FF:12186-129A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=RNA-Seq@SAMD00013687 | |DRA_sample_Accession=RNA-Seq@SAMD00013687 | ||
|accession_numbers=CAGE;DRX008064;DRR008936;DRZ000361;DRZ001746!RNA-Seq;DRX012347;DRR013795;DRZ002996; | |accession_numbers=CAGE;DRX008064;DRR008936;DRZ000361;DRZ001746;DRZ011711;DRZ013096!RNA-Seq;DRX012347;DRR013795;DRZ002996; | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.06!114.68!TCF7;;chr3:27763807..27763822,-!p1@EOMES!1.84!67.85!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!1.81!63.08!ATXN7;;chr2:192015701..192015743,-!p1@STAT4!1.79!81.23!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.78!59.57!IKZF1;;chr2:68592406..68592424,+!p1@PLEK!1.77!57.34!PLEK;;chr4:109087445..109087463,-!p1@LEF1!1.70!49.38!LEF1;;chr17:45810594..45810608,+!p1@TBX21!1.69!47.78!TBX21;;chr9:117150254..117150271,-!p1@AKNA!1.66!117.87!AKNA;;chr5:133450365..133450444,+!p1@TCF7!1.65!190.82!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.62!74.23!RUNX3;;chr17:37934365..37934387,-!p2@IKZF3!1.59!37.91!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.59!37.91!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.58!49.06!STAT4;;chr19:16435625..16435682,+!p1@KLF2!1.50!933.72!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.48!29.31!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.47!77.73!ZNF101;;chr14:75988771..75988826,+!p1@BATF!1.45!35.68!BATF;;chr4:109090075..109090095,-!p2@LEF1!1.43!25.80!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!1.42!36.64!NFATC2;;chr2:68592394..68592405,+!p2@PLEK!1.41!24.53!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.40!23.89!IKZF1;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.34!IKZF1;;chr11:128392273..128392308,-!p2@ETS1!1.30!78.05!ETS1;;chr3:71355163..71355209,-!p5@FOXP1!1.30!26.44!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.89!SATB1;;chr20:56195474..56195506,-!p1@ZBP1!1.30!18.80!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.52!FOXP1;;chr15:60884706..60884743,-!p1@RORA!1.26!87.29!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.03!PRDM1;;chr6:391743..391759,+!p1@IRF4!1.24!16.57!IRF4;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.41!BACH2;;chr17:37934204..37934241,-!p3@IKZF3!1.21!15.29!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.21!15.29!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!1.20!94.30!ELF1;;chr11:128392085..128392232,-!p1@ETS1!1.19!474.66!ETS1;;chr17:38020557..38020572,-!p4@IKZF3!1.19!14.65!IKZF3;;chr17:38020392..38020477,-!p1@IKZF3!1.19!14.34!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.18!14.02!SP140;;chr17:38020516..38020544,-!p5@IKZF3!1.16!13.38!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.14!153.87!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.14!27.40!ZBTB25;;chr8:67525443..67525459,-!p2@MYBL1!1.13!18.48!MYBL1;;chr4:109089901..109089930,-!p3@LEF1!1.12!12.11!LEF1;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr16:88752889..88752921,-!p1@SNAI3!1.10!13.70!SNAI3;;chr14:75988831..75988847,+!p2@BATF!1.08!11.15!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.07!38.86!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!1.07!12.74!GATA3;;chr13:74707894..74707947,-!p6@KLF12!1.07!12.11!KLF12;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.83!BCL11B;;chr17:37934280..37934299,-!p6@IKZF3!1.07!10.83!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.06!23.57!ZNF263;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.51!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.05!11.79!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.05!10.19!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.04!9.88!LEF1;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.88!GFI1;;chr17:38020481..38020506,-!p7@IKZF3!1.01!9.24!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.24!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!245.30!TSC22D3;;chr4:109088940..109089037,-!p4@LEF1!1.00!8.92!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.00!8.92!HOPX;;chr7:50348268..50348366,+!p4@IKZF1!1.00!8.92!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.99!29.31!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.97!21.34!NFE2L2;;chr3:18487057..18487105,-!p4@SATB1!0.97!8.28!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.28!FOXP1;;chr8:60031619..60031676,-!p1@TOX!0.96!18.16!TOX;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.42!ZNF540;;chr3:71179699..71179744,-!p2@FOXP1!0.95!61.16!FOXP1;;chr19:20748574..20748599,-!p1@ZNF737!0.94!47.47!ZNF737;;chr16:89787937..89787971,+!p1@ZNF276!0.93!20.07!ZNF276;;chr4:185395633..185395651,-!p2@IRF2!0.93!12.42!IRF2;;chr4:109088130..109088163,-!p13@LEF1!0.92!7.33!LEF1;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.60!GATA3;;chr4:109089996..109090012,-!p5@LEF1!0.90!7.01!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.90!7.01!HOPX;;chr9:3525727..3525828,-!p2@RFX3!0.89!18.16!RFX3;;chr19:19729477..19729542,-!p1@PBX4!0.89!14.97!PBX4;;chr14:69262947..69262986,-!p3@ZFP36L1!0.89!8.28!ZFP36L1;;chr3:18480217..18480239,-!p3@SATB1!0.89!6.69!SATB1;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.60!AKNA;;chr6:106546731..106546755,+!p5@PRDM1!0.87!6.37!PRDM1;;chr19:9546177..9546224,-!p1@ZNF266!0.86!47.15!ZNF266;;chr17:36861675..36861697,+!p3@MLLT6!0.85!14.97!MLLT6;;chr14:99737850..99737852,-!p3@BCL11B!0.85!6.05!BCL11B;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.05!CREB3L2;;chr16:79634624..79634642,-!p1@MAF!0.84!24.85!MAF;;chr20:44600199..44600219,-!p3@ZNF335!0.84!8.28!ZNF335;;chr19:19779686..19779697,+!p3@ZNF101!0.84!7.01!ZNF101;;chr16:89789248..89789270,+!p8@ZNF276!0.83!5.73!ZNF276;;chr4:109086281..109086319,-!p9@LEF1!0.83!5.73!LEF1;;chr4:10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F2;;chr19:58144529..58144579,+!p1@ZNF211!0.62!20.07!ZNF211;;chr19:23941680..23941704,-!p1@ZNF681!0.62!10.51!ZNF681;;chr13:74708372..74708409,-!p4@KLF12!0.62!8.28!KLF12;;chr1:44679370..44679422,+!p3@DMAP1!0.62!4.46!DMAP1;;chr1:158978768..158978800,+!p8@IFI16!0.62!3.19!IFI16;;chr1:26697189..26697205,-!p2@ZNF683!0.62!3.19!ZNF683;;chr4:149363475..149363492,-!p2@NR3C2!0.62!3.19!NR3C2;;chrX:134429952..134429971,-!p3@ZNF75D!0.62!3.19!ZNF75D;;chr19:21203451..21203475,+!p1@ZNF430!0.61!37.27!ZNF430;;chr19:22018966..22019001,-!p1@ZNF43!0.61!21.03!ZNF43;;chr19:21512202..21512225,-!p1@ZNF708!0.61!18.80!ZNF708;;chr2:208394817..208394834,+!p3@CREB1!0.61!14.34!CREB1;;chr6:35227282..35227330,+!p2@ZNF76!0.61!13.38!ZNF76;;chr9:3525867..3525902,-!p3@RFX3!0.61!12.42!RFX3;;chr9:20622444..20622468,-!p2@MLLT3!0.61!11.47!MLLT3;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.96!MYBL1;;chr19:35225078..35225120,+!p2@ZNF181!0.61!7.96!ZNF181;;chrX:131623982..131624011,-!p6@MBNL3!0.61!4.78!MBNL3;;chrX:131624056..131624069,-!p2@MBNL3!0.61!4.46!MBNL3;;chr1:158979686..158979745,+!p1@IFI16!0.60!118.82!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!0.60!48.42!ZEB2;;chr7:99097863..99097936,-!p1@ZNF394!0.60!36.32!ZNF394;;chr17:40440481..40440550,+!p1@STAT5A!0.60!25.49!STAT5A;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.21!FOXO1;;chr10:104154246..104154347,+!p3@NFKB2!0.60!21.66!NFKB2;;chr3:114819124..114819200,-!p3@ZBTB20!0.60!7.96!ZBTB20;;chr6:157098579..157098634,+!p4@ARID1B!0.60!7.65!ARID1B;;chr19:37064145..37064216,-!p1@ZNF529!0.59!29.63!ZNF529;;chr9:88969339..88969422,-!p2@ZCCHC6!0.59!27.40!ZCCHC6;;chr8:42698194..42698239,-!p2@THAP1!0.59!15.29!THAP1;;chr6:126102292..126102329,+!p3@NCOA7!0.59!11.15!NCOA7;;chr14:69262789..69262822,-!p2@ZFP36L1!0.59!8.60!ZFP36L1;;chr6:15249128..15249177,+!p4@JARID2!0.59!5.73!JARID2;;chr8:71316428..71316459,-!p2@NCOA2!0.59!5.42!NCOA2;;chrX:131623932..131623964,-!p7@MBNL3!0.59!4.46!MBNL3;;chr7:150102756..150102772,+!p5@ZNF775!0.59!2.87!ZNF775;;chr7:63505799..63505904,+!p1@ZNF727!0.59!2.87!ZNF727;;chr17:45810816..45810838,+!p2@TBX21!0.59!2.87!TBX21;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.87!HOXB2;;chr2:100759010..100759035,-!p1@AFF3!0.59!2.87!AFF3;;chr3:71353892..71353928,-!p31@FOXP1!0.59!2.87!FOXP1;;chr4:109087906..109087928,-!p12@LEF1!0.59!2.87!LEF1;;chr12:54778471..54778528,-!p1@ZNF385A!0.59!2.87!ZNF385A;;chr19:38183138..38183157,-!p2@ZNF781!0.59!2.87!ZNF781;;chr14:64970494..64970578,-!p1@ZBTB25!0.58!34.72!ZBTB25;;chr7:64838754..64838778,+!p1@ZNF92!0.58!33.13!ZNF92;;chr6:109804412..109804458,-!p1@ZBTB24!0.58!29.95!ZBTB24;;chr1:249132410..249132456,+!p1@ZNF672!0.58!25.80!ZNF672;;chr19:21579908..21579949,+!p1@ZNF493!0.58!20.39!ZNF493;;chr8:67525524..67525543,-!p3@MYBL1!0.58!5.10!MYBL1;;chr19:49139477..49139552,-!p4@DBP!0.58!3.82!DBP;;chr17:42295777..42295816,-!p7@UBTF!0.58!3.50!UBTF;;chr7:86781734..86781777,+!p1@DMTF1!0.57!61.80!DMTF1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.57!21.98!ZNF580;;chr19:38270215..38270251,-!p1@ZNF573!0.57!13.38!ZNF573;;chr19:58694742..58694800,+!p2@ZNF274!0.57!13.38!ZNF274;;chr19:12405645..12405685,-!p1@ZNF44!0.57!11.47!ZNF44;;chr12:133707021..133707071,-!p2@ZNF891!0.57!5.10!ZNF891;;chr1:67395855..67395872,+!p5@MIER1!0.57!4.46!MIER1;;chr19:37464063..37464127,+!p2@ZNF568!0.57!3.82!ZNF568;;chr2:231191875..231191918,+!p1@SP140L!0.56!31.54!SP140L;;chr9:73028332..73028385,-!p3@KLF9!0.56!10.83!KLF9;;chr17:38256973..38256990,-!p5@NR1D1!0.56!7.01!NR1D1;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.46!UBP1;;chr19:58239007..58239016,-!p2@ZNF671!0.56!3.50!ZNF671;;chr10:44144292..44144338,-!p1@ZNF32!0.55!20.39!ZNF32;;chr3:23986824..23986848,+!p2@NR1D2!0.55!17.52!NR1D2;;chr4:87928142..87928165,+!p5@AFF1!0.55!10.51!AFF1;;chr16:29817433..29817468,+!p8@MAZ!0.55!9.56!MAZ;;chr9:97021572..97021615,+!p1@ZNF169!0.55!7.65!ZNF169;;chr9:20621927..20621996,-!p3@MLLT3!0.55!4.78!MLLT3;;chr6:45390269..45390298,+!p5@RUNX2!0.55!4.78!RUNX2;;chr5:142814241..142814278,-!p12@NR3C1!0.55!2.55!NR3C1;;chr7:50343800..50343811,+!p8@IKZF1!0.55!2.55!IKZF1;;chr7:92076686..92076700,+!p3@GATAD1!0.55!2.55!GATAD1;;chr3:27764190..27764208,-!p2@EOMES!0.55!2.55!EOMES;;chr4:109089290..109089320,-!p14@LEF1!0.55!2.55!LEF1;;chr10:35416223..35416234,+!p12@CREM!0.55!2.55!CREM;;chr13:41593493..41593506,-!p8@ELF1!0.55!2.55!ELF1;;chr9:32551047..32551066,-!p5@TOPORS!0.55!2.55!TOPORS;;chr19:22193731..22193751,-!p1@ZNF208!0.55!2.55!ZNF208;;chr15:31619326..31619390,+!p2@KLF13!0.54!35.68!KLF13;;chr7:64126503..64126528,+!p1@ZNF107!0.54!21.66!ZNF107;;chr20:25677465..25677497,-!p1@ZNF337!0.54!19.11!ZNF337;;chr2:95831389..95831432,-!p1@ZNF514!0.54!13.06!ZNF514;;chr19:37709076..37709154,+!p1@ZNF383!0.54!9.88!ZNF383;;chr2:97202451..97202462,+!p2@ARID5A!0.54!6.37!ARID5A;;chr8:125985531..125985571,+!p1@ZNF572!0.54!5.73!ZNF572;;chr6:42419649..42419673,-!p3@TRERF1!0.54!4.78!TRERF1;;chr19:49140595..49140607,-!p3@DBP!0.54!3.82!DBP;;chr2:174828545..174828644,-!p1@SP3!0.53!47.15!SP3;;chr4:331578..331615,+!p1@ZNF141!0.53!32.81!ZNF141;;chr2:208031542..208031595,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0!ZNF565;;chr4:56412978..56413003,-!p1@CLOCK!0.26!3.19!CLOCK;;chr19:58951496..58951539,-!p1@ZNF132!0.26!3.19!ZNF132;;chr13:27998854..27998866,+!p3@GTF3A!0.26!2.55!GTF3A;;chr1:23857698..23857733,-!p1@E2F2!0.26!2.23!E2F2;;chr19:12444458..12444486,-!p2@ZNF563!0.26!1.59!ZNF563;;chr2:208030705..208030718,-!p7@KLF7!0.26!1.59!KLF7;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.26!1.59!ZKSCAN4;;chr6:42419290..42419314,-!p5@TRERF1!0.26!1.27!TRERF1;;chr19:38183208..38183225,-!p1@ZNF781!0.26!1.27!ZNF781;;chr22:29196511..29196541,-!p1@XBP1!0.25!180.63!XBP1;;chr20:34359925..34359991,+!p1@PHF20!0.25!70.72!PHF20;;chr16:67596417..67596497,+!p1@CTCF!0.25!55.11!CTCF;;chr21:34144024..34144111,-!p1@GCFC1!0.25!32.81!GCFC1;;chr19:20844368..20844407,-!p1@ZNF626!0.25!21.98!ZNF626;;chr7:6746529..6746591,-!p1@ZNF12!0.25!21.66!ZNF12;;chr1:151319710..151319774,-!p1@RFX5!0.25!15.29!RFX5;;chr16:68119250..68119293,+!p2@NFATC3!0.25!11.79!NFATC3;;chr18:72265084..72265143,+!p1@ZNF407!0.25!11.47!ZNF407;;chr12:96588219..96588263,+!p2@ELK3!0.25!10.83!ELK3;;chr14:74226961..74227020,-!p1@C14orf43!0.25!9.88!C14orf43;;chr14:74253865..74253917,-!p2@C14orf43!0.25!9.56!C14orf43;;chr11:62368696..62368759,-!p4@MTA2!0.25!9.24!MTA2;;chr9:95640300..95640345,-!p1@ZNF484!0.25!8.28!ZNF484;;chr19:58258202..58258226,+!p3@ZNF776!0.25!7.01!ZNF776;;chr17:7382856..7382889,-!p3@ZBTB4!0.25!5.73!ZBTB4;;chr19:37407212..37407280,+!p1@ZNF568!0.25!5.73!ZNF568;;chr19:58111241..58111292,+!p1@ZNF530!0.25!4.78!ZNF530;;chr19:44809143..44809187,-!p1@ZNF235!0.25!4.14!ZNF235;;chr6:41040923..41040952,+!p2@NFYA!0.25!3.50!NFYA;;chr7:99156393..99156433,+!p6@ZNF655!0.25!2.87!ZNF655;;chr5:178157700..178157734,-!p3@ZNF354A!0.25!2.55!ZNF354A;;chr1:42501569..42501614,-!p1@HIVEP3!0.25!2.55!HIVEP3;;chr1:205592857..205592880,-!p6@ELK4!0.25!1.91!ELK4;;chr19:11877805..11877832,+!p2@ZNF441!0.25!1.91!ZNF441;;chr19:12662314..12662328,-!p2@ZNF564!0.25!1.91!ZNF564;;chr3:114866124..114866149,-!p5@ZBTB20!0.25!1.91!ZBTB20;;chr19:53496806..53496848,-!p2@ZNF702P!0.25!1.59!ZNF702P;;chr8:145980968..145980996,-!p2@ZNF251!0.25!1.59!ZNF251;;chr11:695731..695765,-!p5@DEAF1!0.25!1.27!DEAF1;;chr19:20011731..20011743,+!p3@ZNF93!0.25!1.27!ZNF93;;chr19:37407411..37407451,+!p3@ZNF568!0.25!1.27!ZNF568;;chr15:77197781..77197801,-!p3@SCAPER!0.25!0.96!SCAPER;;chr16:88519743..88519754,+!p2@ZFPM1!0.25!0.96!ZFPM1;;chr8:128750143..128750160,+!p19@MYC!0.25!0.96!MYC;;chrX:118739835..118739862,-!p1@NKRF!0.25!0.96!NKRF;;chr10:63808979..63808990,+!p8@ARID5B!0.25!0.96!ARID5B;;chr10:60145155..60145206,+!p1@TFAM!0.24!68.81!TFAM;;chr1:40627038..40627071,+!p1@RLF!0.24!20.07!RLF;;chr19:9731872..9731915,-!p1@ZNF561!0.24!19.75!ZNF561;;chr1:41157421..41157482,+!p2@NFYC!0.24!17.52!NFYC;;chr16:2273558..2273637,+!p1@E4F1!0.24!14.65!E4F1;;chr12:133657477..133657529,+!p1@ZNF140!0.24!11.47!ZNF140;;chr12:133614062..133614117,+!p1@ZNF84!0.24!9.56!ZNF84;;chr19:14800849..14800917,+!p1@ZNF333!0.24!9.56!ZNF333;;chr19:24269981..24270007,+!p2@ZNF254!0.24!9.56!ZNF254;;chr7:99156434..99156510,+!p2@ZNF655!0.24!8.92!ZNF655;;chr7:99102865..99102894,+!p1@ZKSCAN5!0.24!7.01!ZKSCAN5;;chr9:117160738..117160782,-!p2@AKNA!0.24!5.73!AKNA;;chr1:205601000..205601055,-!p2@ELK4!0.24!5.73!ELK4;;chr6:134274295..134274308,+!p2@TBPL1!0.24!4.46!TBPL1;;chr19:24097675..24097699,+!p1@ZNF726!0.24!4.46!ZNF726;;chr3:5020939..5020952,+!p2@BHLHE40!0.24!4.14!BHLHE40;;chr20:46130602..46130613,+!p3@NCOA3!0.24!3.82!NCOA3;;chr3:48282536..48282586,+!p2@ZNF589!0.24!3.50!ZNF589;;chr1:211432823..211432851,+!p3@RCOR3!0.24!3.19!RCOR3;;chr6:106534230..106534254,+!p2@PRDM1!0.24!3.19!PRDM1;;chr2:113033141..113033162,+!p2@ZC3H6!0.24!2.55!ZC3H6;;chr11:47270436..47270464,+!p2@NR1H3!0.24!2.55!NR1H3;;chr1:249153114..249153175,-!p3@ZNF692!0.24!2.23!ZNF692;;chr15:67358146..67358157,+!p7@SMAD3!0.24!1.91!SMAD3;;chr10:35415735..35415756,+!p9@CREM!0.24!1.59!CREM;;chr14:35873101..35873119,-!p6@NFKBIA!0.24!1.27!NFKBIA;;chr19:13213704..13213726,-!p3@LYL1!0.24!1.27!LYL1;; | |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.06!114.68!TCF7;;chr3:27763807..27763822,-!p1@EOMES!1.84!67.85!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!1.81!63.08!ATXN7;;chr2:192015701..192015743,-!p1@STAT4!1.79!81.23!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.78!59.57!IKZF1;;chr2:68592406..68592424,+!p1@PLEK!1.77!57.34!PLEK;;chr4:109087445..109087463,-!p1@LEF1!1.70!49.38!LEF1;;chr17:45810594..45810608,+!p1@TBX21!1.69!47.78!TBX21;;chr9:117150254..117150271,-!p1@AKNA!1.66!117.87!AKNA;;chr5:133450365..133450444,+!p1@TCF7!1.65!190.82!TCF7;;chr1:25256756..25256774,-!p1@RUNX3!1.62!74.23!RUNX3;;chr17:37934365..37934387,-!p2@IKZF3!1.59!37.91!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.59!37.91!SP140;;chr2:192015750..192015793,-!p2@STAT4!1.58!49.06!STAT4;;chr19:16435625..16435682,+!p1@KLF2!1.50!933.72!KLF2;;chr5:133451347..133451358,+!p3@TCF7!1.48!29.31!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.47!77.73!ZNF101;;chr14:75988771..75988826,+!p1@BATF!1.45!35.68!BATF;;chr4:109090075..109090095,-!p2@LEF1!1.43!25.80!LEF1;;chr20:50159198..50159299,-!p1@NFATC2!1.42!36.64!NFATC2;;chr2:68592394..68592405,+!p2@PLEK!1.41!24.53!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.40!23.89!IKZF1;;chr7:50343895..50343936,+!p5@IKZF1!1.35!21.34!IKZF1;;chr11:128392273..128392308,-!p2@ETS1!1.30!78.05!ETS1;;chr3:71355163..71355209,-!p5@FOXP1!1.30!26.44!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.89!SATB1;;chr20:56195474..56195506,-!p1@ZBP1!1.30!18.80!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.27!17.52!FOXP1;;chr15:60884706..60884743,-!p1@RORA!1.26!87.29!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.03!PRDM1;;chr6:391743..391759,+!p1@IRF4!1.24!16.57!IRF4;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.41!BACH2;;chr17:37934204..37934241,-!p3@IKZF3!1.21!15.29!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.21!15.29!ARID5A;;chr13:41593425..41593480,-!p1@ELF1!1.20!94.30!ELF1;;chr11:128392085..128392232,-!p1@ETS1!1.19!474.66!ETS1;;chr17:38020557..38020572,-!p4@IKZF3!1.19!14.65!IKZF3;;chr17:38020392..38020477,-!p1@IKZF3!1.19!14.34!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.18!14.02!SP140;;chr17:38020516..38020544,-!p5@IKZF3!1.16!13.38!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.14!153.87!FLI1;;chr14:64970670..64970712,-!p3@ZBTB25!1.14!27.40!ZBTB25;;chr8:67525443..67525459,-!p2@MYBL1!1.13!18.48!MYBL1;;chr4:109089901..109089930,-!p3@LEF1!1.12!12.11!LEF1;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr16:88752889..88752921,-!p1@SNAI3!1.10!13.70!SNAI3;;chr14:75988831..75988847,+!p2@BATF!1.08!11.15!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.07!38.86!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!1.07!12.74!GATA3;;chr13:74707894..74707947,-!p6@KLF12!1.07!12.11!KLF12;;chr14:99738138..99738163,-!p1@BCL11B!1.07!10.83!BCL11B;;chr17:37934280..37934299,-!p6@IKZF3!1.07!10.83!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.06!23.57!ZNF263;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.51!ZBP1;;chr4:57522166..57522260,-!p2@HOPX!1.05!11.79!HOPX;;chr3:71542684..71542720,-!p18@FOXP1!1.05!10.19!FOXP1;;chr4:109089573..109089585,-!p8@LEF1!1.04!9.88!LEF1;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.88!GFI1;;chr17:38020481..38020506,-!p7@IKZF3!1.01!9.24!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.24!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.00!245.30!TSC22D3;;chr4:109088940..109089037,-!p4@LEF1!1.00!8.92!LEF1;;chr4:57522598..57522664,-!p3@HOPX!1.00!8.92!HOPX;;chr7:50348268..50348366,+!p4@IKZF1!1.00!8.92!IKZF1;;chrX:101186981..101187030,-!p1@ZMAT1!0.99!29.31!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.97!21.34!NFE2L2;;chr3:18487057..18487105,-!p4@SATB1!0.97!8.28!SATB1;;chr3:71542651..71542683,-!p22@FOXP1!0.97!8.28!FOXP1;;chr8:60031619..60031676,-!p1@TOX!0.96!18.16!TOX;;chr19:38085768..38085821,+!p1@ZNF540!0.96!12.42!ZNF540;;chr3:71179699..71179744,-!p2@FOXP1!0.95!61.16!FOXP1;;chr19:20748574..20748599,-!p1@ZNF737!0.94!47.47!ZNF737;;chr16:89787937..89787971,+!p1@ZNF276!0.93!20.07!ZNF276;;chr4:185395633..185395651,-!p2@IRF2!0.93!12.42!IRF2;;chr4:109088130..109088163,-!p13@LEF1!0.92!7.33!LEF1;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.60!GATA3;;chr4:109089996..109090012,-!p5@LEF1!0.90!7.01!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.90!7.01!HOPX;;chr9:3525727..3525828,-!p2@RFX3!0.89!18.16!RFX3;;chr19:19729477..19729542,-!p1@PBX4!0.89!14.97!PBX4;;chr14:69262947..69262986,-!p3@ZFP36L1!0.89!8.28!ZFP36L1;;chr3:18480217..18480239,-!p3@SATB1!0.89!6.69!SATB1;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.60!AKNA;;chr6:106546731..106546755,+!p5@PRDM1!0.87!6.37!PRDM1;;chr19:9546177..9546224,-!p1@ZNF266!0.86!47.15!ZNF266;;chr17:36861675..36861697,+!p3@MLLT6!0.85!14.97!MLLT6;;chr14:99737850..99737852,-!p3@BCL11B!0.85!6.05!BCL11B;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.05!CREB3L2;;chr16:79634624..79634642,-!p1@MAF!0.84!24.85!MAF;;chr20:44600199..44600219,-!p3@ZNF335!0.84!8.28!ZNF335;;chr19:19779686..19779697,+!p3@ZNF101!0.84!7.01!ZNF101;;chr16:89789248..89789270,+!p8@ZNF276!0.83!5.73!ZNF276;;chr4:109086281..109086319,-!p9@LEF1!0.83!5.73!LEF1;;chr4:10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F2;;chr19:58144529..58144579,+!p1@ZNF211!0.62!20.07!ZNF211;;chr19:23941680..23941704,-!p1@ZNF681!0.62!10.51!ZNF681;;chr13:74708372..74708409,-!p4@KLF12!0.62!8.28!KLF12;;chr1:44679370..44679422,+!p3@DMAP1!0.62!4.46!DMAP1;;chr1:158978768..158978800,+!p8@IFI16!0.62!3.19!IFI16;;chr1:26697189..26697205,-!p2@ZNF683!0.62!3.19!ZNF683;;chr4:149363475..149363492,-!p2@NR3C2!0.62!3.19!NR3C2;;chrX:134429952..134429971,-!p3@ZNF75D!0.62!3.19!ZNF75D;;chr19:21203451..21203475,+!p1@ZNF430!0.61!37.27!ZNF430;;chr19:22018966..22019001,-!p1@ZNF43!0.61!21.03!ZNF43;;chr19:21512202..21512225,-!p1@ZNF708!0.61!18.80!ZNF708;;chr2:208394817..208394834,+!p3@CREB1!0.61!14.34!CREB1;;chr6:35227282..35227330,+!p2@ZNF76!0.61!13.38!ZNF76;;chr9:3525867..3525902,-!p3@RFX3!0.61!12.42!RFX3;;chr9:20622444..20622468,-!p2@MLLT3!0.61!11.47!MLLT3;;chr8:67525473..67525518,-!p1@MYBL1!0.61!7.96!MYBL1;;chr19:35225078..35225120,+!p2@ZNF181!0.61!7.96!ZNF181;;chrX:131623982..131624011,-!p6@MBNL3!0.61!4.78!MBNL3;;chrX:131624056..131624069,-!p2@MBNL3!0.61!4.46!MBNL3;;chr1:158979686..158979745,+!p1@IFI16!0.60!118.82!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!0.60!48.42!ZEB2;;chr7:99097863..99097936,-!p1@ZNF394!0.60!36.32!ZNF394;;chr17:40440481..40440550,+!p1@STAT5A!0.60!25.49!STAT5A;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.21!FOXO1;;chr10:104154246..104154347,+!p3@NFKB2!0.60!21.66!NFKB2;;chr3:114819124..114819200,-!p3@ZBTB20!0.60!7.96!ZBTB20;;chr6:157098579..157098634,+!p4@ARID1B!0.60!7.65!ARID1B;;chr19:37064145..37064216,-!p1@ZNF529!0.59!29.63!ZNF529;;chr9:88969339..88969422,-!p2@ZCCHC6!0.59!27.40!ZCCHC6;;chr8:42698194..42698239,-!p2@THAP1!0.59!15.29!THAP1;;chr6:126102292..126102329,+!p3@NCOA7!0.59!11.15!NCOA7;;chr14:69262789..69262822,-!p2@ZFP36L1!0.59!8.60!ZFP36L1;;chr6:15249128..15249177,+!p4@JARID2!0.59!5.73!JARID2;;chr8:71316428..71316459,-!p2@NCOA2!0.59!5.42!NCOA2;;chrX:131623932..131623964,-!p7@MBNL3!0.59!4.46!MBNL3;;chr7:150102756..150102772,+!p5@ZNF775!0.59!2.87!ZNF775;;chr7:63505799..63505904,+!p1@ZNF727!0.59!2.87!ZNF727;;chr17:45810816..45810838,+!p2@TBX21!0.59!2.87!TBX21;;chr17:46621146..46621180,-!p10@HOXB2!0.59!2.87!HOXB2;;chr2:100759010..100759035,-!p1@AFF3!0.59!2.87!AFF3;;chr3:71353892..71353928,-!p31@FOXP1!0.59!2.87!FOXP1;;chr4:109087906..109087928,-!p12@LEF1!0.59!2.87!LEF1;;chr12:54778471..54778528,-!p1@ZNF385A!0.59!2.87!ZNF385A;;chr19:38183138..38183157,-!p2@ZNF781!0.59!2.87!ZNF781;;chr14:64970494..64970578,-!p1@ZBTB25!0.58!34.72!ZBTB25;;chr7:64838754..64838778,+!p1@ZNF92!0.58!33.13!ZNF92;;chr6:109804412..109804458,-!p1@ZBTB24!0.58!29.95!ZBTB24;;chr1:249132410..249132456,+!p1@ZNF672!0.58!25.80!ZNF672;;chr19:21579908..21579949,+!p1@ZNF493!0.58!20.39!ZNF493;;chr8:67525524..67525543,-!p3@MYBL1!0.58!5.10!MYBL1;;chr19:49139477..49139552,-!p4@DBP!0.58!3.82!DBP;;chr17:42295777..42295816,-!p7@UBTF!0.58!3.50!UBTF;;chr7:86781734..86781777,+!p1@DMTF1!0.57!61.80!DMTF1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.57!21.98!ZNF580;;chr19:38270215..38270251,-!p1@ZNF573!0.57!13.38!ZNF573;;chr19:58694742..58694800,+!p2@ZNF274!0.57!13.38!ZNF274;;chr19:12405645..12405685,-!p1@ZNF44!0.57!11.47!ZNF44;;chr12:133707021..133707071,-!p2@ZNF891!0.57!5.10!ZNF891;;chr1:67395855..67395872,+!p5@MIER1!0.57!4.46!MIER1;;chr19:37464063..37464127,+!p2@ZNF568!0.57!3.82!ZNF568;;chr2:231191875..231191918,+!p1@SP140L!0.56!31.54!SP140L;;chr9:73028332..73028385,-!p3@KLF9!0.56!10.83!KLF9;;chr17:38256973..38256990,-!p5@NR1D1!0.56!7.01!NR1D1;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.46!UBP1;;chr19:58239007..58239016,-!p2@ZNF671!0.56!3.50!ZNF671;;chr10:44144292..44144338,-!p1@ZNF32!0.55!20.39!ZNF32;;chr3:23986824..23986848,+!p2@NR1D2!0.55!17.52!NR1D2;;chr4:87928142..87928165,+!p5@AFF1!0.55!10.51!AFF1;;chr16:29817433..29817468,+!p8@MAZ!0.55!9.56!MAZ;;chr9:97021572..97021615,+!p1@ZNF169!0.55!7.65!ZNF169;;chr9:20621927..20621996,-!p3@MLLT3!0.55!4.78!MLLT3;;chr6:45390269..45390298,+!p5@RUNX2!0.55!4.78!RUNX2;;chr5:142814241..142814278,-!p12@NR3C1!0.55!2.55!NR3C1;;chr7:50343800..50343811,+!p8@IKZF1!0.55!2.55!IKZF1;;chr7:92076686..92076700,+!p3@GATAD1!0.55!2.55!GATAD1;;chr3:27764190..27764208,-!p2@EOMES!0.55!2.55!EOMES;;chr4:109089290..109089320,-!p14@LEF1!0.55!2.55!LEF1;;chr10:35416223..35416234,+!p12@CREM!0.55!2.55!CREM;;chr13:41593493..41593506,-!p8@ELF1!0.55!2.55!ELF1;;chr9:32551047..32551066,-!p5@TOPORS!0.55!2.55!TOPORS;;chr19:22193731..22193751,-!p1@ZNF208!0.55!2.55!ZNF208;;chr15:31619326..31619390,+!p2@KLF13!0.54!35.68!KLF13;;chr7:64126503..64126528,+!p1@ZNF107!0.54!21.66!ZNF107;;chr20:25677465..25677497,-!p1@ZNF337!0.54!19.11!ZNF337;;chr2:95831389..95831432,-!p1@ZNF514!0.54!13.06!ZNF514;;chr19:37709076..37709154,+!p1@ZNF383!0.54!9.88!ZNF383;;chr2:97202451..97202462,+!p2@ARID5A!0.54!6.37!ARID5A;;chr8:125985531..125985571,+!p1@ZNF572!0.54!5.73!ZNF572;;chr6:42419649..42419673,-!p3@TRERF1!0.54!4.78!TRERF1;;chr19:49140595..49140607,-!p3@DBP!0.54!3.82!DBP;;chr2:174828545..174828644,-!p1@SP3!0.53!47.15!SP3;;chr4:331578..331615,+!p1@ZNF141!0.53!32.81!ZNF141;;chr2:208031542..208031595,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12176.12186-129A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12186-129A8 | |id=FF:12186-129A8 | ||
|is_a=EFO:0002091;;FF:0000030;;FF:0000210 | |is_a=EFO:0002091;;FF:0000030;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12176 | |library_id=CNhs12176!RDhi10014 | ||
|library_id_phase_based=2:CNhs12176 | |library_id_phase_based=2:CNhs12176 | ||
|name= | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12186 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12186 | |||
|name=CD8+ T Cells (pluriselect), donor090309, donation1 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage= | |profile_hcage=CNhs12176,LSID975,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 72: | Line 83: | ||
|sample_cell_line= | |sample_cell_line= | ||
|sample_cell_lot=090309-02 | |sample_cell_lot=090309-02 | ||
|sample_cell_type= | |sample_cell_type=T cell, CD8+ | ||
|sample_collaboration=Matched_genome_OSC(contact:Al Forrest) | |sample_collaboration=Matched_genome_OSC(contact:Al Forrest) | ||
|sample_company= | |sample_company= | ||
Line 90: | Line 101: | ||
|top_motifs=ELF1,2,4:2.56360410536;RUNX1..3:2.29312340765;CDX1,2,4:2.13507900242;FOXO1,3,4:2.07950141402;PAX3,7:2.04549768989;ETS1,2:1.9901261018;PDX1:1.93270279666;STAT1,3:1.80371474367;FOX{D1,D2}:1.70577829081;RORA:1.62928879854;T:1.61804502138;FOX{F1,F2,J1}:1.53156315467;ELK1,4_GABP{A,B1}:1.49695935744;SPI1:1.42866368806;TLX2:1.3677390762;IRF1,2:1.27284446415;DMAP1_NCOR{1,2}_SMARC:1.27038927328;HMX1:1.16785050776;BPTF:1.13020145684;SPIB:1.08647948546;PBX1:1.07556375296;LEF1_TCF7_TCF7L1,2:1.06038657009;GATA6:0.990750583133;NKX6-1,2:0.974247283317;YY1:0.961307152471;PAX6:0.957996629539;CREB1:0.954862696658;ZBTB16:0.911007256074;IKZF2:0.901216615722;NANOG{mouse}:0.831038432249;IRF7:0.799479190742;BREu{core}:0.788227546495;MYOD1:0.730775288186;NKX2-2,8:0.718545002745;TGIF1:0.694118934076;FOXA2:0.681383512129;RFX2..5_RFXANK_RFXAP:0.631386617941;PAX4:0.568267369964;VSX1,2:0.568191151066;CRX:0.548950925739;SOX5:0.533488102454;FOXN1:0.500191486156;ATF5_CREB3:0.478620186282;HOX{A6,A7,B6,B7}:0.424194761663;ZEB1:0.390432650561;SNAI1..3:0.367590528467;NRF1:0.34918802115;LMO2:0.332990611215;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.312320524692;FOXP1:0.307330601652;SPZ1:0.29203204703;NFKB1_REL_RELA:0.274245400035;FOX{I1,J2}:0.261143808566;FOXP3:0.255014913836;EP300:0.246686010468;ADNP_IRX_SIX_ZHX:0.237648466967;NR1H4:0.23507538879;CUX2:0.222803611779;NFIL3:0.219481139534;NKX2-1,4:0.214328150201;ZNF143:0.213839211947;NR5A1,2:0.212628442554;POU1F1:0.207145271957;NFATC1..3:0.186381205172;NFIX:0.18223757121;PAX2:0.176647038603;RBPJ:0.16404452537;SOX2:0.126704415054;POU2F1..3:0.115338614745;AR:0.106272060819;MYB:0.0958160958779;SREBF1,2:0.0673731813578;ALX1:0.0640863319974;OCT4_SOX2{dimer}:0.0634488038577;PRRX1,2:0.0427472248183;ATF2:0.0242754307412;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.014747514708;FOXD3:-0.0225863910279;STAT5{A,B}:-0.0436488427767;STAT2,4,6:-0.0440243939359;AHR_ARNT_ARNT2:-0.0549102453126;TAL1_TCF{3,4,12}:-0.0582924021886;HES1:-0.0882439223144;ZNF148:-0.161009000556;E2F1..5:-0.174955230987;DBP:-0.180716659859;FOXQ1:-0.189515832432;GCM1,2:-0.199145788136;HNF4A_NR2F1,2:-0.205587971587;NFY{A,B,C}:-0.242951641019;RXRA_VDR{dimer}:-0.264206721415;HNF1A:-0.285125884869;GLI1..3:-0.313616880424;JUN:-0.315989450167;ATF4:-0.322545929512;CEBPA,B_DDIT3:-0.338644234244;TBX4,5:-0.352748090391;HAND1,2:-0.359577489231;PAX5:-0.3675672233;GFI1:-0.372835428244;MYFfamily:-0.376729591676;NANOG:-0.391223080858;NHLH1,2:-0.392565432624;SMAD1..7,9:-0.399839455975;NR3C1:-0.4131858439;TFAP4:-0.413764604647;FOSL2:-0.423272609521;NKX3-1:-0.434283020042;PITX1..3:-0.435334668278;AIRE:-0.483557975945;POU5F1:-0.486291275222;ONECUT1,2:-0.489925086629;ARID5B:-0.498977844021;PAX8:-0.512378112468;NFE2L2:-0.512700640639;RREB1:-0.522153021439;FOXM1:-0.526593803866;ALX4:-0.537049124336;NFE2L1:-0.561360169088;FOS_FOS{B,L1}_JUN{B,D}:-0.569516915972;BACH2:-0.57354474292;ZNF423:-0.582784117277;ESR1:-0.606396137407;ZNF384:-0.623691020975;HLF:-0.626978979989;MZF1:-0.63616537263;MEF2{A,B,C,D}:-0.662940962331;EGR1..3:-0.668709723559;MTF1:-0.669607004824;NKX2-3_NKX2-5:-0.686627870018;HMGA1,2:-0.68775841057;HBP1_HMGB_SSRP1_UBTF:-0.691156037516;ATF6:-0.707799224849;NFE2:-0.716566295179;RFX1:-0.717100389395;TFCP2:-0.719803974559;SRF:-0.744275893713;ZFP161:-0.771028118054;EVI1:-0.78595810128;HOXA9_MEIS1:-0.787654583287;REST:-0.789267811751;MAFB:-0.79994655919;MED-1{core}:-0.804934115445;SOX{8,9,10}:-0.847520944938;ZNF238:-0.900900366835;HIF1A:-0.928405629257;LHX3,4:-0.93852423018;MYBL2:-0.963384391469;CDC5L:-0.966051525519;EN1,2:-0.982706164455;MAZ:-0.983543327389;NR6A1:-1.00554384963;MTE{core}:-1.00577582595;PATZ1:-1.00919854123;XCPE1{core}:-1.02667287326;KLF4:-1.05260763707;PRDM1:-1.05641228857;ZBTB6:-1.0666870488;GFI1B:-1.07808029562;PPARG:-1.07872028612;TFDP1:-1.08404954265;POU6F1:-1.09620182319;TOPORS:-1.1069545759;TP53:-1.11008684628;SOX17:-1.12069908985;GATA4:-1.12114597686;HSF1,2:-1.14138375008;bHLH_family:-1.14459647484;TEF:-1.16012894711;HOX{A4,D4}:-1.20274950939;HOX{A5,B5}:-1.2262234773;GTF2I:-1.23825781605;UFEwm:-1.24297560372;EBF1:-1.34193609108;TFAP2B:-1.36367098779;GZF1:-1.36736263727;FOXL1:-1.37121998575;GTF2A1,2:-1.38555572287;NKX3-2:-1.41398974062;HIC1:-1.42933926545;TLX1..3_NFIC{dimer}:-1.47448405801;TBP:-1.49722599976;ZIC1..3:-1.50682425326;SP1:-1.52977271993;XBP1:-1.59111248146;ESRRA:-1.62434241562;POU3F1..4:-1.6679948696;TEAD1:-1.6962556731;RXR{A,B,G}:-1.74173701767;TFAP2{A,C}:-1.75651411661;IKZF1:-2.31444197027;PAX1,9:-2.35356289672 | |top_motifs=ELF1,2,4:2.56360410536;RUNX1..3:2.29312340765;CDX1,2,4:2.13507900242;FOXO1,3,4:2.07950141402;PAX3,7:2.04549768989;ETS1,2:1.9901261018;PDX1:1.93270279666;STAT1,3:1.80371474367;FOX{D1,D2}:1.70577829081;RORA:1.62928879854;T:1.61804502138;FOX{F1,F2,J1}:1.53156315467;ELK1,4_GABP{A,B1}:1.49695935744;SPI1:1.42866368806;TLX2:1.3677390762;IRF1,2:1.27284446415;DMAP1_NCOR{1,2}_SMARC:1.27038927328;HMX1:1.16785050776;BPTF:1.13020145684;SPIB:1.08647948546;PBX1:1.07556375296;LEF1_TCF7_TCF7L1,2:1.06038657009;GATA6:0.990750583133;NKX6-1,2:0.974247283317;YY1:0.961307152471;PAX6:0.957996629539;CREB1:0.954862696658;ZBTB16:0.911007256074;IKZF2:0.901216615722;NANOG{mouse}:0.831038432249;IRF7:0.799479190742;BREu{core}:0.788227546495;MYOD1:0.730775288186;NKX2-2,8:0.718545002745;TGIF1:0.694118934076;FOXA2:0.681383512129;RFX2..5_RFXANK_RFXAP:0.631386617941;PAX4:0.568267369964;VSX1,2:0.568191151066;CRX:0.548950925739;SOX5:0.533488102454;FOXN1:0.500191486156;ATF5_CREB3:0.478620186282;HOX{A6,A7,B6,B7}:0.424194761663;ZEB1:0.390432650561;SNAI1..3:0.367590528467;NRF1:0.34918802115;LMO2:0.332990611215;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.312320524692;FOXP1:0.307330601652;SPZ1:0.29203204703;NFKB1_REL_RELA:0.274245400035;FOX{I1,J2}:0.261143808566;FOXP3:0.255014913836;EP300:0.246686010468;ADNP_IRX_SIX_ZHX:0.237648466967;NR1H4:0.23507538879;CUX2:0.222803611779;NFIL3:0.219481139534;NKX2-1,4:0.214328150201;ZNF143:0.213839211947;NR5A1,2:0.212628442554;POU1F1:0.207145271957;NFATC1..3:0.186381205172;NFIX:0.18223757121;PAX2:0.176647038603;RBPJ:0.16404452537;SOX2:0.126704415054;POU2F1..3:0.115338614745;AR:0.106272060819;MYB:0.0958160958779;SREBF1,2:0.0673731813578;ALX1:0.0640863319974;OCT4_SOX2{dimer}:0.0634488038577;PRRX1,2:0.0427472248183;ATF2:0.0242754307412;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.014747514708;FOXD3:-0.0225863910279;STAT5{A,B}:-0.0436488427767;STAT2,4,6:-0.0440243939359;AHR_ARNT_ARNT2:-0.0549102453126;TAL1_TCF{3,4,12}:-0.0582924021886;HES1:-0.0882439223144;ZNF148:-0.161009000556;E2F1..5:-0.174955230987;DBP:-0.180716659859;FOXQ1:-0.189515832432;GCM1,2:-0.199145788136;HNF4A_NR2F1,2:-0.205587971587;NFY{A,B,C}:-0.242951641019;RXRA_VDR{dimer}:-0.264206721415;HNF1A:-0.285125884869;GLI1..3:-0.313616880424;JUN:-0.315989450167;ATF4:-0.322545929512;CEBPA,B_DDIT3:-0.338644234244;TBX4,5:-0.352748090391;HAND1,2:-0.359577489231;PAX5:-0.3675672233;GFI1:-0.372835428244;MYFfamily:-0.376729591676;NANOG:-0.391223080858;NHLH1,2:-0.392565432624;SMAD1..7,9:-0.399839455975;NR3C1:-0.4131858439;TFAP4:-0.413764604647;FOSL2:-0.423272609521;NKX3-1:-0.434283020042;PITX1..3:-0.435334668278;AIRE:-0.483557975945;POU5F1:-0.486291275222;ONECUT1,2:-0.489925086629;ARID5B:-0.498977844021;PAX8:-0.512378112468;NFE2L2:-0.512700640639;RREB1:-0.522153021439;FOXM1:-0.526593803866;ALX4:-0.537049124336;NFE2L1:-0.561360169088;FOS_FOS{B,L1}_JUN{B,D}:-0.569516915972;BACH2:-0.57354474292;ZNF423:-0.582784117277;ESR1:-0.606396137407;ZNF384:-0.623691020975;HLF:-0.626978979989;MZF1:-0.63616537263;MEF2{A,B,C,D}:-0.662940962331;EGR1..3:-0.668709723559;MTF1:-0.669607004824;NKX2-3_NKX2-5:-0.686627870018;HMGA1,2:-0.68775841057;HBP1_HMGB_SSRP1_UBTF:-0.691156037516;ATF6:-0.707799224849;NFE2:-0.716566295179;RFX1:-0.717100389395;TFCP2:-0.719803974559;SRF:-0.744275893713;ZFP161:-0.771028118054;EVI1:-0.78595810128;HOXA9_MEIS1:-0.787654583287;REST:-0.789267811751;MAFB:-0.79994655919;MED-1{core}:-0.804934115445;SOX{8,9,10}:-0.847520944938;ZNF238:-0.900900366835;HIF1A:-0.928405629257;LHX3,4:-0.93852423018;MYBL2:-0.963384391469;CDC5L:-0.966051525519;EN1,2:-0.982706164455;MAZ:-0.983543327389;NR6A1:-1.00554384963;MTE{core}:-1.00577582595;PATZ1:-1.00919854123;XCPE1{core}:-1.02667287326;KLF4:-1.05260763707;PRDM1:-1.05641228857;ZBTB6:-1.0666870488;GFI1B:-1.07808029562;PPARG:-1.07872028612;TFDP1:-1.08404954265;POU6F1:-1.09620182319;TOPORS:-1.1069545759;TP53:-1.11008684628;SOX17:-1.12069908985;GATA4:-1.12114597686;HSF1,2:-1.14138375008;bHLH_family:-1.14459647484;TEF:-1.16012894711;HOX{A4,D4}:-1.20274950939;HOX{A5,B5}:-1.2262234773;GTF2I:-1.23825781605;UFEwm:-1.24297560372;EBF1:-1.34193609108;TFAP2B:-1.36367098779;GZF1:-1.36736263727;FOXL1:-1.37121998575;GTF2A1,2:-1.38555572287;NKX3-2:-1.41398974062;HIC1:-1.42933926545;TLX1..3_NFIC{dimer}:-1.47448405801;TBP:-1.49722599976;ZIC1..3:-1.50682425326;SP1:-1.52977271993;XBP1:-1.59111248146;ESRRA:-1.62434241562;POU3F1..4:-1.6679948696;TEAD1:-1.6962556731;RXR{A,B,G}:-1.74173701767;TFAP2{A,C}:-1.75651411661;IKZF1:-2.31444197027;PAX1,9:-2.35356289672 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12186-129A8;search_select_hide=table117:FF:12186-129A8 | |||
}} | }} |
Latest revision as of 18:33, 4 June 2020
Name: | CD8+ T Cells (pluriselect), donor090309, donation1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12176,RDhi10014 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12176
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12176
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.234 |
10 | 10 | 0.0201 |
100 | 100 | 0.982 |
101 | 101 | 0.317 |
102 | 102 | 0.71 |
103 | 103 | 0.261 |
104 | 104 | 0.382 |
105 | 105 | 0.0738 |
106 | 106 | 0.902 |
107 | 107 | 0.0976 |
108 | 108 | 0.708 |
109 | 109 | 0.05 |
11 | 11 | 0.0902 |
110 | 110 | 0.383 |
111 | 111 | 0.45 |
112 | 112 | 0.35 |
113 | 113 | 0.213 |
114 | 114 | 0.229 |
115 | 115 | 0.204 |
116 | 116 | 0.757 |
117 | 117 | 0.00487 |
118 | 118 | 0.405 |
119 | 119 | 0.574 |
12 | 12 | 0.587 |
120 | 120 | 0.619 |
121 | 121 | 0.963 |
122 | 122 | 0.258 |
123 | 123 | 0.0498 |
124 | 124 | 0.157 |
125 | 125 | 0.943 |
126 | 126 | 0.267 |
127 | 127 | 0.589 |
128 | 128 | 0.949 |
129 | 129 | 0.534 |
13 | 13 | 0.541 |
130 | 130 | 0.697 |
131 | 131 | 0.648 |
132 | 132 | 0.804 |
133 | 133 | 0.577 |
134 | 134 | 0.952 |
135 | 135 | 0.385 |
136 | 136 | 0.964 |
137 | 137 | 0.137 |
138 | 138 | 0.389 |
139 | 139 | 0.0136 |
14 | 14 | 0.32 |
140 | 140 | 0.0806 |
141 | 141 | 0.732 |
142 | 142 | 0.383 |
143 | 143 | 5.59235e-5 |
144 | 144 | 0.925 |
145 | 145 | 0.306 |
146 | 146 | 0.129 |
147 | 147 | 0.0462 |
148 | 148 | 0.144 |
149 | 149 | 0.767 |
15 | 15 | 0.0768 |
150 | 150 | 0.758 |
151 | 151 | 0.224 |
152 | 152 | 0.384 |
153 | 153 | 0.751 |
154 | 154 | 0.945 |
155 | 155 | 0.029 |
156 | 156 | 0.707 |
157 | 157 | 0.307 |
158 | 158 | 0.228 |
159 | 159 | 0.0802 |
16 | 16 | 0.821 |
160 | 160 | 0.743 |
161 | 161 | 0.346 |
162 | 162 | 0.303 |
163 | 163 | 0.93 |
164 | 164 | 0.249 |
165 | 165 | 0.643 |
166 | 166 | 0.4 |
167 | 167 | 0.291 |
168 | 168 | 0.192 |
169 | 169 | 0.91 |
17 | 17 | 0.914 |
18 | 18 | 0.773 |
19 | 19 | 0.307 |
2 | 2 | 0.767 |
20 | 20 | 0.965 |
21 | 21 | 0.45 |
22 | 22 | 0.974 |
23 | 23 | 0.64 |
24 | 24 | 0.603 |
25 | 25 | 0.0418 |
26 | 26 | 0.349 |
27 | 27 | 0.0407 |
28 | 28 | 0.363 |
29 | 29 | 0.0754 |
3 | 3 | 0.0357 |
30 | 30 | 0.471 |
31 | 31 | 0.91 |
32 | 32 | 0.118 |
33 | 33 | 0.467 |
34 | 34 | 0.947 |
35 | 35 | 0.101 |
36 | 36 | 0.0291 |
37 | 37 | 0.207 |
38 | 38 | 0.594 |
39 | 39 | 0.398 |
4 | 4 | 0.8 |
40 | 40 | 0.57 |
41 | 41 | 0.187 |
42 | 42 | 0.0455 |
43 | 43 | 0.246 |
44 | 44 | 0.575 |
45 | 45 | 0.806 |
46 | 46 | 0.15 |
47 | 47 | 0.066 |
48 | 48 | 0.147 |
49 | 49 | 0.14 |
5 | 5 | 0.171 |
50 | 50 | 0.523 |
51 | 51 | 0.564 |
52 | 52 | 0.252 |
53 | 53 | 0.205 |
54 | 54 | 0.562 |
55 | 55 | 0.22 |
56 | 56 | 0.505 |
57 | 57 | 0.555 |
58 | 58 | 0.0497 |
59 | 59 | 0.479 |
6 | 6 | 0.881 |
60 | 60 | 0.382 |
61 | 61 | 0.0819 |
62 | 62 | 0.023 |
63 | 63 | 0.773 |
64 | 64 | 0.224 |
65 | 65 | 0.767 |
66 | 66 | 0.706 |
67 | 67 | 0.957 |
68 | 68 | 0.656 |
69 | 69 | 0.892 |
7 | 7 | 0.176 |
70 | 70 | 0.0106 |
71 | 71 | 0.13 |
72 | 72 | 0.0652 |
73 | 73 | 0.673 |
74 | 74 | 0.673 |
75 | 75 | 0.0145 |
76 | 76 | 0.185 |
77 | 77 | 0.415 |
78 | 78 | 0.0863 |
79 | 79 | 0.199 |
8 | 8 | 0.982 |
80 | 80 | 9.17574e-4 |
81 | 81 | 0.31 |
82 | 82 | 0.0987 |
83 | 83 | 0.966 |
84 | 84 | 0.345 |
85 | 85 | 0.687 |
86 | 86 | 0.184 |
87 | 87 | 0.671 |
88 | 88 | 0.869 |
89 | 89 | 0.824 |
9 | 9 | 0.489 |
90 | 90 | 0.0165 |
91 | 91 | 0.952 |
92 | 92 | 0.398 |
93 | 93 | 0.279 |
94 | 94 | 0.0938 |
95 | 95 | 0.0105 |
96 | 96 | 0.221 |
97 | 97 | 0.381 |
98 | 98 | 0.135 |
99 | 99 | 0.0876 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12176
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)