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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0001134,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0000077,UBERON:0002368,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0007499,UBERON:0002050,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005291,UBERON:0003509,UBERON:0004573,UBERON:0002036,UBERON:0002385,UBERON:0009854,UBERON:0003929,UBERON:0001981,UBERON:0002049,UBERON:0005177,UBERON:0002365,UBERON:0000486,UBERON:0007500,UBERON:0003104,UBERON:0005057,UBERON:0005172,UBERON:0006925,UBERON:0004237,UBERON:0004695,UBERON:0000914,UBERON:0005256,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0002111,UBERON:0007798,UBERON:0009497,UBERON:0004185,UBERON:0005173,UBERON:0000015,UBERON:0009856,UBERON:0001015,UBERON:0002532,UBERON:0001555,UBERON:0004178,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0002417,UBERON:0007026,UBERON:0001041,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0000949,UBERON:0004572,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002405,UBERON:0002423,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0003081,UBERON:0001009,UBERON:0006235,UBERON:0006595,UBERON:0006603,UBERON:0003082,UBERON:0008835,UBERON:0004872,UBERON:0006965,UBERON:0003894,UBERON:0004161,UBERON:0008836,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
|DRA_sample_Accession=dog_CAGE@SAMD00053784
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000393,CL:0000181,CL:0000417,CL:0000668,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000134,CL:0000192,CL:0000211,CL:0000414,CL:0000412,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0000182,CL:0002539,CL:0000355,CL:0000223,CL:0000514
|accession_numbers=dog_CAGE;DRX057308;DRR063067;DRZ007594;DRZ007607
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0002368,UBERON:0002385,UBERON:0003509,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0002530,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0005173,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0002417,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0000949,UBERON:0004572,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000393,CL:0000181,CL:0000417,CL:0000668,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000412,CL:0000255,CL:0000182,CL:0000359,CL:0002539
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000016,FF:0000001,FF:0000017,FF:0000018
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|def=
|def=
|ffid_belonging_in_development=CL:0000355,CL:0000134,CL:0000222,CL:0000223,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
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|is_a=EFO:0002091;;FF:0000017;;FF:0000018
|is_a=EFO:0002091;;FF:0000017;;FF:0000018
|is_obsolete=
|is_obsolete=
|library_id=CNhs11308
|name=Canine hepatocytes, donor3
|name=Canine hepatocytes, donor3
|namespace=FANTOM5
|namespace=FANTOM5
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|rna_weight_ug=69.3
|rna_weight_ug=69.3
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=454830
|sample_cell_catalog=454830
|sample_cell_line=
|sample_cell_line=
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|sample_note=
|sample_note=
|sample_sex=male
|sample_sex=male
|sample_species=Dog (Canis lupus familaris)
|sample_species=Canis lupus familaris
|sample_strain=
|sample_strain=
|sample_tissue=liver
|sample_tissue=liver
|top_motifs=
|top_motifs=
|xref=
|xref=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:11407-118E3;search_select_hide=table117:FF:11407-118E3
}}
}}

Latest revision as of 09:38, 5 June 2020


Name:Canine hepatocytes, donor3
Species:Canis lupus familaris
Library ID:CNhs11308
Sample type:primary cells
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexmale
ageNA
cell typehepatocyte
cell lineNA
companyBD gentest
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
dog_CAGE  SAMD00053784
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11308 dog_CAGE DRX057308 DRR063067
Accession ID

Library idBAMCTSS
CNhs11308 DRZ007594 DRZ007607



FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0002368 (endocrine gland)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0005173 (abdominal segment element)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0000949 (endocrine system)
0004572 (arterial system)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000017 (canine aortic smooth muscle cell)
0000018 (canine hepatocyte)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)
CL:0000514 (smooth muscle myoblast)

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