FF:12201-129C5: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090612, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12182,RDhi10017
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013678

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12182		CAGE		DRX008069		DRR008941
RDhi10017		RNA-Seq		DRX012350		DRR013798

Accession ID Hg19

Library id		BAM		CTSS
CNhs12182		DRZ000366		DRZ001751
RDhi10017		DRZ002999

Accession ID Hg38

Library id		BAM		CTSS
CNhs12182		DRZ011716		DRZ013101
RDhi10017

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.256
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.408
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.356
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.86
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.515
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.405
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.544
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.551
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.352
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.544
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.518
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.256
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.352
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.079
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.352
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.352
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	1.01
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.86
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12182

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.12275e-10
MA0003.1	MA0003.1	0.377
MA0004.1	MA0004.1	0.988
MA0006.1	MA0006.1	0.578
MA0007.1	MA0007.1	0.997
MA0009.1	MA0009.1	0.249
MA0014.1	MA0014.1	0.644
MA0017.1	MA0017.1	0.0259
MA0018.2	MA0018.2	0.356
MA0019.1	MA0019.1	0.866
MA0024.1	MA0024.1	0.122
MA0025.1	MA0025.1	0.689
MA0027.1	MA0027.1	0.723
MA0028.1	MA0028.1	0.0234
MA0029.1	MA0029.1	0.987
MA0030.1	MA0030.1	0.366
MA0031.1	MA0031.1	0.0281
MA0035.2	MA0035.2	0.107
MA0038.1	MA0038.1	0.116
MA0039.2	MA0039.2	0.836
MA0040.1	MA0040.1	0.677
MA0041.1	MA0041.1	0.607
MA0042.1	MA0042.1	0.553
MA0043.1	MA0043.1	0.251
MA0046.1	MA0046.1	0.94
MA0047.2	MA0047.2	0.0679
MA0048.1	MA0048.1	0.248
MA0050.1	MA0050.1	1.85035e-6
MA0051.1	MA0051.1	0.00414
MA0052.1	MA0052.1	0.00741
MA0055.1	MA0055.1	0.318
MA0057.1	MA0057.1	0.796
MA0058.1	MA0058.1	0.906
MA0059.1	MA0059.1	0.321
MA0060.1	MA0060.1	0.0214
MA0061.1	MA0061.1	0.00389
MA0062.2	MA0062.2	1.44118e-9
MA0065.2	MA0065.2	0.0178
MA0066.1	MA0066.1	0.0934
MA0067.1	MA0067.1	0.87
MA0068.1	MA0068.1	0.825
MA0069.1	MA0069.1	0.66
MA0070.1	MA0070.1	0.396
MA0071.1	MA0071.1	0.481
MA0072.1	MA0072.1	0.324
MA0073.1	MA0073.1	0.866
MA0074.1	MA0074.1	0.714
MA0076.1	MA0076.1	0.00205
MA0077.1	MA0077.1	0.168
MA0078.1	MA0078.1	0.809
MA0079.2	MA0079.2	0.272
MA0080.2	MA0080.2	1.99224e-14
MA0081.1	MA0081.1	0.00848
MA0083.1	MA0083.1	0.15
MA0084.1	MA0084.1	0.802
MA0087.1	MA0087.1	0.926
MA0088.1	MA0088.1	0.0739
MA0090.1	MA0090.1	0.00423
MA0091.1	MA0091.1	0.655
MA0092.1	MA0092.1	0.569
MA0093.1	MA0093.1	0.879
MA0099.2	MA0099.2	0.785
MA0100.1	MA0100.1	0.732
MA0101.1	MA0101.1	0.524
MA0102.2	MA0102.2	0.559
MA0103.1	MA0103.1	0.129
MA0104.2	MA0104.2	0.212
MA0105.1	MA0105.1	7.30713e-7
MA0106.1	MA0106.1	0.788
MA0107.1	MA0107.1	0.477
MA0108.2	MA0108.2	7.05723e-9
MA0111.1	MA0111.1	0.245
MA0112.2	MA0112.2	0.0307
MA0113.1	MA0113.1	0.56
MA0114.1	MA0114.1	0.118
MA0115.1	MA0115.1	0.941
MA0116.1	MA0116.1	8.39917e-6
MA0117.1	MA0117.1	0.731
MA0119.1	MA0119.1	0.54
MA0122.1	MA0122.1	0.268
MA0124.1	MA0124.1	0.741
MA0125.1	MA0125.1	0.309
MA0131.1	MA0131.1	0.789
MA0135.1	MA0135.1	0.612
MA0136.1	MA0136.1	7.66885e-23
MA0137.2	MA0137.2	0.05
MA0138.2	MA0138.2	0.84
MA0139.1	MA0139.1	0.0209
MA0140.1	MA0140.1	0.03
MA0141.1	MA0141.1	0.566
MA0142.1	MA0142.1	0.9
MA0143.1	MA0143.1	0.626
MA0144.1	MA0144.1	0.132
MA0145.1	MA0145.1	0.633
MA0146.1	MA0146.1	0.338
MA0147.1	MA0147.1	0.193
MA0148.1	MA0148.1	0.164
MA0149.1	MA0149.1	0.2
MA0150.1	MA0150.1	0.807
MA0152.1	MA0152.1	0.077
MA0153.1	MA0153.1	0.807
MA0154.1	MA0154.1	0.00107
MA0155.1	MA0155.1	0.975
MA0156.1	MA0156.1	3.53298e-19
MA0157.1	MA0157.1	0.0146
MA0159.1	MA0159.1	0.0687
MA0160.1	MA0160.1	0.307
MA0162.1	MA0162.1	0.66
MA0163.1	MA0163.1	3.46983e-14
MA0164.1	MA0164.1	0.531
MA0258.1	MA0258.1	0.0561
MA0259.1	MA0259.1	0.504

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12182

Novel motif	Logo	P-value
1	1	0.17
10	10	0.03
100	100	0.917
101	101	0.247
102	102	0.88
103	103	0.271
104	104	0.385
105	105	0.0699
106	106	0.32
107	107	0.876
108	108	0.84
109	109	0.102
11	11	0.0629
110	110	0.411
111	111	0.225
112	112	0.148
113	113	0.147
114	114	0.0899
115	115	0.136
116	116	0.982
117	117	0.0206
118	118	0.436
119	119	0.297
12	12	0.942
120	120	0.311
121	121	0.783
122	122	0.371
123	123	0.082
124	124	0.0648
125	125	0.984
126	126	0.16
127	127	0.3
128	128	0.342
129	129	0.469
13	13	0.638
130	130	0.853
131	131	0.614
132	132	0.932
133	133	0.681
134	134	0.757
135	135	0.125
136	136	0.611
137	137	0.0957
138	138	0.3
139	139	0.00591
14	14	0.333
140	140	0.0961
141	141	0.625
142	142	0.804
143	143	2.42703e-5
144	144	0.826
145	145	0.318
146	146	0.0996
147	147	0.0659
148	148	0.0535
149	149	0.54
15	15	0.0508
150	150	0.646
151	151	0.203
152	152	0.626
153	153	0.884
154	154	0.894
155	155	0.0777
156	156	0.528
157	157	0.593
158	158	0.186
159	159	0.223
16	16	0.575
160	160	0.458
161	161	0.34
162	162	0.394
163	163	0.824
164	164	0.476
165	165	0.201
166	166	0.689
167	167	0.326
168	168	0.112
169	169	0.353
17	17	0.483
18	18	0.395
19	19	0.915
2	2	0.492
20	20	0.547
21	21	0.345
22	22	0.743
23	23	0.521
24	24	0.471
25	25	0.0736
26	26	0.384
27	27	0.0492
28	28	0.549
29	29	0.212
3	3	0.0498
30	30	0.719
31	31	0.746
32	32	0.252
33	33	0.421
34	34	0.727
35	35	0.0561
36	36	0.0137
37	37	0.213
38	38	0.525
39	39	0.772
4	4	0.766
40	40	0.466
41	41	0.113
42	42	0.0674
43	43	0.176
44	44	0.527
45	45	0.911
46	46	0.0667
47	47	0.108
48	48	0.162
49	49	0.0972
5	5	0.113
50	50	0.691
51	51	0.515
52	52	0.637
53	53	0.159
54	54	0.449
55	55	0.167
56	56	0.543
57	57	0.454
58	58	0.0353
59	59	0.247
6	6	0.773
60	60	0.244
61	61	0.177
62	62	0.0125
63	63	0.497
64	64	0.192
65	65	0.473
66	66	0.924
67	67	0.897
68	68	0.81
69	69	0.784
7	7	0.146
70	70	0.0144
71	71	0.0621
72	72	0.129
73	73	0.68
74	74	0.241
75	75	0.0493
76	76	0.432
77	77	0.98
78	78	0.17
79	79	0.351
8	8	0.525
80	80	0.00737
81	81	0.282
82	82	0.0483
83	83	0.732
84	84	0.408
85	85	0.634
86	86	0.28
87	87	0.938
88	88	0.88
89	89	0.864
9	9	0.321
90	90	0.0278
91	91	0.621
92	92	0.121
93	93	0.153
94	94	0.0488
95	95	0.0468
96	96	0.0841
97	97	0.463
98	98	0.177
99	99	0.323

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12182

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007962!RNA-Seq@DRS012112
+|DRA_sample_Accession=RNA-Seq@SAMD00013678
+|accession_numbers=CAGE;DRX008069;DRR008941;DRZ000366;DRZ001751;DRZ011716;DRZ013101!RNA-Seq;DRX012350;DRR013798;DRZ002999;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.03!104.94!TCF7;;chr2:68592406..68592424,+!p1@PLEK!1.98!93.70!PLEK;;chr3:27763807..27763822,-!p1@EOMES!1.93!84.95!EOMES;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.21!TBX21;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.94!STAT4;;chr7:50343634..50343717,+!p2@IKZF1!1.86!71.21!IKZF1;;chr3:63953435..63953499,+!p1@ATXN7!1.79!59.97!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!1.69!63.71!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.68!123.68!AKNA;;chr2:231090433..231090469,+!p1@SP140!1.66!44.98!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.65!43.73!LEF1;;chr5:133450365..133450444,+!p1@TCF7!1.60!169.91!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.60!38.73!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.56!34.98!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.54!33.73!IKZF1;;chr1:26697243..26697258,-!p1@ZNF683!1.52!32.48!ZNF683;;chr1:25256756..25256774,-!p1@RUNX3!1.47!52.47!RUNX3;;chr14:75988771..75988826,+!p1@BATF!1.47!37.48!BATF;;chr20:50159198..50159299,-!p1@NFATC2!1.46!39.98!NFATC2;;chr3:18486354..18486377,-!p2@SATB1!1.45!33.73!SATB1;;chr19:16435625..16435682,+!p1@KLF2!1.44!820.79!KLF2;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.23!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.44!26.24!IKZF3;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.99!ZBP1;;chr3:71542615..71542644,-!p12@FOXP1!1.39!23.74!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.39!23.74!LEF1;;chr5:133451347..133451358,+!p3@TCF7!1.39!23.74!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.74!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.49!IKZF3;;chr2:231090471..231090504,+!p2@SP140!1.37!22.49!SP140;;chr3:71542684..71542720,-!p18@FOXP1!1.35!21.24!FOXP1;;chr11:47400078..47400106,-!p1@SPI1!1.35!21.24!SPI1;;chr15:60884706..60884743,-!p1@RORA!1.34!106.19!RORA;;chr6:106546808..106546833,+!p3@PRDM1!1.32!24.99!PRDM1;;chr11:128392273..128392308,-!p2@ETS1!1.27!73.71!ETS1;;chr6:91006518..91006570,-!p1@BACH2!1.27!39.98!BACH2;;chr17:38020557..38020572,-!p4@IKZF3!1.27!17.49!IKZF3;;chr19:19779619..19779670,+!p1@ZNF101!1.26!47.47!ZNF101;;chr4:57522166..57522260,-!p2@HOPX!1.24!18.74!HOPX;;chr11:128563948..128564003,+!p1@FLI1!1.21!178.65!FLI1;;chr6:391743..391759,+!p1@IRF4!1.20!14.99!IRF4;;chr3:71179699..71179744,-!p2@FOXP1!1.17!101.19!FOXP1;;chr13:41593425..41593480,-!p1@ELF1!1.17!86.20!ELF1;;chr10:8096772..8096787,+!p2@GATA3!1.17!16.24!GATA3;;chr17:38020481..38020506,-!p7@IKZF3!1.17!13.74!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.17!13.74!IKZF1;;chr8:60031619..60031676,-!p1@TOX!1.14!27.48!TOX;;chr3:71542651..71542683,-!p22@FOXP1!1.13!12.49!FOXP1;;chr1:26697189..26697205,-!p2@ZNF683!1.13!12.49!ZNF683;;chr11:128392085..128392232,-!p1@ETS1!1.11!398.53!ETS1;;chr16:88752889..88752921,-!p1@SNAI3!1.11!13.74!SNAI3;;chr14:99738138..99738163,-!p1@BCL11B!1.09!11.24!BCL11B;;chr20:52226313..52226350,-!p3@ZNF217!1.09!11.24!ZNF217;;chr21:36421347..36421380,-!p8@RUNX1!1.09!11.24!RUNX1;;chr4:109088089..109088101,-!p11@LEF1!1.09!11.24!LEF1;;chr7:50344144..50344157,+!p6@IKZF1!1.09!11.24!IKZF1;;chr9:3525727..3525828,-!p2@RFX3!1.08!28.73!RFX3;;chr9:117150303..117150312,-!p3@AKNA!1.07!13.74!AKNA;;chr21:36421535..36421610,-!p2@RUNX1!1.04!36.23!RUNX1;;chr4:185395633..185395651,-!p2@IRF2!1.04!16.24!IRF2;;chr13:74707894..74707947,-!p6@KLF12!1.04!11.24!KLF12;;chr1:92951607..92951661,-!p1@GFI1!1.04!9.99!GFI1;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.99!IKZF3;;chr6:106546731..106546755,+!p5@PRDM1!1.04!9.99!PRDM1;;chr6:106546786..106546802,+!p6@PRDM1!1.04!9.99!PRDM1;;chr6:45296048..45296082,+!p1@RUNX2!1.03!11.24!RUNX2;;chr14:64970670..64970712,-!p3@ZBTB25!1.00!19.99!ZBTB25;;chr8:72756023..72756055,-!p6@MSC!1.00!11.24!MSC;;chr12:54778471..54778528,-!p1@ZNF385A!0.99!8.75!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!0.99!8.75!IRF8;;chr4:109088940..109089037,-!p4@LEF1!0.99!8.75!LEF1;;chr4:109089901..109089930,-!p3@LEF1!0.99!8.75!LEF1;;chr19:19729477..19729542,-!p1@PBX4!0.98!18.74!PBX4;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!226.12!TSC22D3;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.99!GATA3;;chr16:68119324..68119364,+!p1@NFATC3!0.95!36.23!NFATC3;;chr16:89787937..89787971,+!p1@ZNF276!0.95!21.24!ZNF276;;chrX:101186981..101187030,-!p1@ZMAT1!0.94!26.24!ZMAT1;;chr2:178128250..178128293,-!p6@NFE2L2!0.94!19.99!NFE2L2;;chr16:79633894..79633954,-!p3@MAF!0.93!14.99!MAF;;chr17:46621311..46621332,-!p8@HOXB2!0.93!9.99!HOXB2;;chr14:75988831..75988847,+!p2@BATF!0.93!7.50!BATF;;chr2:192015677..192015691,-!p3@STAT4!0.93!7.50!STAT4;;chr2:231090344..231090361,-!p3@SP110!0.93!7.50!SP110;;chr4:57522598..57522664,-!p3@HOPX!0.93!7.50!HOPX;;chr21:36421147..36421193,-!p10@RUNX1!0.93!7.50!RUNX1;;chr19:20748574..20748599,-!p1@ZNF737!0.92!46.22!ZNF737;;chr19:53289995..53290050,-!p1@ZNF600!0.92!31.23!ZNF600;;chr19:38085768..38085821,+!p1@ZNF540!0.92!11.24!ZNF540;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr14:69262947..69262986,-!p3@ZFP36L1!0.91!8.75!ZFP36L1;;chr9:114287433..114287513,+!p1@ZNF483!0.90!18.74!ZNF483;;chr19:40502938..40502987,+!p1@ZNF546!0.88!17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chr19:20959098..20959117,+!p1@ZNF66P!0.58!13.74!ZNF66P;;chrX:131623044..131623089,-!p1@MBNL3!0.58!13.74!MBNL3;;chr19:58238958..58239000,-!p1@ZNF671!0.58!13.74!ZNF671;;chr12:57504975..57505019,-!p2@STAT6!0.58!13.74!STAT6;;chr9:115818951..115819011,-!p1@ZFP37!0.58!9.99!ZFP37;;chr19:44598534..44598559,+!p2@ZNF224!0.58!9.99!ZNF224;;chr16:4322948..4322975,-!p3@TFAP4!0.58!6.25!TFAP4;;chr19:37997297..37997362,+!p3@ZNF793!0.58!5.00!ZNF793;;chr8:81397846..81397860,+!p3@ZBTB10!0.58!3.75!ZBTB10;;chr19:37663572..37663630,-!p1@ZNF585A!0.57!38.73!ZNF585A;;chr7:129251531..129251601,+!p1@NRF1!0.57!37.48!NRF1;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.48!SMARCD2;;chr16:88519669..88519726,+!p1@ZFPM1!0.57!29.98!ZFPM1;;chr10:3827417..3827428,-!p3@KLF6!0.57!28.73!KLF6;;chr1:249132410..249132456,+!p1@ZNF672!0.57!24.99!ZNF672;;chr3:129158854..129158883,-!p3@MBD4!0.57!16.24!MBD4;;chr17:4981745..4981810,+!p1@ZFP3!0.57!16.24!ZFP3;;chr6:27440837..27440912,-!p1@ZNF184!0.57!14.99!ZNF184;;chr4:87928142..87928165,+!p5@AFF1!0.57!11.24!AFF1;;chr1:40997285..40997352,+!p1@ZNF684!0.57!11.24!ZNF684;;chr9:3525867..3525902,-!p3@RFX3!0.57!11.24!RFX3;;chr19:52408285..52408310,-!p3@ZNF649!0.57!7.50!ZNF649;;chr19:8942909..8942953,-!p2@ZNF558!0.57!7.50!ZNF558;;chr16:68119440..68119480,+!p4@NFATC3!0.57!5.00!NFATC3;;chr2:157198760..157198762,-!p5@NR4A2!0.57!3.75!NR4A2;;chr2:8822176..8822196,+!p1@ID2!0.56!467.24!ID2;;chr1:22778337..22778356,+!p1@ZBTB40!0.56!39.98!ZBTB40;;chr19:37064145..37064216,-!p1@ZNF529!0.56!27.48!ZNF529;;chr19:22018966..22019001,-!p1@ZNF43!0.56!18.74!ZNF43;;chr19:58144529..58144579,+!p1@ZNF211!0.56!17.49!ZNF211;;chr5:132299339..132299359,-!p4@AFF4!0.56!14.99!AFF4;;chr19:58326267..58326292,-!p1@ZNF552!0.56!11.24!ZNF552;;chr19:37960240..37960299,+!p1@ZNF570!0.56!11.24!ZNF570;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.56!8.75!ZNF525;;chr18:47814186..47814232,-!p2@CXXC1!0.56!6.25!CXXC1;;chr10:43932296..43932360,+!p1@ZNF487P!0.56!6.25!ZNF487P;;chr17:36861735..36861755,+!p4@MLLT6!0.56!5.00!MLLT6;;chr19:56904947..56904975,-!p2@ZNF582!0.56!5.00!ZNF582;;chr11:67007611..67007622,+!p6@KDM2A!0.56!3.75!KDM2A;;chr19:23578226..23578285,-!p1@ZNF91!0.55!53.72!ZNF91;;chr6:130339710..130339745,+!p1@L3MBTL3!0.55!24.99!L3MBTL3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.55!24.99!ZCCHC6;;chr2:208394704..208394715,+!p4@CREB1!0.55!9.99!CREB1;;chr19:36980429..36980448,-!p1@ZNF566!0.55!8.75!ZNF566;;chr2:157199008..157199023,-!p3@NR4A2!0.55!6.25!NR4A2;;chr19:9879350..9879419,-!p2@ZNF846!0.55!6.25!ZNF846;;chr19:45972701..45972774,+!p2@FOSB!0.55!3.75!FOSB;;chr15:41952591..41952672,+!p1@MGA!0.54!41.23!MGA;;chr7:99097863..99097936,-!p1@ZNF394!0.54!31.23!ZNF394;;chr17:40440481..40440550,+!p1@STAT5A!0.54!22.49!STAT5A;;chr3:187463179..187463201,-!p2@BCL6!0.54!12.49!BCL6;;chrX:134477924..134477988,-!p1@ZNF75D!0.54!11.24!ZNF75D;;chr19:37709076..37709154,+!p1@ZNF383!0.54!9.99!ZNF383;;chr19:37341160..37341194,-!p2@ZNF790!0.54!6.25!ZNF790;;chrX:129244655..129244697,-!p4@ELF4!0.54!5.00!ELF4;;chr8:123793988..123794016,+!p1@ZHX2!0.54!5.00!ZHX2;;chr19:49140595..49140607,-!p3@DBP!0.54!3.75!DBP;;chrX:107018969..107019024,-!p6@TSC22D3!0.54!3.75!TSC22D3;;chrX:134429952..134429971,-!p3@ZNF75D!0.54!2.50!ZNF75D;;chrX:118740008..118740045,-!p3@NKRF!0.54!2.50!NKRF;;chr9:32551047..32551066,-!p5@TOPORS!0.54!2.50!TOPORS;;chr5:142814241..142814278,-!p12@NR3C1!0.54!2.50!NR3C1;;chr5:142814316..142814335,-!p18@NR3C1!0.54!2.50!NR3C1;;chr5:142814347..142814358,-!p27@NR3C1!0.54!2.50!NR3C1;;chr6:106546871..106546878,+!p17@PRDM1!0.54!2.50!PRDM1;;chr6:152011654..152011682,+!p1@ESR1!0.54!2.50!ESR1;;chr6:29648890..29648944,-!p1@ZFP57!0.54!2.50!ZFP57;;chr6:36355431..36355466,-!p1@ETV7!0.54!2.50!ETV7;;chr7:115670804..115670825,-!p1@TFEC!0.54!2.50!TFEC;;chr7:50343478..50343494,+!p9@IKZF1!0.54!2.50!IKZF1;;chr7:50343800..50343811,+!p8@IKZF1!0.54!2.50!IKZF1;;chr8:72755987..72756002,-!p7@MSC!0.54!2.50!MSC;;chr14:75988851..75988862,+!p3@BATF!0.54!2.50!BATF;;chr14:99737588..99737617,-!p4@BCL11B!0.54!2.50!BCL11B;;chr16:79634447..79634462,-!p8@MAF!0.54!2.50!MAF;;chr16:88752861..88752884,-!p2@SNAI3!0.54!2.50!SNAI3;;chr17:41738709..41738733,-!p3@MEOX1!0.54!2.50!MEOX1;;chr17:46622175..46622186,-!p12@HOXB2!0.54!2.50!HOXB2;;chr19:22193731..22193751,-!p1@ZNF208!0.54!2.50!ZNF208;;chr19:35454968..35454984,-!p3@ZNF792!0.54!2.50!ZNF792;;chr10:31607335..31607354,+!p5@ZEB1!0.54!2.50!ZEB1;;chr10:35416172..35416184,+!p13@CREM!0.54!2.50!CREM;;chr10:35484090..35484104,+!p6@CREM!0.54!2.50!CREM;;chr10:51585449..51585487,+!p6@NCOA4!0.54!2.50!NCOA4;;chr11:111249993..111250006,-!p1@POU2AF1!0.54!2.50!POU2AF1;;chr11:19262421..19262455,-!p3@E2F8!0.54!2.50!E2F8;;chr11:47399920..47399931,-!p7@SPI1!0.54!2.50!SPI1;;chr12:54447219..54447237,+!p6@HOXC4!0.54!2.50!HOXC4;;chr12:54694653..54694672,-!p2@NFE2!0.54!2.50!NFE2;;chr13:41593392..41593403,-!p7@ELF1!0.54!2.50!ELF1;;chr14:64971893..64971928,-!p8@ZBTB25!0.54!2.50!ZBTB25;;chr14:65568389..65568408,-!p4@MAX!0.54!2.50!MAX;;chr1:151030388..151030419,+!p9@MLLT11!0.54!2.50!MLLT11;;chr1: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F1;;chr4:109088185..109088192,-!p32@LEF1!0.35!1.25!LEF1;;chr4:109089050..109089067,-!p26@LEF1!0.35!1.25!LEF1;;chr4:109089095..109089144,-!p6@LEF1!0.35!1.25!LEF1;;chr4:109089966..109089977,-!p15@LEF1!0.35!1.25!LEF1;;chr4:109090026..109090031,-!p20@LEF1!0.35!1.25!LEF1;;chr4:109090054..109090073,-!p7@LEF1!0.35!1.25!LEF1;;chr4:109090106..109090124,-!p10@LEF1!0.35!1.25!LEF1;;chr4:109090408..109090441,-!p21@LEF1!0.35!1.25!LEF1;;chr4:149363475..149363492,-!p2@NR3C2!0.35!1.25!NR3C2;;chr4:149363637..149363651,-!p4@NR3C2!0.35!1.25!NR3C2;;chr4:149365827..149365870,-!p5@NR3C2!0.35!1.25!NR3C2;;chr4:57522701..57522712,-!p10@HOPX!0.35!1.25!HOPX;;chr14:75746705..75746720,+!p8@FOS!0.35!1.25!FOS;;chr14:99639180..99639182,-!p7@BCL11B!0.35!1.25!BCL11B;;chr14:99737850..99737852,-!p3@BCL11B!0.35!1.25!BCL11B;;chr14:99737996..99738007,-!p5@BCL11B!0.35!1.25!BCL11B;;chr14:99738059..99738086,-!p2@BCL11B!0.35!1.25!BCL11B;;chr15:31684663..31684717,+!p10@KLF13!0.35!1.25!KLF13;;chr15:57212102..57212120,+!p18@TCF12!0.35!1.25!TCF12;;chr15:67391010..67391046,+!p13@SMAD3!0.35!1.25!SMAD3;;chr16:30621491..30621503,-!p7@ZNF689!0.35!1.25!ZNF689;;chr16:69600058..69600065,+!p9@NFAT5!0.35!1.25!NFAT5;;chr16:85936412..85936431,+!p2@IRF8!0.35!1.25!IRF8;;chr17:3571934..3571935,-!p3@TAX1BP3!0.35!1.25!TAX1BP3;;chr17:37934268..37934277,-!p10@IKZF3!0.35!1.25!IKZF3;;chr17:40540591..40540600,-!p3@STAT3!0.35!1.25!STAT3;;chr17:42287802..42287806,-!p25@UBTF!0.35!1.25!UBTF;;chr17:4981535..4981551,+!p2@ZFP3!0.35!1.25!ZFP3;;chr17:4981570..4981591,+!p3@ZFP3!0.35!1.25!ZFP3;;chr18:42260236..42260250,+!p7@SETBP1!0.35!1.25!SETBP1;;chr18:46477326..46477341,-!p2@SMAD7!0.35!1.25!SMAD7;;chr19:12444399..12444415,-!p5@ZNF563!0.35!1.25!ZNF563;;chr19:16435423..16435484,+!p5@KLF2!0.35!1.25!KLF2;;chr19:16435735..16435773,+!p4@KLF2!0.35!1.25!KLF2;;chr19:19729458..19729469,-!p2@PBX4!0.35!1.25!PBX4;;chr19:19976620..19976631,+!p4@ZNF253!0.35!1.25!ZNF253;;chr19:20748614..20748617,-!p5@ZNF737!0.35!1.25!ZNF737;;chr19:20959142..20959151,+!p2@ZNF66P!0.35!1.25!ZNF66P;;chr19:24270027..24270034,+!p8@ZNF254!0.35!1.25!ZNF254;;chr19:37096126..37096137,-!p4@ZNF529!0.35!1.25!ZNF529;;chr19:38085739..38085762,+!p3@ZNF540!0.35!1.25!ZNF540;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.34!88.70!TBX19;;chr10:31608127..31608156,+!p1@ZEB1!0.34!36.23!ZEB1;;chr10:45496346..45496409,+!p1@ZNF22!0.34!27.48!ZNF22;;chr19:58978418..58978456,+!p1@ZNF324!0.34!11.24!ZNF324;;chr3:52719888..52719908,-!p2@PBRM1!0.34!8.75!PBRM1;;chr2:157198916..157198978,-!p2@NR4A2!0.34!6.25!NR4A2;;chr19:53238260..53238312,-!p1@ZNF611!0.34!6.25!ZNF611;;chr19:58071201..58071238,-!p1@ZNF550!0.34!6.25!ZNF550;;chr21:34144115..34144138,-!p2@GCFC1!0.34!5.00!GCFC1;;chr19:52408227..52408243,-!p2@ZNF649!0.34!3.75!ZNF649;;chr1:211432887..211432903,+!p4@RCOR3!0.34!3.75!RCOR3;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.75!ZNF10;;chr19:19303047..19303079,+!p3@RFXANK!0.34!3.75!RFXANK;;chr21:44394742..44394756,+!p2@PKNOX1!0.34!3.75!PKNOX1;;chr5:132299008..132299026,-!p5@AFF4!0.34!3.75!AFF4;;chr14:64970401..64970423,-!p7@ZBTB25!0.34!2.50!ZBTB25;;chr14:64970451..64970473,-!p6@ZBTB25!0.34!2.50!ZBTB25;;chr20:48807615..48807644,+!p6@CEBPB!0.34!2.50!CEBPB;;chr2:208030299..208030332,-!p6@KLF7!0.34!2.50!KLF7;;chr20:46130619..46130664,+!p1@NCOA3!0.33!52.47!NCOA3;;chrX:153363125..153363182,-!p1@MECP2!0.33!51.22!MECP2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.33!17.49!ZCCHC6;;chr1:27022164..27022220,+!p2@ARID1A!0.33!13.74!ARID1A;;chr19:53898380..53898422,+!p1@ZNF765!0.33!11.24!ZNF765;;chr1:14026671..14026705,+!p2@PRDM2!0.33!11.24!PRDM2;;chr16:3285144..3285191,-!p1@ZNF200!0.33!8.75!ZNF200;;chr17:5095126..5095169,-!p1@ZNF594!0.33!7.50!ZNF594;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.33!7.50!ZNF816;;chr19:35225078..35225120,+!p2@ZNF181!0.33!3.75!ZNF181;;chr19:37997812..37997866,+!p1@ZNF793!0.33!2.50!ZNF793;;chr9:73028598..73028617,-!p5@KLF9!0.33!2.50!KLF9;;chr12:133707021..133707071,-!p2@ZNF891!0.33!2.50!ZNF891;;chr8:71316428..71316459,-!p2@NCOA2!0.33!2.50!NCOA2;;chr16:67596417..67596497,+!p1@CTCF!0.32!64.96!CTCF;;chrX:77041685..77041716,-!p1@ATRX!0.32!53.72!ATRX;;chr6:15246261..15246312,+!p1@JARID2!0.32!46.22!JARID2;;chr18:47814032..47814079,-!p1@CXXC1!0.32!34.98!CXXC1;;chr16:3355472..3355514,+!p1@ZNF75A!0.32!26.24!ZNF75A;;chr19:35168567..35168620,+!p1@ZNF302!0.32!21.24!ZNF302;;chr7:64254793..64254813,+!p1@ZNF138!0.32!21.24!ZNF138;;chr12:6798410..6798503,-!p1@ZNF384!0.32!19.99!ZNF384;;chr3:88108381..88108450,+!p1@ENST00000473136!0.32!19.99!ZNF654;;chr17:47439437..47439533,-!p1@ZNF652!0.32!14.99!ZNF652;;chr16:4322832..4322907,-!p1@TFAP4!0.32!13.74!TFAP4;;chr1:28995258..28995322,+!p1@GMEB1!0.32!13.74!GMEB1;;chr19:44716678..44716732,+!p1@ZNF227!0.32!12.49!ZNF227;;chr3:44519131..44519186,-!p1@ZNF445!0.32!9.99!ZNF445;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.32!9.99!ZNF10;;chr6:20403826..20403886,+!p2@E2F3!0.32!8.75!E2F3;;chr19:12251144..12251181,-!p2@ZNF20!0.32!7.50!ZNF20;;chr10:105110890..105110914,-!p2@PCGF6!0.32!6.25!PCGF6;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12182.12201-129C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:12201-129C5
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs12182!RDhi10017
+|library_id=CNhs12182!RDhi10017
+|library_id_phase_based=2:CNhs12182
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12201
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12201
 |name=CD8+ T Cells (pluriselect), donor090612, donation1
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12182,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007962!RNA-Seq@DRS012112
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 }}

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FF:12201-129C5: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0