FF:11801-124D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005678 | |||
|accession_numbers=CAGE;DRX008163;DRR009035;DRZ000460;DRZ001845;DRZ011810;DRZ013195 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.72!527.05!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.60!395.23!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.12!131.18!IRF8;;chr7:50344289..50344323,+!p1@IKZF1!2.09!121.61!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!2.04!109.49!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.93!84.19!ZNF385A;;chr12:54778471..54778528,-!p1@ZNF385A!1.92!82.28!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.54!SPI1;;chr2:145271342..145271377,-!p5@ZEB2!1.73!52.73!ZEB2;;chr2:145277640..145277771,-!p1@ZEB2!1.72!646.53!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.71!50.60!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.67!508.12!MAFB;;chr14:75745523..75745537,+!p1@FOS!1.62!4599.91!FOS;;chr11:47400032..47400043,-!p5@SPI1!1.59!38.06!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.58!54.43!LYL1;;chr11:47399920..47399931,-!p7@SPI1!1.58!37.21!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.56!35.50!TFEC;;chr5:176735063..176735088,-!p2@MXD3!1.53!32.95!MXD3;;chr1:25256756..25256774,-!p1@RUNX3!1.52!58.89!RUNX3;;chr7:128577972..128578047,+!p1@IRF5!1.52!49.54!IRF5;;chr12:52445218..52445237,+!p1@NR4A1!1.49!359.30!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!1.46!114.59!CEBPA;;chrX:106960180..106960197,-!p2@TSC22D3!1.45!99.92!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.45!36.57!THAP2;;chr5:88178983..88179012,-!p1@MEF2C!1.44!197.93!MEF2C;;chr14:35872962..35873025,-!p3@NFKBIA!1.44!66.33!NFKBIA;;chr11:47400045..47400060,-!p6@SPI1!1.44!26.36!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.44!26.36!OLIG1;;chr19:45971246..45971265,+!p1@FOSB!1.41!437.33!FOSB;;chr9:110252035..110252057,-!p1@KLF4!1.38!358.03!KLF4;;chr2:70142232..70142251,+!p1@MXD1!1.35!116.51!MXD1;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.26!IKZF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.33!28.28!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.33!20.20!PLEK;;chr19:12902289..12902307,+!p1@JUNB!1.32!4383.90!JUNB;;chr6:144385698..144385742,-!p2@PLAGL1!1.32!24.24!PLAGL1;;chr10:51572408..51572454,+!p3@NCOA4!1.31!110.13!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.31!23.60!NFE2;;chr19:16435625..16435682,+!p1@KLF2!1.30!585.30!KLF2;;chr19:42636586..42636607,-!p1@POU2F2!1.29!50.39!POU2F2;;chr14:35872453..35872485,-!p2@NFKBIA!1.29!45.28!NFKBIA;;chr14:75746722..75746777,+!p2@FOS!1.29!23.39!FOS;;chr3:101568349..101568365,+!p1@NFKBIZ!1.28!904.63!NFKBIZ;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.65!KDM5D;;chr1:25256439..25256476,-!p3@RUNX3!1.25!16.80!RUNX3;;chr21:34442540..34442560,+!p2@OLIG1!1.25!16.80!OLIG1;;chr11:128563948..128564003,+!p1@FLI1!1.24!191.77!FLI1;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!962.25!NFKBIA;;chr2:157189180..157189290,-!p1@NR4A2!1.22!79.30!NR4A2;;chr2:28618532..28618610,+!p4@FOSL2!1.22!26.36!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!1.20!28.28!CEBPB;;chr6:44233252..44233296,-!p1@NFKBIE!1.19!141.59!NFKBIE;;chr9:110250697..110250738,-!p2@KLF4!1.19!17.01!KLF4;;chr10:104154246..104154347,+!p3@NFKB2!1.18!86.10!NFKB2;;chrX:106960221..106960236,-!p3@TSC22D3!1.18!38.91!TSC22D3;;chr1:212873084..212873137,-!p2@BATF3!1.18!14.24!BATF3;;chr2:208394817..208394834,+!p3@CREB1!1.16!54.21!CREB1;;chr4:185395590..185395627,-!p3@IRF2!1.16!16.80!IRF2;;chr4:103423079..103423112,+!p4@NFKB1!1.16!13.61!NFKB1;;chr16:31885093..31885165,+!p1@ZNF267!1.14!194.75!ZNF267;;chr10:3827371..3827386,-!p2@KLF6!1.14!107.15!KLF6;;chr17:38497662..38497713,+!p4@RARA!1.12!14.24!RARA;;chr2:231090433..231090469,+!p1@SP140!1.12!12.33!SP140;;chr2:61108695..61108753,+!p1@REL!1.11!81.43!REL;;chr21:30671690..30671762,+!p2@BACH1!1.11!40.39!BACH1;;chr6:106534192..106534224,+!p1@PRDM1!1.10!32.74!PRDM1;;chr10:35416142..35416169,+!p3@CREM!1.09!29.98!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.51!NR4A3;;chr4:185395633..185395651,-!p2@IRF2!1.09!18.28!IRF2;;chr10:114709999..114710031,+!p1@TCF7L2!1.08!258.74!TCF7L2;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.52!HHEX;;chr14:64971288..64971316,-!p2@ZBTB25!1.08!34.44!ZBTB25;;chr12:72056773..72056796,+!p3@THAP2!1.08!14.46!THAP2;;chr7:50344251..50344288,+!p3@IKZF1!1.08!11.06!IKZF1;;chr10:104154415..104154434,+!p5@NFKB2!1.06!10.42!NFKB2;;chr10:114710098..114710130,+!p2@TCF7L2!1.05!78.24!TCF7L2;;chr13:41593425..41593480,-!p1@ELF1!1.05!65.06!ELF1;;chr5:131826457..131826514,-!p1@IRF1!1.04!395.87!IRF1;;chr10:104155480..104155534,+!p2@NFKB2!1.03!63.57!NFKB2;;chr10:135044190..135044229,+!p3@UTF1!1.03!9.78!UTF1;;chrY:2803415..2803468,+!p1@ZFY!1.03!9.78!ZFY;;chr4:106068026..106068084,+!p1@TET2!1.02!87.38!TET2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.02!51.88!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!1.02!42.95!ZNF296;;chr20:48807430..48807439,+!p8@CEBPB!1.02!14.24!CEBPB;;chr2:208031943..208031978,-!p5@KLF7!1.01!12.33!KLF7;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!244.92!TSC22D3;;chr3:39195075..39195088,-!p1@CSRNP1!1.00!57.62!CSRNP1;;chr9:137217986..137218049,+!p3@RXRA!1.00!26.58!RXRA;;chr2:145277589..145277612,-!p12@ZEB2!0.99!8.72!ZEB2;;chr2:145277882..145277967,-!p3@ZEB2!0.98!15.09!ZEB2;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.47!PRDM1;;chr19:36391434..36391450,-!p1@NFKBID!0.97!16.58!NFKBID;;chr19:45251395..45251432,+!p8@BCL3!0.97!8.29!BCL3;;chrX:106960249..106960260,-!p5@TSC22D3!0.96!12.97!TSC22D3;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.69!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.96!11.48!IRF2;;chr19:45252008..45252024,+!p2@BCL3!0.95!27.00!BCL3;;chr9:110252074..110252079,-!p3@KLF4!0.95!13.39!KLF4;;chr9:102584241..102584261,+!p4@NR4A3!0.95!12.54!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!0.94!57.40!ELF4;;chr5:88179017..88179046,-!p2@MEF2C!0.94!31.89!MEF2C;;chr10:64576105..64576133,-!p1@EGR2!0.94!16.16!EGR2;;chr8:71316428..71316459,-!p2@NCOA2!0.94!13.18!NCOA2;;chr10:114710060..114710069,+!p5@TCF7L2!0.93!13.18!TCF7L2;;chr14:35872494..35872511,-!p5@NFKBIA!0.93!10.21!NFKBIA;;chr19:50432132..50432217,+!p2@ATF5!0.92!8.72!ATF5;;chr4:106066730..106066754,+!p6@TET2!0.92!7.23!TET2;;chr6:12011943..12012015,+!p2@HIVEP1!0.91!24.02!HIVEP1;;chr1:935398..935465,-!p2@HES4!0.91!15.09!HES4;;chr2:231084659..231084721,-!p1@SP110!0.90!171.36!SP110;;chr2:157198916..157198978,-!p2@NR4A2!0.90!25.30!NR4A2;;chr17:38498594..38498661,+!p2@RARA!0.90!24.45!RARA;;chr9:117150254..117150271,-!p1@AKNA!0.90!19.77!AKNA;;chr2:61108808..61108821,+!p3@REL!0.90!8.93!REL;;chr12:72056749..72056767,+!p6@THAP2!0.90!7.87!THAP2;;chr1:212873061..212873080,-!p4@BATF3!0.90!7.02!BATF3;;chr1:935467..935484,-!p1@HES4!0.89!31.04!HES4;;chr10:114710244..114710257,+!p3@TCF7L2!0.89!18.92!TCF7L2;;chr9:110251836..110251887,-!p4@KLF4!0.89!9.14!KLF4;;chr12:54694807..54694832,-!p3@NFE2!0.89!6.80!NFE2;;chr8:37553292..37553317,+!p1@ZNF703!0.88!166.04!ZNF703;;chr4:38665769..38665801,+!p2@KLF3!0.88!62.93!KLF3;;chr17:38498402..38498445,+!p3@RARA!0.88!25.09!RARA;;chr20:48807615..48807644,+!p6@CEBPB!0.88!11.27!CEBPB;;chr20:48807648..48807671,+!p9@CEBPB!0.88!9.78!CEBPB;;chr8:81397876..81397898,+!p5@ZBTB10!0.88!7.87!ZBTB10;;chr2:145274981..145274994,-!p9@ZEB2!0.87!9.57!ZEB2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.87!6.38!LRRFIP1;;chr11:615942..615957,-!p1@IRF7!0.86!63.36!IRF7;;chr2:10183651..10183713,+!p1@KLF11!0.86!48.69!KLF11;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.65!HHEX;;chr4:83822199..83822239,+!p2@THAP9!0.86!7.65!THAP9;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.17!LYL1;;chr13:41593392..41593403,-!p7@ELF1!0.86!6.17!ELF1;;chr20:48807351..48807384,+!p1@CEBPB!0.85!664.81!CEBPB;;chr8:81397846..81397860,+!p3@ZBTB10!0.85!7.65!ZBTB10;;chr4:38665810..38665827,+!p1@KLF3!0.84!91.21!KLF3;;chr6:391743..391759,+!p1@IRF4!0.84!5.95!IRF4;;chr11:2292226..2292270,-!p1@ASCL2!0.84!5.95!ASCL2;;chr20:56195474..56195506,-!p1@ZBP1!0.84!5.95!ZBP1;;chr1:151030536..151030549,+!p8@MLLT11!0.83!5.74!MLLT11;;chr1:161014760..161014788,-!p4@USF1!0.83!5.74!USF1;;chr21:30672433..30672464,+!p6@BACH1!0.83!5.74!BACH1;;chr2:231090471..231090504,+!p2@SP140!0.83!5.74!SP140;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.16!STAT5A;;chr19:45250948..45250998,+!p3@BCL3!0.82!14.88!BCL3;;chr14:75988771..75988826,+!p1@BATF!0.82!7.65!BATF;;chr8:48650715..48650735,-!p1@CEBPD!0.81!758.15!CEBPD;;chr14:45722360..45722415,-!p1@MIS18BP1!0.81!91.42!MIS18BP1;;chr21:30671235..30671253,+!p1@BACH1!0.81!74.84!BACH1;;chr5:172483347..172483407,+!p1@C5orf41!0.81!44.43!CREBRF;;chr2:208031542..208031595,-!p2@KLF7!0.81!41.67!KLF7;;chr7:77428066..77428132,+!p2@PHTF2!0.81!37.84!PHTF2;;chr1:156470515..156470542,-!p2@MEF2D!0.81!30.83!MEF2D;;chr14:35872926..35872951,-!p4@NFKBIA!0.81!7.87!NFKBIA;;chr1:151030388..151030419,+!p9@MLLT11!0.81!5.53!MLLT11;;chr2:97202480..97202499,+!p1@ARID5A!0.80!58.47!ARID5A;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.76!NR1H3;;chr8:48650697..48650708,-!p2@CEBPD!0.79!42.73!CEBPD;;chr3:39195037..39195069,-!p2@CSRNP1!0.79!34.65!CSRNP1;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.51!ZNF467;;chrX:129244840..129244881,-!p2@ELF4!0.79!21.26!ELF4;;chr21:36421535..36421610,-!p2@RUNX1!0.79!19.77!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!0.79!9.57!ZNF804A;;chr5:142782862..142782881,-!p11@NR3C1!0.79!5.10!NR3C1;;chr2:8822176..8822196,+!p1@ID2!0.78!783.23!ID2;;chr1:40367530..40367597,-!p1@MYCL1!0.78!9.57!MYCL1;;chr19:45972701..45972774,+!p2@FOSB!0.78!7.02!FOSB;;chr10:104155659..104155676,+!p4@NFKB2!0.78!6.38!NFKB2;;chr10:31288398..31288455,-!p2@ZNF438!0.78!5.95!ZNF438;;chr20:48807875..48807982,+!p2@CEBPB!0.77!117.14!CEBPB;;chr4:103422499..103422632,+!p1@NFKB1!0.77!113.74!NFKB1;;chr22:21771656..21771662,+!p1@HIC2!0.77!4.89!HIC2;;chr13:41593405..41593416,-!p9@ELF1!0.77!4.89!ELF1;;chrX:129244430..129244442,-!p5@ELF4!0.77!4.89!ELF4;;chr19:47616992..47617011,-!p4@ZC3H4!0.76!10.84!ZC3H4;;chr10:43932296..43932360,+!p1@ZNF487P!0.76!10.63!ZNF487P;;chr5:88179195..88179224,-!p3@MEF2C!0.76!7.87!MEF2C;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.32!CDC5L;;chr9:88969303..88969335,-!p1@ZCCHC6!0.75!47.62!ZCCHC6;;chr3:187463179..187463201,-!p2@BCL6!0.75!20.84!BCL6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.31!BCL11A;;chr6:15246799..15246810,+!p18@JARID2!0.75!4.68!JARID2;;chr1:212782094..212782109,+!p1@ATF3!0.74!137.77!ATF3;;chr6:12012170..12012245,+!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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.72!527.05!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.60!395.23!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.12!131.18!IRF8;;chr7:50344289..50344323,+!p1@IKZF1!2.09!121.61!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!2.04!109.49!SPI1;;chr12:54778351..54778378,-!p6@ZNF385A!1.93!84.19!ZNF385A;;chr12:54778471..54778528,-!p1@ZNF385A!1.92!82.28!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.54!SPI1;;chr2:145271342..145271377,-!p5@ZEB2!1.73!52.73!ZEB2;;chr2:145277640..145277771,-!p1@ZEB2!1.72!646.53!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.71!50.60!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.67!508.12!MAFB;;chr14:75745523..75745537,+!p1@FOS!1.62!4599.91!FOS;;chr11:47400032..47400043,-!p5@SPI1!1.59!38.06!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.58!54.43!LYL1;;chr11:47399920..47399931,-!p7@SPI1!1.58!37.21!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.56!35.50!TFEC;;chr5:176735063..176735088,-!p2@MXD3!1.53!32.95!MXD3;;chr1:25256756..25256774,-!p1@RUNX3!1.52!58.89!RUNX3;;chr7:128577972..128578047,+!p1@IRF5!1.52!49.54!IRF5;;chr12:52445218..52445237,+!p1@NR4A1!1.49!359.30!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!1.46!114.59!CEBPA;;chrX:106960180..106960197,-!p2@TSC22D3!1.45!99.92!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.45!36.57!THAP2;;chr5:88178983..88179012,-!p1@MEF2C!1.44!197.93!MEF2C;;chr14:35872962..35873025,-!p3@NFKBIA!1.44!66.33!NFKBIA;;chr11:47400045..47400060,-!p6@SPI1!1.44!26.36!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.44!26.36!OLIG1;;chr19:45971246..45971265,+!p1@FOSB!1.41!437.33!FOSB;;chr9:110252035..110252057,-!p1@KLF4!1.38!358.03!KLF4;;chr2:70142232..70142251,+!p1@MXD1!1.35!116.51!MXD1;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.26!IKZF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.33!28.28!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.33!20.20!PLEK;;chr19:12902289..12902307,+!p1@JUNB!1.32!4383.90!JUNB;;chr6:144385698..144385742,-!p2@PLAGL1!1.32!24.24!PLAGL1;;chr10:51572408..51572454,+!p3@NCOA4!1.31!110.13!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.31!23.60!NFE2;;chr19:16435625..16435682,+!p1@KLF2!1.30!585.30!KLF2;;chr19:42636586..42636607,-!p1@POU2F2!1.29!50.39!POU2F2;;chr14:35872453..35872485,-!p2@NFKBIA!1.29!45.28!NFKBIA;;chr14:75746722..75746777,+!p2@FOS!1.29!23.39!FOS;;chr3:101568349..101568365,+!p1@NFKBIZ!1.28!904.63!NFKBIZ;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.65!KDM5D;;chr1:25256439..25256476,-!p3@RUNX3!1.25!16.80!RUNX3;;chr21:34442540..34442560,+!p2@OLIG1!1.25!16.80!OLIG1;;chr11:128563948..128564003,+!p1@FLI1!1.24!191.77!FLI1;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!962.25!NFKBIA;;chr2:157189180..157189290,-!p1@NR4A2!1.22!79.30!NR4A2;;chr2:28618532..28618610,+!p4@FOSL2!1.22!26.36!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!1.20!28.28!CEBPB;;chr6:44233252..44233296,-!p1@NFKBIE!1.19!141.59!NFKBIE;;chr9:110250697..110250738,-!p2@KLF4!1.19!17.01!KLF4;;chr10:104154246..104154347,+!p3@NFKB2!1.18!86.10!NFKB2;;chrX:106960221..106960236,-!p3@TSC22D3!1.18!38.91!TSC22D3;;chr1:212873084..212873137,-!p2@BATF3!1.18!14.24!BATF3;;chr2:208394817..208394834,+!p3@CREB1!1.16!54.21!CREB1;;chr4:185395590..185395627,-!p3@IRF2!1.16!16.80!IRF2;;chr4:103423079..103423112,+!p4@NFKB1!1.16!13.61!NFKB1;;chr16:31885093..31885165,+!p1@ZNF267!1.14!194.75!ZNF267;;chr10:3827371..3827386,-!p2@KLF6!1.14!107.15!KLF6;;chr17:38497662..38497713,+!p4@RARA!1.12!14.24!RARA;;chr2:231090433..231090469,+!p1@SP140!1.12!12.33!SP140;;chr2:61108695..61108753,+!p1@REL!1.11!81.43!REL;;chr21:30671690..30671762,+!p2@BACH1!1.11!40.39!BACH1;;chr6:106534192..106534224,+!p1@PRDM1!1.10!32.74!PRDM1;;chr10:35416142..35416169,+!p3@CREM!1.09!29.98!CREM;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.51!NR4A3;;chr4:185395633..185395651,-!p2@IRF2!1.09!18.28!IRF2;;chr10:114709999..114710031,+!p1@TCF7L2!1.08!258.74!TCF7L2;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.52!HHEX;;chr14:64971288..64971316,-!p2@ZBTB25!1.08!34.44!ZBTB25;;chr12:72056773..72056796,+!p3@THAP2!1.08!14.46!THAP2;;chr7:50344251..50344288,+!p3@IKZF1!1.08!11.06!IKZF1;;chr10:104154415..104154434,+!p5@NFKB2!1.06!10.42!NFKB2;;chr10:114710098..114710130,+!p2@TCF7L2!1.05!78.24!TCF7L2;;chr13:41593425..41593480,-!p1@ELF1!1.05!65.06!ELF1;;chr5:131826457..131826514,-!p1@IRF1!1.04!395.87!IRF1;;chr10:104155480..104155534,+!p2@NFKB2!1.03!63.57!NFKB2;;chr10:135044190..135044229,+!p3@UTF1!1.03!9.78!UTF1;;chrY:2803415..2803468,+!p1@ZFY!1.03!9.78!ZFY;;chr4:106068026..106068084,+!p1@TET2!1.02!87.38!TET2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.02!51.88!LRRFIP1;;chr19:45579725..45579743,-!p1@ZNF296!1.02!42.95!ZNF296;;chr20:48807430..48807439,+!p8@CEBPB!1.02!14.24!CEBPB;;chr2:208031943..208031978,-!p5@KLF7!1.01!12.33!KLF7;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!244.92!TSC22D3;;chr3:39195075..39195088,-!p1@CSRNP1!1.00!57.62!CSRNP1;;chr9:137217986..137218049,+!p3@RXRA!1.00!26.58!RXRA;;chr2:145277589..145277612,-!p12@ZEB2!0.99!8.72!ZEB2;;chr2:145277882..145277967,-!p3@ZEB2!0.98!15.09!ZEB2;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.47!PRDM1;;chr19:36391434..36391450,-!p1@NFKBID!0.97!16.58!NFKBID;;chr19:45251395..45251432,+!p8@BCL3!0.97!8.29!BCL3;;chrX:106960249..106960260,-!p5@TSC22D3!0.96!12.97!TSC22D3;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.69!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.96!11.48!IRF2;;chr19:45252008..45252024,+!p2@BCL3!0.95!27.00!BCL3;;chr9:110252074..110252079,-!p3@KLF4!0.95!13.39!KLF4;;chr9:102584241..102584261,+!p4@NR4A3!0.95!12.54!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!0.94!57.40!ELF4;;chr5:88179017..88179046,-!p2@MEF2C!0.94!31.89!MEF2C;;chr10:64576105..64576133,-!p1@EGR2!0.94!16.16!EGR2;;chr8:71316428..71316459,-!p2@NCOA2!0.94!13.18!NCOA2;;chr10:114710060..114710069,+!p5@TCF7L2!0.93!13.18!TCF7L2;;chr14:35872494..35872511,-!p5@NFKBIA!0.93!10.21!NFKBIA;;chr19:50432132..50432217,+!p2@ATF5!0.92!8.72!ATF5;;chr4:106066730..106066754,+!p6@TET2!0.92!7.23!TET2;;chr6:12011943..12012015,+!p2@HIVEP1!0.91!24.02!HIVEP1;;chr1:935398..935465,-!p2@HES4!0.91!15.09!HES4;;chr2:231084659..231084721,-!p1@SP110!0.90!171.36!SP110;;chr2:157198916..157198978,-!p2@NR4A2!0.90!25.30!NR4A2;;chr17:38498594..38498661,+!p2@RARA!0.90!24.45!RARA;;chr9:117150254..117150271,-!p1@AKNA!0.90!19.77!AKNA;;chr2:61108808..61108821,+!p3@REL!0.90!8.93!REL;;chr12:72056749..72056767,+!p6@THAP2!0.90!7.87!THAP2;;chr1:212873061..212873080,-!p4@BATF3!0.90!7.02!BATF3;;chr1:935467..935484,-!p1@HES4!0.89!31.04!HES4;;chr10:114710244..114710257,+!p3@TCF7L2!0.89!18.92!TCF7L2;;chr9:110251836..110251887,-!p4@KLF4!0.89!9.14!KLF4;;chr12:54694807..54694832,-!p3@NFE2!0.89!6.80!NFE2;;chr8:37553292..37553317,+!p1@ZNF703!0.88!166.04!ZNF703;;chr4:38665769..38665801,+!p2@KLF3!0.88!62.93!KLF3;;chr17:38498402..38498445,+!p3@RARA!0.88!25.09!RARA;;chr20:48807615..48807644,+!p6@CEBPB!0.88!11.27!CEBPB;;chr20:48807648..48807671,+!p9@CEBPB!0.88!9.78!CEBPB;;chr8:81397876..81397898,+!p5@ZBTB10!0.88!7.87!ZBTB10;;chr2:145274981..145274994,-!p9@ZEB2!0.87!9.57!ZEB2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.87!6.38!LRRFIP1;;chr11:615942..615957,-!p1@IRF7!0.86!63.36!IRF7;;chr2:10183651..10183713,+!p1@KLF11!0.86!48.69!KLF11;;chr10:94449675..94449694,+!p2@HHEX!0.86!17.65!HHEX;;chr4:83822199..83822239,+!p2@THAP9!0.86!7.65!THAP9;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.17!LYL1;;chr13:41593392..41593403,-!p7@ELF1!0.86!6.17!ELF1;;chr20:48807351..48807384,+!p1@CEBPB!0.85!664.81!CEBPB;;chr8:81397846..81397860,+!p3@ZBTB10!0.85!7.65!ZBTB10;;chr4:38665810..38665827,+!p1@KLF3!0.84!91.21!KLF3;;chr6:391743..391759,+!p1@IRF4!0.84!5.95!IRF4;;chr11:2292226..2292270,-!p1@ASCL2!0.84!5.95!ASCL2;;chr20:56195474..56195506,-!p1@ZBP1!0.84!5.95!ZBP1;;chr1:151030536..151030549,+!p8@MLLT11!0.83!5.74!MLLT11;;chr1:161014760..161014788,-!p4@USF1!0.83!5.74!USF1;;chr21:30672433..30672464,+!p6@BACH1!0.83!5.74!BACH1;;chr2:231090471..231090504,+!p2@SP140!0.83!5.74!SP140;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.16!STAT5A;;chr19:45250948..45250998,+!p3@BCL3!0.82!14.88!BCL3;;chr14:75988771..75988826,+!p1@BATF!0.82!7.65!BATF;;chr8:48650715..48650735,-!p1@CEBPD!0.81!758.15!CEBPD;;chr14:45722360..45722415,-!p1@MIS18BP1!0.81!91.42!MIS18BP1;;chr21:30671235..30671253,+!p1@BACH1!0.81!74.84!BACH1;;chr5:172483347..172483407,+!p1@C5orf41!0.81!44.43!CREBRF;;chr2:208031542..208031595,-!p2@KLF7!0.81!41.67!KLF7;;chr7:77428066..77428132,+!p2@PHTF2!0.81!37.84!PHTF2;;chr1:156470515..156470542,-!p2@MEF2D!0.81!30.83!MEF2D;;chr14:35872926..35872951,-!p4@NFKBIA!0.81!7.87!NFKBIA;;chr1:151030388..151030419,+!p9@MLLT11!0.81!5.53!MLLT11;;chr2:97202480..97202499,+!p1@ARID5A!0.80!58.47!ARID5A;;chr11:47279504..47279563,+!p1@NR1H3!0.80!12.76!NR1H3;;chr8:48650697..48650708,-!p2@CEBPD!0.79!42.73!CEBPD;;chr3:39195037..39195069,-!p2@CSRNP1!0.79!34.65!CSRNP1;;chr7:149470641..149470694,-!p1@ZNF467!0.79!25.51!ZNF467;;chrX:129244840..129244881,-!p2@ELF4!0.79!21.26!ELF4;;chr21:36421535..36421610,-!p2@RUNX1!0.79!19.77!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!0.79!9.57!ZNF804A;;chr5:142782862..142782881,-!p11@NR3C1!0.79!5.10!NR3C1;;chr2:8822176..8822196,+!p1@ID2!0.78!783.23!ID2;;chr1:40367530..40367597,-!p1@MYCL1!0.78!9.57!MYCL1;;chr19:45972701..45972774,+!p2@FOSB!0.78!7.02!FOSB;;chr10:104155659..104155676,+!p4@NFKB2!0.78!6.38!NFKB2;;chr10:31288398..31288455,-!p2@ZNF438!0.78!5.95!ZNF438;;chr20:48807875..48807982,+!p2@CEBPB!0.77!117.14!CEBPB;;chr4:103422499..103422632,+!p1@NFKB1!0.77!113.74!NFKB1;;chr22:21771656..21771662,+!p1@HIC2!0.77!4.89!HIC2;;chr13:41593405..41593416,-!p9@ELF1!0.77!4.89!ELF1;;chrX:129244430..129244442,-!p5@ELF4!0.77!4.89!ELF4;;chr19:47616992..47617011,-!p4@ZC3H4!0.76!10.84!ZC3H4;;chr10:43932296..43932360,+!p1@ZNF487P!0.76!10.63!ZNF487P;;chr5:88179195..88179224,-!p3@MEF2C!0.76!7.87!MEF2C;;chr6:44355499..44355514,+!p3@CDC5L!0.76!5.32!CDC5L;;chr9:88969303..88969335,-!p1@ZCCHC6!0.75!47.62!ZCCHC6;;chr3:187463179..187463201,-!p2@BCL6!0.75!20.84!BCL6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.31!BCL11A;;chr6:15246799..15246810,+!p18@JARID2!0.75!4.68!JARID2;;chr1:212782094..212782109,+!p1@ATF3!0.74!137.77!ATF3;;chr6:12012170..12012245,+!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor2.CNhs13208.11801-124D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor2.CNhs13208.11801-124D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor2.CNhs13208.11801-124D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor2.CNhs13208.11801-124D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor2.CNhs13208.11801-124D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11801-124D1 | |id=FF:11801-124D1 | ||
|is_a=EFO:0002091;;FF:0011112 | |is_a=EFO:0002091;;FF:0011112 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13208 | |||
|library_id_phase_based=2:CNhs13208 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11801 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11801 | |||
|name=CD14+CD16+ Monocytes, donor2 | |name=CD14+CD16+ Monocytes, donor2 | ||
|namespace= | |namespace= | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13208,LSID1004,release012,COMPLETED | |profile_hcage=CNhs13208,LSID1004,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 79: | ||
|rna_weight_ug=1.3822 | |rna_weight_ug=1.3822 | ||
|sample_age=23 | |sample_age=23 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 84: | Line 101: | ||
|top_motifs=NFIL3:2.92818930641;SPIB:2.80457321506;SPI1:2.6659940963;IRF1,2:2.41615908422;NANOG{mouse}:2.26036746124;NFKB1_REL_RELA:2.17678732176;PAX2:2.1421770002;ETS1,2:2.03308674528;HMX1:1.97468732;ATF5_CREB3:1.92964020927;IRF7:1.81906063861;EP300:1.75273360733;DMAP1_NCOR{1,2}_SMARC:1.7479614368;TGIF1:1.71953815186;RUNX1..3:1.70621650153;ELF1,2,4:1.67615512262;MAFB:1.57120088577;SREBF1,2:1.52710294801;CEBPA,B_DDIT3:1.51108136544;FOXN1:1.4993130571;RFX2..5_RFXANK_RFXAP:1.46811361159;CREB1:1.38329128722;FOXP3:1.19858810346;FOXO1,3,4:1.1933882352;ATF4:1.17278215757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15558623337;ESRRA:1.15426006835;PAX8:1.14292432194;GLI1..3:1.06585936546;HLF:1.03634845796;BACH2:0.987632095566;FOSL2:0.96265923676;ALX4:0.934934199555;ESR1:0.901724587124;FOS_FOS{B,L1}_JUN{B,D}:0.888581838413;TLX2:0.850158023801;RXRA_VDR{dimer}:0.829327254185;JUN:0.792846992305;HES1:0.775269794761;HMGA1,2:0.763628718964;NR6A1:0.726971421023;NFE2:0.722699207926;HOXA9_MEIS1:0.607132111647;PAX3,7:0.528818604637;HIF1A:0.496275157917;BPTF:0.457001487612;FOX{D1,D2}:0.452203079811;CDX1,2,4:0.388455147489;ATF2:0.359200377273;ATF6:0.354648449009;NFE2L2:0.260526024065;HBP1_HMGB_SSRP1_UBTF:0.238282521535;TAL1_TCF{3,4,12}:0.218971786411;MEF2{A,B,C,D}:0.217441954446;STAT2,4,6:0.182117493879;HOX{A5,B5}:0.166676141224;FOX{F1,F2,J1}:0.107806924309;NFE2L1:0.0697348098209;EN1,2:0.0540754127206;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0535577935353;AHR_ARNT_ARNT2:0.034728604237;OCT4_SOX2{dimer}:0.0316524247101;FOXQ1:0.00263183683088;ALX1:-0.00349156577378;HNF4A_NR2F1,2:-0.015600686889;HSF1,2:-0.0399431325351;RBPJ:-0.0474249176496;ZNF148:-0.0593055673406;FOXA2:-0.0681532138387;POU5F1:-0.0779376705542;STAT1,3:-0.10039881133;GATA4:-0.171137005516;PPARG:-0.18017454108;SRF:-0.181727470594;ZBTB16:-0.191713223553;EBF1:-0.209018206047;T:-0.215334938055;TFCP2:-0.234541244063;NR1H4:-0.257070307314;RXR{A,B,G}:-0.279308597994;FOXD3:-0.281414440875;RORA:-0.293152231715;POU2F1..3:-0.313203248586;MYB:-0.318498171187;PAX4:-0.343462297274;FOX{I1,J2}:-0.359951861787;ELK1,4_GABP{A,B1}:-0.361856494118;NKX2-2,8:-0.372241624956;GATA6:-0.378123859058;CRX:-0.385767603845;SPZ1:-0.407524775225;NR5A1,2:-0.433685448668;FOXP1:-0.434195493786;IKZF2:-0.449531258494;NFATC1..3:-0.450736657278;TFAP4:-0.458158034838;PAX1,9:-0.471621092318;SOX2:-0.486261390942;STAT5{A,B}:-0.534392128321;XBP1:-0.550177446699;VSX1,2:-0.5533046662;RFX1:-0.599434465448;PITX1..3:-0.601968339543;NHLH1,2:-0.603246772964;PRRX1,2:-0.603589537403;NANOG:-0.622382567176;PRDM1:-0.648076006778;MYFfamily:-0.659325445499;NKX3-1:-0.698535295967;TFAP2{A,C}:-0.723395149159;BREu{core}:-0.730960406737;REST:-0.783328389595;HNF1A:-0.798155194501;NKX2-3_NKX2-5:-0.829822816509;GCM1,2:-0.848837778166;IKZF1:-0.859534904299;MTF1:-0.879602236158;GZF1:-0.882783769919;MYOD1:-0.883609216644;FOXL1:-0.947901585622;EGR1..3:-0.955068667973;ZNF238:-0.957252249337;DBP:-0.965811023349;PAX5:-0.972261723994;TOPORS:-0.993768169233;ZIC1..3:-0.994242217919;E2F1..5:-1.00586000796;SMAD1..7,9:-1.01072583083;ADNP_IRX_SIX_ZHX:-1.01095411964;SOX{8,9,10}:-1.01133912748;RREB1:-1.0392870062;CUX2:-1.0719519781;ZEB1:-1.07645507887;PATZ1:-1.09649219473;YY1:-1.10443891154;MZF1:-1.10879366353;NFIX:-1.11972678268;NKX3-2:-1.12087863897;ZNF423:-1.13339184582;SOX5:-1.13878428101;PBX1:-1.14687286545;KLF4:-1.15218156132;SP1:-1.15491564054;HOX{A4,D4}:-1.1748368283;PDX1:-1.1791530227;MTE{core}:-1.18440110628;TBP:-1.19219350414;ZFP161:-1.215993822;AR:-1.24974703148;NFY{A,B,C}:-1.24981470234;MED-1{core}:-1.27520410488;TFAP2B:-1.2877179677;AIRE:-1.31249692568;NKX2-1,4:-1.33250092452;NKX6-1,2:-1.33424931726;LEF1_TCF7_TCF7L1,2:-1.34166746944;TP53:-1.36296766183;TLX1..3_NFIC{dimer}:-1.37720572204;ZBTB6:-1.37917906582;HOX{A6,A7,B6,B7}:-1.40944786441;bHLH_family:-1.41589384455;NR3C1:-1.42003776923;SNAI1..3:-1.42600388261;MYBL2:-1.43771592794;FOXM1:-1.44804766998;LHX3,4:-1.51063987426;MAZ:-1.5190392166;XCPE1{core}:-1.54258304099;TEAD1:-1.56102609924;EVI1:-1.5827531952;TFDP1:-1.59511014273;GTF2I:-1.59719315219;UFEwm:-1.60466135858;NRF1:-1.6145475072;HIC1:-1.62263089426;PAX6:-1.64902133252;ARID5B:-1.70486360245;LMO2:-1.70973187528;TBX4,5:-1.71021421895;ZNF384:-1.73385455171;GTF2A1,2:-1.74131224356;GFI1B:-1.75904052032;GFI1:-1.76421461984;POU1F1:-1.78985714683;ZNF143:-1.7905260872;CDC5L:-1.79999623995;ONECUT1,2:-1.8056510396;TEF:-1.85704247845;HAND1,2:-1.93170570505;POU6F1:-1.97160088316;SOX17:-2.06455267811;POU3F1..4:-2.55776597823 | |top_motifs=NFIL3:2.92818930641;SPIB:2.80457321506;SPI1:2.6659940963;IRF1,2:2.41615908422;NANOG{mouse}:2.26036746124;NFKB1_REL_RELA:2.17678732176;PAX2:2.1421770002;ETS1,2:2.03308674528;HMX1:1.97468732;ATF5_CREB3:1.92964020927;IRF7:1.81906063861;EP300:1.75273360733;DMAP1_NCOR{1,2}_SMARC:1.7479614368;TGIF1:1.71953815186;RUNX1..3:1.70621650153;ELF1,2,4:1.67615512262;MAFB:1.57120088577;SREBF1,2:1.52710294801;CEBPA,B_DDIT3:1.51108136544;FOXN1:1.4993130571;RFX2..5_RFXANK_RFXAP:1.46811361159;CREB1:1.38329128722;FOXP3:1.19858810346;FOXO1,3,4:1.1933882352;ATF4:1.17278215757;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15558623337;ESRRA:1.15426006835;PAX8:1.14292432194;GLI1..3:1.06585936546;HLF:1.03634845796;BACH2:0.987632095566;FOSL2:0.96265923676;ALX4:0.934934199555;ESR1:0.901724587124;FOS_FOS{B,L1}_JUN{B,D}:0.888581838413;TLX2:0.850158023801;RXRA_VDR{dimer}:0.829327254185;JUN:0.792846992305;HES1:0.775269794761;HMGA1,2:0.763628718964;NR6A1:0.726971421023;NFE2:0.722699207926;HOXA9_MEIS1:0.607132111647;PAX3,7:0.528818604637;HIF1A:0.496275157917;BPTF:0.457001487612;FOX{D1,D2}:0.452203079811;CDX1,2,4:0.388455147489;ATF2:0.359200377273;ATF6:0.354648449009;NFE2L2:0.260526024065;HBP1_HMGB_SSRP1_UBTF:0.238282521535;TAL1_TCF{3,4,12}:0.218971786411;MEF2{A,B,C,D}:0.217441954446;STAT2,4,6:0.182117493879;HOX{A5,B5}:0.166676141224;FOX{F1,F2,J1}:0.107806924309;NFE2L1:0.0697348098209;EN1,2:0.0540754127206;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0535577935353;AHR_ARNT_ARNT2:0.034728604237;OCT4_SOX2{dimer}:0.0316524247101;FOXQ1:0.00263183683088;ALX1:-0.00349156577378;HNF4A_NR2F1,2:-0.015600686889;HSF1,2:-0.0399431325351;RBPJ:-0.0474249176496;ZNF148:-0.0593055673406;FOXA2:-0.0681532138387;POU5F1:-0.0779376705542;STAT1,3:-0.10039881133;GATA4:-0.171137005516;PPARG:-0.18017454108;SRF:-0.181727470594;ZBTB16:-0.191713223553;EBF1:-0.209018206047;T:-0.215334938055;TFCP2:-0.234541244063;NR1H4:-0.257070307314;RXR{A,B,G}:-0.279308597994;FOXD3:-0.281414440875;RORA:-0.293152231715;POU2F1..3:-0.313203248586;MYB:-0.318498171187;PAX4:-0.343462297274;FOX{I1,J2}:-0.359951861787;ELK1,4_GABP{A,B1}:-0.361856494118;NKX2-2,8:-0.372241624956;GATA6:-0.378123859058;CRX:-0.385767603845;SPZ1:-0.407524775225;NR5A1,2:-0.433685448668;FOXP1:-0.434195493786;IKZF2:-0.449531258494;NFATC1..3:-0.450736657278;TFAP4:-0.458158034838;PAX1,9:-0.471621092318;SOX2:-0.486261390942;STAT5{A,B}:-0.534392128321;XBP1:-0.550177446699;VSX1,2:-0.5533046662;RFX1:-0.599434465448;PITX1..3:-0.601968339543;NHLH1,2:-0.603246772964;PRRX1,2:-0.603589537403;NANOG:-0.622382567176;PRDM1:-0.648076006778;MYFfamily:-0.659325445499;NKX3-1:-0.698535295967;TFAP2{A,C}:-0.723395149159;BREu{core}:-0.730960406737;REST:-0.783328389595;HNF1A:-0.798155194501;NKX2-3_NKX2-5:-0.829822816509;GCM1,2:-0.848837778166;IKZF1:-0.859534904299;MTF1:-0.879602236158;GZF1:-0.882783769919;MYOD1:-0.883609216644;FOXL1:-0.947901585622;EGR1..3:-0.955068667973;ZNF238:-0.957252249337;DBP:-0.965811023349;PAX5:-0.972261723994;TOPORS:-0.993768169233;ZIC1..3:-0.994242217919;E2F1..5:-1.00586000796;SMAD1..7,9:-1.01072583083;ADNP_IRX_SIX_ZHX:-1.01095411964;SOX{8,9,10}:-1.01133912748;RREB1:-1.0392870062;CUX2:-1.0719519781;ZEB1:-1.07645507887;PATZ1:-1.09649219473;YY1:-1.10443891154;MZF1:-1.10879366353;NFIX:-1.11972678268;NKX3-2:-1.12087863897;ZNF423:-1.13339184582;SOX5:-1.13878428101;PBX1:-1.14687286545;KLF4:-1.15218156132;SP1:-1.15491564054;HOX{A4,D4}:-1.1748368283;PDX1:-1.1791530227;MTE{core}:-1.18440110628;TBP:-1.19219350414;ZFP161:-1.215993822;AR:-1.24974703148;NFY{A,B,C}:-1.24981470234;MED-1{core}:-1.27520410488;TFAP2B:-1.2877179677;AIRE:-1.31249692568;NKX2-1,4:-1.33250092452;NKX6-1,2:-1.33424931726;LEF1_TCF7_TCF7L1,2:-1.34166746944;TP53:-1.36296766183;TLX1..3_NFIC{dimer}:-1.37720572204;ZBTB6:-1.37917906582;HOX{A6,A7,B6,B7}:-1.40944786441;bHLH_family:-1.41589384455;NR3C1:-1.42003776923;SNAI1..3:-1.42600388261;MYBL2:-1.43771592794;FOXM1:-1.44804766998;LHX3,4:-1.51063987426;MAZ:-1.5190392166;XCPE1{core}:-1.54258304099;TEAD1:-1.56102609924;EVI1:-1.5827531952;TFDP1:-1.59511014273;GTF2I:-1.59719315219;UFEwm:-1.60466135858;NRF1:-1.6145475072;HIC1:-1.62263089426;PAX6:-1.64902133252;ARID5B:-1.70486360245;LMO2:-1.70973187528;TBX4,5:-1.71021421895;ZNF384:-1.73385455171;GTF2A1,2:-1.74131224356;GFI1B:-1.75904052032;GFI1:-1.76421461984;POU1F1:-1.78985714683;ZNF143:-1.7905260872;CDC5L:-1.79999623995;ONECUT1,2:-1.8056510396;TEF:-1.85704247845;HAND1,2:-1.93170570505;POU6F1:-1.97160088316;SOX17:-2.06455267811;POU3F1..4:-2.55776597823 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11801-124D1;search_select_hide=table117:FF:11801-124D1 | |||
}} | }} |
Latest revision as of 18:21, 4 June 2020
Name: | CD14+CD16+ Monocytes, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13208 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13208
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13208
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.14 |
10 | 10 | 0.0245 |
100 | 100 | 0.992 |
101 | 101 | 0.753 |
102 | 102 | 0.652 |
103 | 103 | 0.262 |
104 | 104 | 0.531 |
105 | 105 | 0.126 |
106 | 106 | 0.00534 |
107 | 107 | 0.437 |
108 | 108 | 0.707 |
109 | 109 | 0.0479 |
11 | 11 | 0.183 |
110 | 110 | 0.235 |
111 | 111 | 0.0335 |
112 | 112 | 0.226 |
113 | 113 | 0.612 |
114 | 114 | 0.014 |
115 | 115 | 0.185 |
116 | 116 | 0.956 |
117 | 117 | 0.0289 |
118 | 118 | 0.0852 |
119 | 119 | 0.331 |
12 | 12 | 0.272 |
120 | 120 | 0.7 |
121 | 121 | 0.688 |
122 | 122 | 0.596 |
123 | 123 | 0.0291 |
124 | 124 | 0.93 |
125 | 125 | 0.147 |
126 | 126 | 0.13 |
127 | 127 | 0.33 |
128 | 128 | 0.0909 |
129 | 129 | 0.962 |
13 | 13 | 0.0784 |
130 | 130 | 0.432 |
131 | 131 | 0.831 |
132 | 132 | 0.0339 |
133 | 133 | 0.443 |
134 | 134 | 0.686 |
135 | 135 | 0.119 |
136 | 136 | 0.739 |
137 | 137 | 4.57357e-4 |
138 | 138 | 0.245 |
139 | 139 | 0.0493 |
14 | 14 | 0.41 |
140 | 140 | 0.151 |
141 | 141 | 0.65 |
142 | 142 | 0.517 |
143 | 143 | 0.123 |
144 | 144 | 0.865 |
145 | 145 | 0.554 |
146 | 146 | 0.897 |
147 | 147 | 0.46 |
148 | 148 | 0.00904 |
149 | 149 | 0.668 |
15 | 15 | 0.14 |
150 | 150 | 0.504 |
151 | 151 | 0.327 |
152 | 152 | 0.215 |
153 | 153 | 0.91 |
154 | 154 | 0.897 |
155 | 155 | 0.199 |
156 | 156 | 0.949 |
157 | 157 | 0.951 |
158 | 158 | 0.0918 |
159 | 159 | 0.416 |
16 | 16 | 0.413 |
160 | 160 | 0.439 |
161 | 161 | 0.422 |
162 | 162 | 0.428 |
163 | 163 | 0.933 |
164 | 164 | 0.0934 |
165 | 165 | 0.0461 |
166 | 166 | 0.532 |
167 | 167 | 0.134 |
168 | 168 | 0.206 |
169 | 169 | 0.0147 |
17 | 17 | 0.28 |
18 | 18 | 0.188 |
19 | 19 | 0.297 |
2 | 2 | 0.968 |
20 | 20 | 0.343 |
21 | 21 | 0.667 |
22 | 22 | 0.198 |
23 | 23 | 0.153 |
24 | 24 | 0.266 |
25 | 25 | 0.199 |
26 | 26 | 0.0702 |
27 | 27 | 0.792 |
28 | 28 | 0.551 |
29 | 29 | 0.0745 |
3 | 3 | 0.089 |
30 | 30 | 0.391 |
31 | 31 | 0.702 |
32 | 32 | 0.596 |
33 | 33 | 0.178 |
34 | 34 | 0.582 |
35 | 35 | 0.15 |
36 | 36 | 0.0487 |
37 | 37 | 0.0632 |
38 | 38 | 0.469 |
39 | 39 | 0.742 |
4 | 4 | 0.844 |
40 | 40 | 0.106 |
41 | 41 | 0.0223 |
42 | 42 | 0.349 |
43 | 43 | 0.0545 |
44 | 44 | 0.825 |
45 | 45 | 0.862 |
46 | 46 | 0.151 |
47 | 47 | 0.516 |
48 | 48 | 0.474 |
49 | 49 | 0.123 |
5 | 5 | 0.124 |
50 | 50 | 0.993 |
51 | 51 | 0.362 |
52 | 52 | 0.383 |
53 | 53 | 0.356 |
54 | 54 | 0.507 |
55 | 55 | 0.715 |
56 | 56 | 0.81 |
57 | 57 | 0.865 |
58 | 58 | 0.0704 |
59 | 59 | 0.112 |
6 | 6 | 0.886 |
60 | 60 | 0.0387 |
61 | 61 | 0.214 |
62 | 62 | 0.0292 |
63 | 63 | 0.518 |
64 | 64 | 0.375 |
65 | 65 | 0.253 |
66 | 66 | 0.15 |
67 | 67 | 0.316 |
68 | 68 | 0.527 |
69 | 69 | 0.7 |
7 | 7 | 0.168 |
70 | 70 | 0.0166 |
71 | 71 | 0.0358 |
72 | 72 | 0.223 |
73 | 73 | 0.121 |
74 | 74 | 0.044 |
75 | 75 | 0.0602 |
76 | 76 | 0.22 |
77 | 77 | 0.526 |
78 | 78 | 0.13 |
79 | 79 | 0.299 |
8 | 8 | 0.428 |
80 | 80 | 0.253 |
81 | 81 | 0.196 |
82 | 82 | 0.142 |
83 | 83 | 0.326 |
84 | 84 | 0.527 |
85 | 85 | 0.0455 |
86 | 86 | 0.107 |
87 | 87 | 0.253 |
88 | 88 | 0.51 |
89 | 89 | 0.452 |
9 | 9 | 0.253 |
90 | 90 | 0.255 |
91 | 91 | 0.448 |
92 | 92 | 0.526 |
93 | 93 | 0.506 |
94 | 94 | 0.0287 |
95 | 95 | 0.0595 |
96 | 96 | 0.319 |
97 | 97 | 0.856 |
98 | 98 | 0.0865 |
99 | 99 | 0.0254 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13208
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011112 (CD14-positiveCD16-positive Monocytes)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)