FF:12142-128E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005561 | |||
|accession_numbers=CAGE;DRX008078;DRR008950;DRZ000375;DRZ001760;DRZ011725;DRZ013110 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.28!189.34!SOX15;;chr1:6479968..6479986,-!p1@HES2!2.15!141.54!HES2;;chr1:209979467..209979494,-!p1@IRF6!2.01!113.42!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!2.00!98.42!ZBED2;;chr11:34642612..34642646,+!p1@EHF!1.96!89.98!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.88!74.05!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.45!27.18!TP63;;chr15:83953397..83953425,-!p1@BNC1!1.44!29.99!BNC1;;chr17:7492684..7492778,-!p2@SOX15!1.40!50.62!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.18!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.37!22.50!SPDEF;;chr3:111314230..111314241,-!p2@ZBED2!1.33!20.62!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.68!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.87!SOX7;;chr6:10412600..10412637,-!p1@TFAP2A!1.24!27.18!TFAP2A;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.17!SNAI2;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.62!ZNF385A;;chr1:209979375..209979386,-!p4@IRF6!1.15!13.12!IRF6;;chr11:65686802..65686818,+!p6@DRAP1!1.11!20.62!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!1.05!15.93!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.05!10.31!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.37!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.02!9.37!ZFP42;;chr11:34642656..34642667,+!p2@EHF!1.02!9.37!EHF;;chr12:66218836..66218888,+!p1@HMGA2!1.01!88.11!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!0.93!7.50!ZNF323;;chr6:34524025..34524045,-!p3@SPDEF!0.93!7.50!SPDEF;;chr4:57547454..57547469,-!p1@HOPX!0.93!7.50!HOPX;;chr8:49833978..49833996,-!p1@SNAI2!0.92!157.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.62!EPAS1;;chr16:67881588..67881612,-!p2@CENPT!0.89!9.37!CENPT;;chr17:46621101..46621143,-!p7@HOXB2!0.89!9.37!HOXB2;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.37!RUNX1;;chr15:101069113..101069169,-!p1@CERS3!0.88!6.56!CERS3;;chr17:7492979..7492991,-!p5@SOX15!0.88!6.56!SOX15;;chr17:3571863..3571881,-!p1@TAX1BP3!0.85!460.23!TAX1BP3;;chr15:83953373..83953386,-!p2@BNC1!0.82!5.62!BNC1;;chr2:113994526..113994556,-!p3@PAX8!0.82!5.62!PAX8;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.62!PITX2;;chr5:134369879..134369898,-!p2@PITX1!0.82!5.62!PITX1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.62!IRX1;;chr5:3595977..3595999,+!p1@IRX1!0.82!5.62!IRX1;;chr6:34524049..34524089,-!p2@SPDEF!0.82!5.62!SPDEF;;chr8:102504651..102504683,+!p1@GRHL2!0.82!5.62!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.62!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.25!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.37!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.80!8.44!ZBTB38;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.00!HOXB2;;chrX:56258844..56258882,+!p1@KLF8!0.75!6.56!KLF8;;chr4:111558135..111558198,-!p2@PITX2!0.75!4.69!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.75!4.69!ZNF365;;chr5:2751785..2751808,-!p2@IRX2!0.75!4.69!IRX2;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.69!ZNF323;;chr18:3449720..3449749,+!p2@TGIF1!0.74!10.31!TGIF1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.12!PPP1R13L;;chr19:58326246..58326262,-!p2@ZNF552!0.73!11.25!ZNF552;;chr6:1312325..1312340,+!p1@FOXQ1!0.73!7.50!FOXQ1;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.62!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.56!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.69!53.43!MLLT11;;chr11:65687362..65687436,+!p3@DRAP1!0.68!19.68!DRAP1;;chr16:67881617..67881626,-!p6@CENPT!0.68!3.75!CENPT;;chr1:209979449..209979460,-!p3@IRF6!0.68!3.75!IRF6;;chr2:113994491..113994515,-!p7@PAX8!0.68!3.75!PAX8;;chr9:35732647..35732678,+!p2@CREB3!0.67!23.43!CREB3;;chr3:37217736..37217753,-!p2@LRRFIP2!0.66!16.87!LRRFIP2;;chr19:57792157..57792170,+!p6@ZNF460!0.66!5.62!ZNF460;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.62!ETV4;;chr17:47492252..47492265,-!p2@PHB!0.64!15.93!PHB;;chr2:70314240..70314256,+!p4@PCBP1!0.63!7.50!PCBP1;;chr11:6947647..6947698,+!p2@ZNF215!0.63!4.69!ZNF215;;chr12:72056800..72056834,+!p1@THAP2!0.63!4.69!THAP2;;chr7:106809470..106809481,+!p2@HBP1!0.62!4.69!HBP1;;chr19:37341160..37341194,-!p2@ZNF790!0.61!7.50!ZNF790;;chr3:32023232..32023273,+!p1@ZNF860!0.61!4.69!ZNF860;;chr6:28234822..28234836,+!p1@ZNF187!0.60!4.69!ZNF187;;chr6:126240356..126240379,+!p7@NCOA7!0.59!3.75!NCOA7;;chr1:935398..935465,-!p2@HES4!0.58!6.56!HES4;;chr1:158985493..158985535,+!p4@IFI16!0.58!4.69!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.58!3.75!TFAP2C;;chr19:9811347..9811351,-!p1@ZNF812!0.58!2.81!ZNF812;;chr15:83953474..83953483,-!p3@BNC1!0.58!2.81!BNC1;;chr17:41622982..41623001,-!p11@ETV4!0.58!2.81!ETV4;;chrX:56258900..56258917,+!p4@KLF8!0.58!2.81!KLF8;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.81!HMGA2;;chr5:134370033..134370042,-!p5@PITX1!0.58!2.81!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.58!2.81!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.58!2.81!TFAP2A;;chr8:102216978..102217003,-!p4@ZNF706!0.58!2.81!ZNF706;;chr8:71157595..71157616,-!p13@NCOA2!0.58!2.81!NCOA2;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.81!TBX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.58!2.81!TFCP2L1;;chr3:170076246..170076261,+!p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0.09!0.94!RERE;;chr21:36260295..36260310,-!p3@RUNX1!0.09!0.94!RUNX1;;chr5:178287021..178287042,+!p2@ZNF354B!0.09!0.94!ZNF354B;;chr6:21597370..21597408,+!p5@SOX4!0.09!0.94!SOX4;;chr6:27356745..27356777,+!p1@ZNF391!0.09!0.94!ZNF391;;chr18:74072572..74072588,-!p2@ZNF516!0.09!0.94!ZNF516;;chr2:74730430..74730451,-!p1@LBX2!0.09!0.94!LBX2;;chr3:150126101..150126118,+!p6@TSC22D2!0.09!0.94!TSC22D2;;chr3:71114279..71114308,-!p13@FOXP1!0.09!0.94!FOXP1;;chrX:119384566..119384585,+!p2@ZBTB33!0.09!0.94!ZBTB33;;chr4:41992513..41992561,+!p1@SLC30A9!0.08!70.30!SLC30A9;;chr17:40719102..40719141,+!p1@MLX!0.08!34.68!MLX;;chr5:16465902..16465917,-!p1@ZNF622!0.08!25.31!ZNF622;;chr6:7107939..7107993,+!p1@RREB1!0.08!12.19!RREB1;;chr19:21203451..21203475,+!p1@ZNF430!0.08!10.31!ZNF430;;chr7:1570322..1570360,+!p1@MAFK!0.08!8.44!MAFK;;chr11:64072981..64073005,+!p2@ESRRA!0.08!6.56!ESRRA;;chr1:155532531..155532605,-!p1@ASH1L!0.08!6.56!ASH1L;;chr11:129872712..129872755,-!p1@PRDM10!0.08!3.75!PRDM10;;chr16:31085514..31085576,-!p1@ZNF668!0.08!3.75!ZNF668;;chr7:138666053..138666146,-!p1@KIAA1549!0.08!3.75!KIAA1549;;chr19:37709076..37709154,+!p1@ZNF383!0.08!2.81!ZNF383;;chr1:8585945..8586056,-!p3@RERE!0.08!2.81!RERE;;chr19:53662295..53662319,-!p1@ZNF347!0.08!1.87!ZNF347;;chr19:58920102..58920149,+!p2@ZNF584!0.08!1.87!ZNF584;;chr1:211432823..211432851,+!p3@RCOR3!0.08!1.87!RCOR3;;chr20:48808114..48808168,+!p5@CEBPB!0.08!1.87!CEBPB;;chr19:37329254..37329295,-!p1@ZNF790!0.08!1.87!ZNF790;;chr14:89029308..89029318,+!p3@ZC3H14!0.08!0.94!ZC3H14;;chr16:1429674..1429703,-!p3@UNKL!0.08!0.94!UNKL;;chr16:29818199..29818216,+!p11@MAZ!0.08!0.94!MAZ;;chr17:17723746..17723766,-!p5@SREBF1!0.08!0.94!SREBF1;;chr18:47814010..47814021,-!p3@CXXC1!0.08!0.94!CXXC1;;chr19:36980756..36980795,-!p3@ZNF566!0.08!0.94!ZNF566;;chr19:44598560..44598576,+!p3@ZNF224!0.08!0.94!ZNF224;;chr1:151032922..151032951,+!p2@MLLT11!0.08!0.94!MLLT11;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.08!0.94!ELK4;;chr20:48807615..48807644,+!p6@CEBPB!0.08!0.94!CEBPB;;chr20:48807779..48807802,+!p10@CEBPB!0.08!0.94!CEBPB;;chr6:1610293..1610310,+!p1@FOXC1!0.08!0.94!FOXC1;;chr7:137564372..137564394,-!p7@CREB3L2!0.08!0.94!CREB3L2;;chr14:64971014..64971044,+!p4@ZBTB1!0.08!0.94!ZBTB1;;chr3:71630690..71630750,-!p11@FOXP1!0.08!0.94!FOXP1;;chr2:48541789..48541874,+!p1@FOXN2!0.07!23.43!FOXN2;;chr18:47807845..47807918,-!p1@MBD1!0.07!17.81!MBD1;;chr6:155635583..155635644,-!p1@TFB1M!0.07!13.12!TFB1M;;chr1:59249732..59249749,-!p2@JUN!0.07!12.19!JUN;;chr6:116989916..116989979,-!p1@ZUFSP!0.07!9.37!ZUFSP;;chr19:1863591..1863611,-!p2@KLF16!0.07!9.37!KLF16;;chr15:50647274..50647336,-!p1@GABPB1!0.07!6.56!GABPB1;;chr6:43138999..43139017,+!p2@SRF!0.07!5.62!SRF;;chr4:4291944..4292011,+!p1@ZBTB49!0.07!4.69!ZBTB49;;chr12:3069037..3069119,+!p2@TEAD4!0.07!2.81!TEAD4;;chr11:65430554..65430579,-!p3@RELA!0.07!1.87!RELA;;chr19:20150301..20150321,-!p1@ZNF682!0.07!1.87!ZNF682;;chr17:7382891..7382905,-!p7@ZBTB4!0.07!0.94!ZBTB4;;chr17:79885633..79885645,-!p4@MAFG!0.07!0.94!MAFG;;chr19:12075844..12075880,+!p3@ZNF763!0.07!0.94!ZNF763;;chr19:17356436..17356481,-!p3@NR2F6!0.07!0.94!NR2F6;;chr19:3572908..3572917,+!p3@HMG20B!0.07!0.94!HMG20B;;chr10:114710060..114710069,+!p5@TCF7L2!0.07!0.94!TCF7L2;;chr10:22292675..22292686,-!p3@DNAJC1!0.07!0.94!DNAJC1;;chr10:43932553..43932571,+!p2@ZNF487P!0.07!0.94!ZNF487P;;chr11:67007522..67007533,+!p5@KDM2A!0.07!0.94!KDM2A;;chr13:41635104..41635124,-!p6@ELF1!0.07!0.94!ELF1;;chr9:4299552..4299598,-!p5@GLIS3!0.07!0.94!GLIS3;;chr13:114238997..114239077,+!p1@TFDP1!0.06!51.55!TFDP1;;chr5:150080543..150080664,-!p1@RBM22!0.06!44.05!RBM22;;chr18:51750948..51751059,-!p1@MBD2!0.06!32.81!MBD2;;chr7:44143925..44143970,+!p1@AEBP1!0.06!22.50!AEBP1;;chr7:111846741..111846776,+!p1@ZNF277!0.06!20.62!ZNF277;; | |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.28!189.34!SOX15;;chr1:6479968..6479986,-!p1@HES2!2.15!141.54!HES2;;chr1:209979467..209979494,-!p1@IRF6!2.01!113.42!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!2.00!98.42!ZBED2;;chr11:34642612..34642646,+!p1@EHF!1.96!89.98!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.88!74.05!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.45!27.18!TP63;;chr15:83953397..83953425,-!p1@BNC1!1.44!29.99!BNC1;;chr17:7492684..7492778,-!p2@SOX15!1.40!50.62!SOX15;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.18!TFAP2A;;chr6:34524093..34524135,-!p1@SPDEF!1.37!22.50!SPDEF;;chr3:111314230..111314241,-!p2@ZBED2!1.33!20.62!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.26!19.68!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.87!SOX7;;chr6:10412600..10412637,-!p1@TFAP2A!1.24!27.18!TFAP2A;;chr8:49833948..49833973,-!p2@SNAI2!1.17!87.17!SNAI2;;chr12:54785074..54785122,-!p2@ZNF385A!1.16!20.62!ZNF385A;;chr1:209979375..209979386,-!p4@IRF6!1.15!13.12!IRF6;;chr11:65686802..65686818,+!p6@DRAP1!1.11!20.62!DRAP1;;chr5:134369905..134369972,-!p1@PITX1!1.05!15.93!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.05!10.31!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.37!IRX2;;chr4:188916918..188916942,+!p1@ZFP42!1.02!9.37!ZFP42;;chr11:34642656..34642667,+!p2@EHF!1.02!9.37!EHF;;chr12:66218836..66218888,+!p1@HMGA2!1.01!88.11!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!0.93!7.50!ZNF323;;chr6:34524025..34524045,-!p3@SPDEF!0.93!7.50!SPDEF;;chr4:57547454..57547469,-!p1@HOPX!0.93!7.50!HOPX;;chr8:49833978..49833996,-!p1@SNAI2!0.92!157.47!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.62!EPAS1;;chr16:67881588..67881612,-!p2@CENPT!0.89!9.37!CENPT;;chr17:46621101..46621143,-!p7@HOXB2!0.89!9.37!HOXB2;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.37!RUNX1;;chr15:101069113..101069169,-!p1@CERS3!0.88!6.56!CERS3;;chr17:7492979..7492991,-!p5@SOX15!0.88!6.56!SOX15;;chr17:3571863..3571881,-!p1@TAX1BP3!0.85!460.23!TAX1BP3;;chr15:83953373..83953386,-!p2@BNC1!0.82!5.62!BNC1;;chr2:113994526..113994556,-!p3@PAX8!0.82!5.62!PAX8;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.62!PITX2;;chr5:134369879..134369898,-!p2@PITX1!0.82!5.62!PITX1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.62!IRX1;;chr5:3595977..3595999,+!p1@IRX1!0.82!5.62!IRX1;;chr6:34524049..34524089,-!p2@SPDEF!0.82!5.62!SPDEF;;chr8:102504651..102504683,+!p1@GRHL2!0.82!5.62!GRHL2;;chrY:21906594..21906622,-!p1@KDM5D!0.82!5.62!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.25!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.37!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.80!8.44!ZBTB38;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.00!HOXB2;;chrX:56258844..56258882,+!p1@KLF8!0.75!6.56!KLF8;;chr4:111558135..111558198,-!p2@PITX2!0.75!4.69!PITX2;;chr10:64018918..64018936,+!p2@ZNF365!0.75!4.69!ZNF365;;chr5:2751785..2751808,-!p2@IRX2!0.75!4.69!IRX2;;chr6:28321971..28321995,-!p1@ZNF323!0.75!4.69!ZNF323;;chr18:3449720..3449749,+!p2@TGIF1!0.74!10.31!TGIF1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.12!PPP1R13L;;chr19:58326246..58326262,-!p2@ZNF552!0.73!11.25!ZNF552;;chr6:1312325..1312340,+!p1@FOXQ1!0.73!7.50!FOXQ1;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.62!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.56!FOXD1;;chr1:151032860..151032918,+!p1@MLLT11!0.69!53.43!MLLT11;;chr11:65687362..65687436,+!p3@DRAP1!0.68!19.68!DRAP1;;chr16:67881617..67881626,-!p6@CENPT!0.68!3.75!CENPT;;chr1:209979449..209979460,-!p3@IRF6!0.68!3.75!IRF6;;chr2:113994491..113994515,-!p7@PAX8!0.68!3.75!PAX8;;chr9:35732647..35732678,+!p2@CREB3!0.67!23.43!CREB3;;chr3:37217736..37217753,-!p2@LRRFIP2!0.66!16.87!LRRFIP2;;chr19:57792157..57792170,+!p6@ZNF460!0.66!5.62!ZNF460;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.62!ETV4;;chr17:47492252..47492265,-!p2@PHB!0.64!15.93!PHB;;chr2:70314240..70314256,+!p4@PCBP1!0.63!7.50!PCBP1;;chr11:6947647..6947698,+!p2@ZNF215!0.63!4.69!ZNF215;;chr12:72056800..72056834,+!p1@THAP2!0.63!4.69!THAP2;;chr7:106809470..106809481,+!p2@HBP1!0.62!4.69!HBP1;;chr19:37341160..37341194,-!p2@ZNF790!0.61!7.50!ZNF790;;chr3:32023232..32023273,+!p1@ZNF860!0.61!4.69!ZNF860;;chr6:28234822..28234836,+!p1@ZNF187!0.60!4.69!ZNF187;;chr6:126240356..126240379,+!p7@NCOA7!0.59!3.75!NCOA7;;chr1:935398..935465,-!p2@HES4!0.58!6.56!HES4;;chr1:158985493..158985535,+!p4@IFI16!0.58!4.69!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.58!3.75!TFAP2C;;chr19:9811347..9811351,-!p1@ZNF812!0.58!2.81!ZNF812;;chr15:83953474..83953483,-!p3@BNC1!0.58!2.81!BNC1;;chr17:41622982..41623001,-!p11@ETV4!0.58!2.81!ETV4;;chrX:56258900..56258917,+!p4@KLF8!0.58!2.81!KLF8;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.81!HMGA2;;chr5:134370033..134370042,-!p5@PITX1!0.58!2.81!PITX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.58!2.81!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.58!2.81!TFAP2A;;chr8:102216978..102217003,-!p4@ZNF706!0.58!2.81!ZNF706;;chr8:71157595..71157616,-!p13@NCOA2!0.58!2.81!NCOA2;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.81!TBX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.58!2.81!TFCP2L1;;chr3:170076246..170076261,+!p8@SKIL!0.58!2.81!SKIL;;chr3:18480217..18480239,-!p3@SATB1!0.58!2.81!SATB1;;chr3:69811858..69811881,+!p5@MITF!0.58!2.81!MITF;;chr3:69811882..69811898,+!p6@MITF!0.58!2.81!MITF;;chr2:208394817..208394834,+!p3@CREB1!0.57!13.12!CREB1;;chr19:9785724..9785740,-!p2@ZNF562!0.57!13.12!ZNF562;;chr12:7079780..7079791,-!p2@PHB2!0.56!16.87!PHB2;;chr14:62162285..62162296,+!p3@HIF1A!0.56!16.87!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.56!12.19!FOSL1;;chr19:57791876..57791892,+!p5@ZNF460!0.56!4.69!ZNF460;;chr10:3827389..3827408,-!p1@KLF6!0.55!250.27!KLF6;;chr1:158979872..158979898,+!p3@IFI16!0.55!9.37!IFI16;;chr1:37940170..37940190,+!p1@ZC3H12A!0.54!38.43!ZC3H12A;;chr15:67418119..67418162,+!p5@SMAD3!0.54!2.81!SMAD3;;chr9:35732514..35732530,+!p5@CREB3!0.53!3.75!CREB3;;chr13:73633131..73633149,+!p1@KLF5!0.52!31.87!KLF5;;chr14:21566731..21566836,-!p1@ZNF219!0.52!31.87!ZNF219;;chr1:158979792..158979814,+!p2@IFI16!0.52!28.12!IFI16;;chr12:27485762..27485776,+!p3@ARNTL2!0.52!7.50!ARNTL2;;chr12:66218212..66218244,+!p5@HMGA2!0.52!3.75!HMGA2;;chr11:47237922..47237964,+!p4@DDB2!0.52!2.81!DDB2;;chr2:231084820..231084836,-!p5@SP110!0.52!2.81!SP110;;chr10:51565239..51565263,+!p2@NCOA4!0.51!69.36!NCOA4;;chr17:70117153..70117174,+!p1@SOX9!0.51!29.99!SOX9;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.51!18.75!SOX7;;chr7:99156145..99156207,+!p5@ZNF655!0.51!9.37!ZNF655;;chr12:133614119..133614136,+!p5@ZNF84!0.51!2.81!ZNF84;;chr13:41593425..41593480,-!p1@ELF1!0.50!17.81!ELF1;;chr2:74375058..74375069,-!p3@BOLA3!0.50!4.69!BOLA3;;chr12:66218378..66218401,+!p6@HMGA2!0.50!3.75!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.50!3.75!ZNF702P;;chr4:81104985..81105005,+!p4@PRDM8!0.50!2.81!PRDM8;;chr11:65667846..65667868,-!p1@FOSL1!0.49!74.05!FOSL1;;chr19:45579725..45579743,-!p1@ZNF296!0.49!12.19!ZNF296;;chr1:26496459..26496470,+!p2@ZNF593!0.49!4.69!ZNF593;;chr20:50721803..50721857,-!p2@ZFP64!0.49!3.75!ZFP64;;chr3:37218023..37218069,-!p3@LRRFIP2!0.49!3.75!LRRFIP2;;chr14:62162258..62162269,+!p2@HIF1A!0.48!26.25!HIF1A;;chr19:12551785..12551823,-!p1@ZNF443!0.48!3.75!ZNF443;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.81!AEBP1;;chr19:50431973..50431998,+!p5@ATF5!0.48!2.81!ATF5;;chr1:151032782..151032801,+!p4@MLLT11!0.47!4.69!MLLT11;;chr15:96875657..96875760,+!p14@NR2F2!0.47!3.75!NR2F2;;chr17:46621311..46621332,-!p8@HOXB2!0.47!2.81!HOXB2;;chr19:9649253..9649265,-!p3@ZNF426!0.47!2.81!ZNF426;;chr2:74374995..74375055,-!p1@BOLA3!0.46!116.23!BOLA3;;chr11:65687243..65687276,+!p8@DRAP1!0.46!2.81!DRAP1;;chr10:126138597..126138612,-!p1@NKX1-2!0.46!1.87!NKX1-2;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.46!1.87!PRDM11;;chr12:54694653..54694672,-!p2@NFE2!0.46!1.87!NFE2;;chr12:66218904..66218913,+!p11@HMGA2!0.46!1.87!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.46!1.87!PAWR;;chr12:80084701..80084710,-!p20@PAWR!0.46!1.87!PAWR;;chr13:41593493..41593506,-!p8@ELF1!0.46!1.87!ELF1;;chr13:45009301..45009320,-!p7@TSC22D1!0.46!1.87!TSC22D1;;chr14:74256787..74256858,-!p6@C14orf43!0.46!1.87!C14orf43;;chr1:151032957..151032968,+!p7@MLLT11!0.46!1.87!MLLT11;;chr1:153940716..153940739,+!p4@CREB3L4!0.46!1.87!CREB3L4;;chr1:2461692..2461710,-!p1@HES5!0.46!1.87!HES5;;chr20:18038521..18038571,-!p1@OVOL2!0.46!1.87!OVOL2;;chr20:22565185..22565223,-!p3@FOXA2!0.46!1.87!FOXA2;;chr20:50722202..50722217,-!p7@ZFP64!0.46!1.87!ZFP64;;chr21:36260325..36260341,-!p14@RUNX1!0.46!1.87!RUNX1;;chr21:36421347..36421380,-!p8@RUNX1!0.46!1.87!RUNX1;;chr15:83953782..83953786,-!p5@BNC1!0.46!1.87!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.46!1.87!ZNF668;;chr16:79634581..79634592,-!p4@MAF!0.46!1.87!MAF;;chr16:86612320..86612394,+!p1@FOXL1!0.46!1.87!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.46!1.87!HOXB2;;chr17:46621279..46621297,-!p13@HOXB2!0.46!1.87!HOXB2;;chr17:46622175..46622186,-!p12@HOXB2!0.46!1.87!HOXB2;;chr19:13135914..13135942,+!p19@NFIX!0.46!1.87!NFIX;;chr5:134369643..134369675,-!p4@PITX1!0.46!1.87!PITX1;;chr5:134369973..134369984,-!p3@PITX1!0.46!1.87!PITX1;;chr5:3595961..3595975,+!p3@IRX1!0.46!1.87!IRX1;;chr6:10412640..10412655,-!p14@TFAP2A!0.46!1.87!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.46!1.87!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.46!1.87!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.46!1.87!ZNF165;;chr8:102504690..102504704,+!p3@GRHL2!0.46!1.87!GRHL2;;chr22:46567171..46567203,+!p6@PPARA!0.46!1.87!PPARA;;chr2:113999360..113999386,-!p4@PAX8!0.46!1.87!PAX8;;chr3:138665969..138665993,-!p2@FOXL2!0.46!1.87!FOXL2;;chr3:141121820..141121838,+!p9@ZBTB38!0.46!1.87!ZBTB38;;chr3:141121871..141121885,+!p13@ZBTB38!0.46!1.87!ZBTB38;;chrX:56259316..56259331,+!p6@KLF8!0.46!1.87!KLF8;;chrY:2803415..2803468,+!p1@ZFY!0.46!1.87!ZFY;;chr2:46524878..46524891,+!p3@EPAS1!0.45!3.75!EPAS1;;chr6:27356527..27356557,+!p2@ZNF391!0.45!2.81!ZNF391;;chr16:8962853..8962878,-!p1@CARHSP1!0.44!147.16!CARHSP1;;chr12:27485785..27485816,+!p1@ARNTL2!0.44!16.87!ARNTL2;;chr8:57123873..57123894,-!p2@PLAG1!0.44!2.81!PLAG1;;chr8:128748308..128748324,+!p2@MYC!0.43!67.49!MYC;;chr11:47236584..47236679,+!p1@DDB2!0.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000221 | |ffid_belonging_in_development=CL:0000221 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mallassez-derived%2520cells%252c%2520donor1%2520%2528MZH3%2529.CNhs12538.12142-128E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12142-128E9 | |id=FF:12142-128E9 | ||
|is_a=EFO:0002091;;FF:0000087 | |is_a=EFO:0002091;;FF:0000087 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12538 | |||
|library_id_phase_based=2:CNhs12538 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12142 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12142 | |||
|name=Mallassez-derived cells, donor1 (MZH3) | |name=Mallassez-derived cells, donor1 (MZH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12538,LSID920,release012,COMPLETED | |profile_hcage=CNhs12538,LSID920,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.143602736613037,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.75485968386931,0,1.05349031819397,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,1.05349031819397,0,-0.174425742109917,0,0,0,1.05349031819397,0,0,0,0,0.119387715500203,0,0,0,0,0,-0.0382700056703111,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.203236562094724,0,0,0,0,0,0,-0.161194318099204,0,0,0,-0.0569510154803932,-0.067594666082831,0,0,0,0,0.189170121988369,0.0051255358121425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.194931483635338,-0.203309002532207,0,0,0,0,0,0 | |||
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| |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
Line 58: | Line 76: | ||
|rna_rin=10 | |rna_rin=10 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.28E+11 | ||
|rna_weight_ug=0.56 | |rna_weight_ug=0.56 | ||
|sample_age=22 years old adult | |sample_age=22 years old adult | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 101: | ||
|top_motifs=TP53:2.11589327835;ADNP_IRX_SIX_ZHX:1.78418571308;TBP:1.70690656324;ZEB1:1.50548108127;SNAI1..3:1.32096185134;TBX4,5:1.30318772128;VSX1,2:1.22303851588;NKX2-3_NKX2-5:1.21886514211;NKX2-2,8:1.21320330146;PDX1:1.1159132172;NFIX:1.08832232372;TEF:1.05655898704;MYOD1:1.04283031085;HIF1A:1.02141106363;HAND1,2:0.977528012111;ONECUT1,2:0.890745967366;NFIL3:0.888261320386;PPARG:0.855218685204;NANOG:0.837998009456;TEAD1:0.822132298449;FOS_FOS{B,L1}_JUN{B,D}:0.801365952326;CDC5L:0.783572594058;HSF1,2:0.770827418552;ELK1,4_GABP{A,B1}:0.739959242921;NKX3-2:0.727218485121;NR5A1,2:0.697617260164;BACH2:0.675720324134;TFCP2:0.668529126281;PAX4:0.667761487141;FOSL2:0.590430451627;HES1:0.562005077917;HOX{A5,B5}:0.554781029046;POU3F1..4:0.553073291616;HOX{A4,D4}:0.551685238075;ZNF148:0.534286988288;MTF1:0.511254897144;CRX:0.506088021157;FOXL1:0.475163857113;ZNF238:0.463969702387;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.441620447589;HLF:0.424363182369;bHLH_family:0.408061170791;FOX{I1,J2}:0.402527702385;LMO2:0.39261000977;SOX17:0.389585036852;NFE2:0.384815032611;CEBPA,B_DDIT3:0.324333763234;FOXQ1:0.309153772734;OCT4_SOX2{dimer}:0.308851103633;NFE2L1:0.299339376078;SOX2:0.298336977934;GZF1:0.295269694504;POU1F1:0.293438972984;FOX{F1,F2,J1}:0.232736414361;SMAD1..7,9:0.227074090674;GFI1B:0.198198847214;MAFB:0.197939172626;FOXM1:0.194005413977;TLX1..3_NFIC{dimer}:0.191756300976;GATA6:0.188817935937;EBF1:0.184181083167;T:0.176950701148;NFE2L2:0.121814553072;XCPE1{core}:0.11023377478;JUN:0.102847613623;GLI1..3:0.0976431703861;POU6F1:0.0820717539479;SP1:0.0583579579364;NFKB1_REL_RELA:0.0267835214885;HNF1A:0.0214042147965;SPZ1:0.00532414655899;ARID5B:-0.00102301939401;AR:-0.00340268137597;ETS1,2:-0.0131178339279;NRF1:-0.0239327681473;NFATC1..3:-0.027128484531;ZNF143:-0.0291412775192;NHLH1,2:-0.0319715211618;PAX5:-0.036443383512;YY1:-0.0424697531354;FOXP3:-0.0434990254096;LEF1_TCF7_TCF7L1,2:-0.044371413041;ELF1,2,4:-0.0467342116242;NR1H4:-0.068023041109;HMGA1,2:-0.0722499939654;PRRX1,2:-0.0751538583314;PAX1,9:-0.0755086419809;PAX8:-0.0816202163513;DBP:-0.0819417898283;REST:-0.0852311371514;STAT1,3:-0.0903714964115;FOXO1,3,4:-0.0937516966241;MYBL2:-0.102829001353;GCM1,2:-0.10409053147;RORA:-0.114242927693;PAX2:-0.143837337143;MEF2{A,B,C,D}:-0.144013489745;SRF:-0.146541523798;LHX3,4:-0.160650776844;SOX{8,9,10}:-0.189791286299;ATF6:-0.198465270469;IRF7:-0.209156347039;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.211515683393;TFAP2{A,C}:-0.217612154057;RUNX1..3:-0.220146701571;TFAP4:-0.222347721602;ESRRA:-0.263042677591;POU5F1:-0.275722574351;STAT5{A,B}:-0.303668342303;POU2F1..3:-0.30543890333;MAZ:-0.308886265021;ZBTB6:-0.313739877285;RBPJ:-0.334012872372;HNF4A_NR2F1,2:-0.334738358566;ATF5_CREB3:-0.339845542403;SPI1:-0.34828928185;GFI1:-0.371701422373;TGIF1:-0.374857750304;ALX1:-0.384993775895;SPIB:-0.389085463274;E2F1..5:-0.391786662379;ZIC1..3:-0.403978349174;KLF4:-0.406051206503;ATF2:-0.40881463664;NR3C1:-0.414019511756;SREBF1,2:-0.415167349293;RFX2..5_RFXANK_RFXAP:-0.423665479695;TLX2:-0.44380565885;STAT2,4,6:-0.45420321186;GTF2A1,2:-0.466681442717;PBX1:-0.467372155724;MYFfamily:-0.478170924452;FOXA2:-0.480946858728;PAX6:-0.482606663759;CREB1:-0.490656095922;IKZF1:-0.502311310462;HOXA9_MEIS1:-0.509382274134;EN1,2:-0.548585836808;EVI1:-0.56311799795;GTF2I:-0.564510472918;RFX1:-0.565369126213;NKX2-1,4:-0.575393966515;FOXN1:-0.59631151001;HMX1:-0.619186470856;HOX{A6,A7,B6,B7}:-0.626582746462;NFY{A,B,C}:-0.628286772462;SOX5:-0.646857956624;XBP1:-0.674939109746;TFDP1:-0.675197706029;IRF1,2:-0.677494061063;UFEwm:-0.685794981765;CDX1,2,4:-0.702259211233;ESR1:-0.707034507076;MYB:-0.710465694562;MED-1{core}:-0.79011750325;NR6A1:-0.795681696334;ALX4:-0.798506933985;MTE{core}:-0.803743829198;EP300:-0.806639977047;PRDM1:-0.807146455292;CUX2:-0.826419203838;HIC1:-0.829429512615;PITX1..3:-0.832515419931;TAL1_TCF{3,4,12}:-0.841237898642;TFAP2B:-0.84522997346;FOXD3:-0.845285716799;ZFP161:-0.87049334105;ZNF384:-0.874758344394;ATF4:-0.877909825427;AHR_ARNT_ARNT2:-0.919493046784;ZNF423:-0.940815379852;ZBTB16:-0.987546593202;FOX{D1,D2}:-1.00477711052;DMAP1_NCOR{1,2}_SMARC:-1.05146533115;RREB1:-1.10317558381;MZF1:-1.10605923599;FOXP1:-1.12548445548;NKX6-1,2:-1.1460879417;EGR1..3:-1.15413439123;HBP1_HMGB_SSRP1_UBTF:-1.1987239804;PATZ1:-1.27004074163;RXR{A,B,G}:-1.30659287483;IKZF2:-1.3474818546;PAX3,7:-1.38087234931;BPTF:-1.39341850793;AIRE:-1.41302493445;GATA4:-1.49098055951;NANOG{mouse}:-1.5116924145;NKX3-1:-1.64346586932;BREu{core}:-1.71205767794;RXRA_VDR{dimer}:-1.80559823272;TOPORS:-1.80620379297 | |top_motifs=TP53:2.11589327835;ADNP_IRX_SIX_ZHX:1.78418571308;TBP:1.70690656324;ZEB1:1.50548108127;SNAI1..3:1.32096185134;TBX4,5:1.30318772128;VSX1,2:1.22303851588;NKX2-3_NKX2-5:1.21886514211;NKX2-2,8:1.21320330146;PDX1:1.1159132172;NFIX:1.08832232372;TEF:1.05655898704;MYOD1:1.04283031085;HIF1A:1.02141106363;HAND1,2:0.977528012111;ONECUT1,2:0.890745967366;NFIL3:0.888261320386;PPARG:0.855218685204;NANOG:0.837998009456;TEAD1:0.822132298449;FOS_FOS{B,L1}_JUN{B,D}:0.801365952326;CDC5L:0.783572594058;HSF1,2:0.770827418552;ELK1,4_GABP{A,B1}:0.739959242921;NKX3-2:0.727218485121;NR5A1,2:0.697617260164;BACH2:0.675720324134;TFCP2:0.668529126281;PAX4:0.667761487141;FOSL2:0.590430451627;HES1:0.562005077917;HOX{A5,B5}:0.554781029046;POU3F1..4:0.553073291616;HOX{A4,D4}:0.551685238075;ZNF148:0.534286988288;MTF1:0.511254897144;CRX:0.506088021157;FOXL1:0.475163857113;ZNF238:0.463969702387;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.441620447589;HLF:0.424363182369;bHLH_family:0.408061170791;FOX{I1,J2}:0.402527702385;LMO2:0.39261000977;SOX17:0.389585036852;NFE2:0.384815032611;CEBPA,B_DDIT3:0.324333763234;FOXQ1:0.309153772734;OCT4_SOX2{dimer}:0.308851103633;NFE2L1:0.299339376078;SOX2:0.298336977934;GZF1:0.295269694504;POU1F1:0.293438972984;FOX{F1,F2,J1}:0.232736414361;SMAD1..7,9:0.227074090674;GFI1B:0.198198847214;MAFB:0.197939172626;FOXM1:0.194005413977;TLX1..3_NFIC{dimer}:0.191756300976;GATA6:0.188817935937;EBF1:0.184181083167;T:0.176950701148;NFE2L2:0.121814553072;XCPE1{core}:0.11023377478;JUN:0.102847613623;GLI1..3:0.0976431703861;POU6F1:0.0820717539479;SP1:0.0583579579364;NFKB1_REL_RELA:0.0267835214885;HNF1A:0.0214042147965;SPZ1:0.00532414655899;ARID5B:-0.00102301939401;AR:-0.00340268137597;ETS1,2:-0.0131178339279;NRF1:-0.0239327681473;NFATC1..3:-0.027128484531;ZNF143:-0.0291412775192;NHLH1,2:-0.0319715211618;PAX5:-0.036443383512;YY1:-0.0424697531354;FOXP3:-0.0434990254096;LEF1_TCF7_TCF7L1,2:-0.044371413041;ELF1,2,4:-0.0467342116242;NR1H4:-0.068023041109;HMGA1,2:-0.0722499939654;PRRX1,2:-0.0751538583314;PAX1,9:-0.0755086419809;PAX8:-0.0816202163513;DBP:-0.0819417898283;REST:-0.0852311371514;STAT1,3:-0.0903714964115;FOXO1,3,4:-0.0937516966241;MYBL2:-0.102829001353;GCM1,2:-0.10409053147;RORA:-0.114242927693;PAX2:-0.143837337143;MEF2{A,B,C,D}:-0.144013489745;SRF:-0.146541523798;LHX3,4:-0.160650776844;SOX{8,9,10}:-0.189791286299;ATF6:-0.198465270469;IRF7:-0.209156347039;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.211515683393;TFAP2{A,C}:-0.217612154057;RUNX1..3:-0.220146701571;TFAP4:-0.222347721602;ESRRA:-0.263042677591;POU5F1:-0.275722574351;STAT5{A,B}:-0.303668342303;POU2F1..3:-0.30543890333;MAZ:-0.308886265021;ZBTB6:-0.313739877285;RBPJ:-0.334012872372;HNF4A_NR2F1,2:-0.334738358566;ATF5_CREB3:-0.339845542403;SPI1:-0.34828928185;GFI1:-0.371701422373;TGIF1:-0.374857750304;ALX1:-0.384993775895;SPIB:-0.389085463274;E2F1..5:-0.391786662379;ZIC1..3:-0.403978349174;KLF4:-0.406051206503;ATF2:-0.40881463664;NR3C1:-0.414019511756;SREBF1,2:-0.415167349293;RFX2..5_RFXANK_RFXAP:-0.423665479695;TLX2:-0.44380565885;STAT2,4,6:-0.45420321186;GTF2A1,2:-0.466681442717;PBX1:-0.467372155724;MYFfamily:-0.478170924452;FOXA2:-0.480946858728;PAX6:-0.482606663759;CREB1:-0.490656095922;IKZF1:-0.502311310462;HOXA9_MEIS1:-0.509382274134;EN1,2:-0.548585836808;EVI1:-0.56311799795;GTF2I:-0.564510472918;RFX1:-0.565369126213;NKX2-1,4:-0.575393966515;FOXN1:-0.59631151001;HMX1:-0.619186470856;HOX{A6,A7,B6,B7}:-0.626582746462;NFY{A,B,C}:-0.628286772462;SOX5:-0.646857956624;XBP1:-0.674939109746;TFDP1:-0.675197706029;IRF1,2:-0.677494061063;UFEwm:-0.685794981765;CDX1,2,4:-0.702259211233;ESR1:-0.707034507076;MYB:-0.710465694562;MED-1{core}:-0.79011750325;NR6A1:-0.795681696334;ALX4:-0.798506933985;MTE{core}:-0.803743829198;EP300:-0.806639977047;PRDM1:-0.807146455292;CUX2:-0.826419203838;HIC1:-0.829429512615;PITX1..3:-0.832515419931;TAL1_TCF{3,4,12}:-0.841237898642;TFAP2B:-0.84522997346;FOXD3:-0.845285716799;ZFP161:-0.87049334105;ZNF384:-0.874758344394;ATF4:-0.877909825427;AHR_ARNT_ARNT2:-0.919493046784;ZNF423:-0.940815379852;ZBTB16:-0.987546593202;FOX{D1,D2}:-1.00477711052;DMAP1_NCOR{1,2}_SMARC:-1.05146533115;RREB1:-1.10317558381;MZF1:-1.10605923599;FOXP1:-1.12548445548;NKX6-1,2:-1.1460879417;EGR1..3:-1.15413439123;HBP1_HMGB_SSRP1_UBTF:-1.1987239804;PATZ1:-1.27004074163;RXR{A,B,G}:-1.30659287483;IKZF2:-1.3474818546;PAX3,7:-1.38087234931;BPTF:-1.39341850793;AIRE:-1.41302493445;GATA4:-1.49098055951;NANOG{mouse}:-1.5116924145;NKX3-1:-1.64346586932;BREu{core}:-1.71205767794;RXRA_VDR{dimer}:-1.80559823272;TOPORS:-1.80620379297 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12142-128E9;search_select_hide=table117:FF:12142-128E9 | |||
}} | }} |
Latest revision as of 18:32, 4 June 2020
Name: | Mallassez-derived cells, donor1 (MZH3) |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12538 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12538
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12538
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.328 |
10 | 10 | 0.969 |
100 | 100 | 0.743 |
101 | 101 | 0.609 |
102 | 102 | 0.732 |
103 | 103 | 0.157 |
104 | 104 | 0.765 |
105 | 105 | 0.0706 |
106 | 106 | 0.253 |
107 | 107 | 0.312 |
108 | 108 | 0.819 |
109 | 109 | 0.00455 |
11 | 11 | 0.121 |
110 | 110 | 0.186 |
111 | 111 | 0.458 |
112 | 112 | 0.145 |
113 | 113 | 0.695 |
114 | 114 | 0.192 |
115 | 115 | 0.065 |
116 | 116 | 0.993 |
117 | 117 | 0.379 |
118 | 118 | 0.593 |
119 | 119 | 0.36 |
12 | 12 | 0.888 |
120 | 120 | 0.115 |
121 | 121 | 0.885 |
122 | 122 | 0.136 |
123 | 123 | 0.205 |
124 | 124 | 0.511 |
125 | 125 | 0.415 |
126 | 126 | 0.258 |
127 | 127 | 0.0362 |
128 | 128 | 0.861 |
129 | 129 | 0.0611 |
13 | 13 | 0.0265 |
130 | 130 | 0.527 |
131 | 131 | 0.279 |
132 | 132 | 0.836 |
133 | 133 | 0.0166 |
134 | 134 | 0.97 |
135 | 135 | 0.549 |
136 | 136 | 0.292 |
137 | 137 | 0.624 |
138 | 138 | 0.48 |
139 | 139 | 0.702 |
14 | 14 | 0.682 |
140 | 140 | 0.355 |
141 | 141 | 0.722 |
142 | 142 | 0.477 |
143 | 143 | 0.0764 |
144 | 144 | 0.751 |
145 | 145 | 0.288 |
146 | 146 | 0.0116 |
147 | 147 | 0.488 |
148 | 148 | 0.228 |
149 | 149 | 0.843 |
15 | 15 | 0.206 |
150 | 150 | 0.552 |
151 | 151 | 0.304 |
152 | 152 | 0.0267 |
153 | 153 | 0.16 |
154 | 154 | 0.686 |
155 | 155 | 0.381 |
156 | 156 | 0.817 |
157 | 157 | 0.751 |
158 | 158 | 0.769 |
159 | 159 | 0.4 |
16 | 16 | 0.145 |
160 | 160 | 0.341 |
161 | 161 | 0.5 |
162 | 162 | 0.579 |
163 | 163 | 0.938 |
164 | 164 | 0.953 |
165 | 165 | 0.496 |
166 | 166 | 0.995 |
167 | 167 | 0.683 |
168 | 168 | 0.215 |
169 | 169 | 0.0548 |
17 | 17 | 0.181 |
18 | 18 | 0.124 |
19 | 19 | 0.862 |
2 | 2 | 0.227 |
20 | 20 | 0.956 |
21 | 21 | 0.872 |
22 | 22 | 0.427 |
23 | 23 | 0.159 |
24 | 24 | 0.0189 |
25 | 25 | 0.363 |
26 | 26 | 0.819 |
27 | 27 | 0.194 |
28 | 28 | 0.425 |
29 | 29 | 0.388 |
3 | 3 | 0.26 |
30 | 30 | 0.194 |
31 | 31 | 0.583 |
32 | 32 | 0.509 |
33 | 33 | 0.127 |
34 | 34 | 0.825 |
35 | 35 | 0.386 |
36 | 36 | 0.323 |
37 | 37 | 0.0575 |
38 | 38 | 0.312 |
39 | 39 | 0.548 |
4 | 4 | 0.564 |
40 | 40 | 0.0106 |
41 | 41 | 0.933 |
42 | 42 | 0.277 |
43 | 43 | 0.308 |
44 | 44 | 0.566 |
45 | 45 | 0.0515 |
46 | 46 | 0.439 |
47 | 47 | 0.0992 |
48 | 48 | 0.129 |
49 | 49 | 0.592 |
5 | 5 | 0.499 |
50 | 50 | 0.603 |
51 | 51 | 0.812 |
52 | 52 | 0.332 |
53 | 53 | 0.768 |
54 | 54 | 0.355 |
55 | 55 | 0.285 |
56 | 56 | 0.312 |
57 | 57 | 0.215 |
58 | 58 | 0.377 |
59 | 59 | 0.318 |
6 | 6 | 0.632 |
60 | 60 | 0.13 |
61 | 61 | 0.726 |
62 | 62 | 0.371 |
63 | 63 | 0.181 |
64 | 64 | 0.271 |
65 | 65 | 0.423 |
66 | 66 | 0.166 |
67 | 67 | 0.58 |
68 | 68 | 0.0433 |
69 | 69 | 0.891 |
7 | 7 | 0.077 |
70 | 70 | 0.0177 |
71 | 71 | 0.17 |
72 | 72 | 0.323 |
73 | 73 | 0.00591 |
74 | 74 | 0.532 |
75 | 75 | 0.2 |
76 | 76 | 0.709 |
77 | 77 | 0.0262 |
78 | 78 | 0.0328 |
79 | 79 | 0.109 |
8 | 8 | 0.207 |
80 | 80 | 0.465 |
81 | 81 | 0.938 |
82 | 82 | 0.613 |
83 | 83 | 0.173 |
84 | 84 | 0.413 |
85 | 85 | 0.173 |
86 | 86 | 0.955 |
87 | 87 | 0.0264 |
88 | 88 | 0.723 |
89 | 89 | 0.00702 |
9 | 9 | 0.664 |
90 | 90 | 0.647 |
91 | 91 | 0.89 |
92 | 92 | 0.502 |
93 | 93 | 0.064 |
94 | 94 | 0.42 |
95 | 95 | 0.00257 |
96 | 96 | 0.4 |
97 | 97 | 0.457 |
98 | 98 | 0.251 |
99 | 99 | 0.151 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12538
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000087 human Malassez derived epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)
UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)