA0080.2	9.58035e-16
MA0081.1	MA0081.1	3.03495e-5
MA0083.1	MA0083.1	0.461
MA0084.1	MA0084.1	0.567
MA0087.1	MA0087.1	0.454
MA0088.1	MA0088.1	0.563
MA0090.1	MA0090.1	0.0181
MA0091.1	MA0091.1	0.627
MA0092.1	MA0092.1	0.454
MA0093.1	MA0093.1	0.356
MA0099.2	MA0099.2	0.00724
MA0100.1	MA0100.1	0.917
MA0101.1	MA0101.1	0.0101
MA0102.2	MA0102.2	1.4117e-4
MA0103.1	MA0103.1	0.21
MA0104.2	MA0104.2	0.367
MA0105.1	MA0105.1	2.02042e-5
MA0106.1	MA0106.1	0.532
MA0107.1	MA0107.1	0.00371
MA0108.2	MA0108.2	7.94471e-6
MA0111.1	MA0111.1	0.433
MA0112.2	MA0112.2	0.00116
MA0113.1	MA0113.1	0.65
MA0114.1	MA0114.1	0.0735
MA0115.1	MA0115.1	0.41
MA0116.1	MA0116.1	4.45939e-5
MA0117.1	MA0117.1	0.242
MA0119.1	MA0119.1	0.39
MA0122.1	MA0122.1	0.326
MA0124.1	MA0124.1	0.089
MA0125.1	MA0125.1	0.376
MA0131.1	MA0131.1	0.537
MA0135.1	MA0135.1	0.3
MA0136.1	MA0136.1	1.20795e-20
MA0137.2	MA0137.2	0.721
MA0138.2	MA0138.2	0.985
MA0139.1	MA0139.1	0.764
MA0140.1	MA0140.1	0.939
MA0141.1	MA0141.1	0.0189
MA0142.1	MA0142.1	0.605
MA0143.1	MA0143.1	0.869
MA0144.1	MA0144.1	0.652
MA0145.1	MA0145.1	0.242
MA0146.1	MA0146.1	0.0179
MA0147.1	MA0147.1	0.492
MA0148.1	MA0148.1	0.387
MA0149.1	MA0149.1	0.116
MA0150.1	MA0150.1	0.00274
MA0152.1	MA0152.1	0.0655
MA0153.1	MA0153.1	0.0246
MA0154.1	MA0154.1	0.00193
MA0155.1	MA0155.1	0.933
MA0156.1	MA0156.1	3.06182e-13
MA0157.1	MA0157.1	0.205
MA0159.1	MA0159.1	0.0784
MA0160.1	MA0160.1	0.00201
MA0162.1	MA0162.1	0.721
MA0163.1	MA0163.1	3.00528e-10
MA0164.1	MA0164.1	0.881
MA0258.1	MA0258.1	0.0132
MA0259.1	MA0259.1	0.815

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13229

Novel motif	Logo	P-value
1	1	0.144
10	10	0.0335
100	100	0.913
101	101	0.41
102	102	0.568
103	103	0.41
104	104	0.564
105	105	0.0813
106	106	0.0117
107	107	0.911
108	108	0.73
109	109	0.028
11	11	0.235
110	110	0.194
111	111	0.0861
112	112	0.287
113	113	0.432
114	114	0.0178
115	115	0.368
116	116	0.764
117	117	0.0172
118	118	0.0997
119	119	0.246
12	12	0.186
120	120	0.6
121	121	0.749
122	122	0.682
123	123	0.00165
124	124	0.261
125	125	0.253
126	126	0.173
127	127	0.509
128	128	0.0997
129	129	0.874
13	13	0.0715
130	130	0.308
131	131	0.622
132	132	0.036
133	133	0.15
134	134	0.663
135	135	0.315
136	136	0.657
137	137	8.08814e-5
138	138	0.341
139	139	0.00878
14	14	0.397
140	140	0.247
141	141	0.805
142	142	0.972
143	143	0.0544
144	144	0.938
145	145	0.443
146	146	0.985
147	147	0.475
148	148	0.0339
149	149	0.615
15	15	0.128
150	150	0.589
151	151	0.222
152	152	0.205
153	153	0.647
154	154	0.975
155	155	0.102
156	156	0.943
157	157	0.732
158	158	0.105
159	159	0.158
16	16	0.596
160	160	0.713
161	161	0.505
162	162	0.353
163	163	0.258
164	164	0.191
165	165	0.106
166	166	0.275
167	167	0.128
168	168	0.533
169	169	0.015
17	17	0.325
18	18	0.228
19	19	0.365
2	2	0.93
20	20	0.343
21	21	0.491
22	22	0.209
23	23	0.316
24	24	0.265
25	25	0.146
26	26	0.0405
27	27	0.671
28	28	0.501
29	29	0.111
3	3	0.0954
30	30	0.335
31	31	0.639
32	32	0.703
33	33	0.192
34	34	0.526
35	35	0.21
36	36	0.0378
37	37	0.0528
38	38	0.501
39	39	0.867
4	4	0.898
40	40	0.0917
41	41	0.0416
42	42	0.259
43	43	0.0743
44	44	0.879
45	45	0.898
46	46	0.18
47	47	0.471
48	48	0.484
49	49	0.0874
5	5	0.0785
50	50	0.968
51	51	0.396
52	52	0.381
53	53	0.252
54	54	0.411
55	55	0.396
56	56	0.832
57	57	0.978
58	58	0.0416
59	59	0.157
6	6	0.812
60	60	0.0487
61	61	0.165
62	62	0.0212
63	63	0.542
64	64	0.436
65	65	0.349
66	66	0.39
67	67	0.493
68	68	0.524
69	69	0.688
7	7	0.157
70	70	0.0374
71	71	0.0398
72	72	0.314
73	73	0.114
74	74	0.411
75	75	0.0296
76	76	0.203
77	77	0.636
78	78	0.249
79	79	0.753
8	8	0.508
80	80	0.255
81	81	0.235
82	82	0.181
83	83	0.675
84	84	0.55
85	85	0.0679
86	86	0.0827
87	87	0.233
88	88	0.617
89	89	0.888
9	9	0.316
90	90	0.0995
91	91	0.463
92	92	0.569
93	93	0.394
94	94	0.0464
95	95	0.00829
96	96	0.3
97	97	0.955
98	98	0.0976
99	99	0.0816

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13229

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011100 human CD14-CD16-positive Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005226
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000875,CL:0002393,CL:0000566,CL:0002397,CL:0000049,CL:0000557,CL:0000837,CL:0002396,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008049;DRR008921;DRZ000346;DRZ001731;DRZ011696;DRZ013081
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011100
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.72!517.87!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.49!307.81!PLEK;;chr7:50344289..50344323,+!p1@IKZF1!2.10!125.69!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!2.02!103.17!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.00!98.04!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.90!79.23!IRF8;;chr19:13213662..13213686,-!p1@LYL1!1.82!93.77!LYL1;;chr12:54778351..54778378,-!p6@ZNF385A!1.81!63.56!ZNF385A;;chr5:176735063..176735088,-!p2@MXD3!1.73!52.44!MXD3;;chr11:47399996..47400014,-!p4@SPI1!1.68!46.74!SPI1;;chrX:106960180..106960197,-!p2@TSC22D3!1.66!162.74!TSC22D3;;chr1:212873084..212873137,-!p2@BATF3!1.65!43.61!BATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.64!543.80!ZEB2;;chr12:54778471..54778528,-!p1@ZNF385A!1.63!41.33!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.62!40.76!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.58!67.26!RUNX3;;chr11:47399920..47399931,-!p7@SPI1!1.58!36.77!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.57!35.91!OLIG1;;chr19:16435625..16435682,+!p1@KLF2!1.55!1044.29!KLF2;;chr20:39317868..39317884,-!p1@MAFB!1.52!364.25!MAFB;;chr14:75745523..75745537,+!p1@FOS!1.51!3518.77!FOS;;chr19:33793430..33793447,-!p1@CEBPA!1.51!126.55!CEBPA;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.64!SPI1;;chr9:110252035..110252057,-!p1@KLF4!1.47!435.78!KLF4;;chr7:128577972..128578047,+!p1@IRF5!1.46!43.61!IRF5;;chrX:106960249..106960260,-!p5@TSC22D3!1.45!42.47!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!1.43!69.54!TSC22D3;;chr19:42636586..42636607,-!p1@POU2F2!1.40!65.55!POU2F2;;chrX:106960285..106960299,-!p1@TSC22D3!1.37!576.87!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.37!22.23!IKZF1;;chr1:212873061..212873080,-!p4@BATF3!1.32!19.95!BATF3;;chr21:34442540..34442560,+!p2@OLIG1!1.30!19.10!OLIG1;;chr2:231090433..231090469,+!p1@SP140!1.30!18.81!SP140;;chr5:88178983..88179012,-!p1@MEF2C!1.29!138.52!MEF2C;;chr9:110250697..110250738,-!p2@KLF4!1.29!21.95!KLF4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.27!896.37!NFKBIZ;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.39!ZEB2;;chr10:114710098..114710130,+!p2@TCF7L2!1.22!116.00!TCF7L2;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.14!HHEX;;chr1:25256439..25256476,-!p3@RUNX3!1.21!15.11!RUNX3;;chr1:935398..935465,-!p2@HES4!1.19!29.64!HES4;;chr12:72056800..72056834,+!p1@THAP2!1.19!19.67!THAP2;;chr2:208031943..208031978,-!p5@KLF7!1.19!19.38!KLF7;;chr10:114709999..114710031,+!p1@TCF7L2!1.18!331.75!TCF7L2;;chr10:35416142..35416169,+!p3@CREM!1.18!37.34!CREM;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.51!CEBPB;;chrY:21906594..21906622,-!p1@KDM5D!1.17!13.68!KDM5D;;chr9:110251836..110251887,-!p4@KLF4!1.15!17.39!KLF4;;chr10:3827371..3827386,-!p2@KLF6!1.14!108.30!KLF6;;chr2:70142232..70142251,+!p1@MXD1!1.14!72.11!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.13!231.15!FOSB;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.04!NR4A1;;chr2:208394817..208394834,+!p3@CREB1!1.13!50.45!CREB1;;chr2:28618532..28618610,+!p4@FOSL2!1.13!21.38!FOSL2;;chr10:51572408..51572454,+!p3@NCOA4!1.11!69.83!NCOA4;;chr19:12902289..12902307,+!p1@JUNB!1.07!2475.05!JUNB;;chr4:38665810..38665827,+!p1@KLF3!1.07!155.90!KLF3;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.72!NR4A2;;chr8:71316428..71316459,-!p2@NCOA2!1.06!17.67!NCOA2;;chr5:131826457..131826514,-!p1@IRF1!1.05!405.29!IRF1;;chr11:128563948..128564003,+!p1@FLI1!1.05!123.41!FLI1;;chr2:68592394..68592405,+!p2@PLEK!1.04!9.98!PLEK;;chr2:61108695..61108753,+!p1@REL!1.03!67.26!REL;;chr1:935467..935484,-!p1@HES4!1.02!42.75!HES4;;chr7:50344251..50344288,+!p3@IKZF1!1.02!9.41!IKZF1;;chr19:10416315..10416333,-!p1@ZGLP1!1.01!9.12!ZGLP1;;chr8:48650697..48650708,-!p2@CEBPD!1.00!68.97!CEBPD;;chr2:157198916..157198978,-!p2@NR4A2!1.00!32.49!NR4A2;;chr8:37553292..37553317,+!p1@ZNF703!0.99!212.62!ZNF703;;chr13:41593425..41593480,-!p1@ELF1!0.98!55.58!ELF1;;chr3:39195075..39195088,-!p1@CSRNP1!0.98!54.72!CSRNP1;;chr10:94449675..94449694,+!p2@HHEX!0.98!23.66!HHEX;;chr9:117150254..117150271,-!p1@AKNA!0.98!23.66!AKNA;;chr12:72056773..72056796,+!p3@THAP2!0.98!11.12!THAP2;;chr6:170862932..170862947,+!p5@TBP!0.98!8.55!TBP;;chr2:238600998..238601013,+!p5@LRRFIP1!0.97!8.27!LRRFIP1;;chr14:64971288..64971316,-!p2@ZBTB25!0.96!25.94!ZBTB25;;chr12:54694758..54694805,-!p1@NFE2!0.96!9.98!NFE2;;chr6:144385698..144385742,-!p2@PLAGL1!0.96!9.98!PLAGL1;;chrX:129244454..129244488,-!p1@ELF4!0.95!59.00!ELF4;;chr7:77428066..77428132,+!p2@PHTF2!0.95!53.30!PHTF2;;chr10:43932296..43932360,+!p1@ZNF487P!0.95!16.82!ZNF487P;;chr10:114710060..114710069,+!p5@TCF7L2!0.95!13.68!TCF7L2;;chr7:99680193..99680204,-!p2@ZNF3!0.95!7.98!ZNF3;;chr9:135854091..135854159,+!p1@GFI1B!0.95!7.98!GFI1B;;chr2:231090471..231090504,+!p2@SP140!0.95!7.98!SP140;;chr2:208031542..208031595,-!p2@KLF7!0.94!56.15!KLF7;;chr7:115670804..115670825,-!p1@TFEC!0.94!7.70!TFEC;;chr13:41593405..41593416,-!p9@ELF1!0.94!7.70!ELF1;;chr19:45579725..45579743,-!p1@ZNF296!0.93!35.34!ZNF296;;chr2:145282041..145282092,-!p8@ZEB2!0.93!11.69!ZEB2;;chr9:137217986..137218049,+!p3@RXRA!0.92!21.66!RXRA;;chr19:13213954..13214021,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002396;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor1.CNhs13229.11790-124B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor1.CNhs13229.11790-124B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor1.CNhs13229.11790-124B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor1.CNhs13229.11790-124B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor1.CNhs13229.11790-124B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11790-124B8
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011100
+|is_a=EFO:0002091;;FF:0011100
+|is_obsolete=
+|library_id=CNhs13229
+|library_id_phase_based=2:CNhs13229
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11790
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11790
 |name=CD14-CD16+ Monocytes, donor1
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13229,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=0.4286
 |sample_age=25
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 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=blood
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11790-124B8;search_select_hide=table117:FF:11790-124B8
 }}

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FF:11790-124B8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0