FFCP PHASE1:Mm9::chr7:52409754..52409776,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68845 | |EntrezGene=68845 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CQJ2 | |UniProt=Q9CQJ2 | ||
|association_with_transcript=0bp_to_NM_029406,uc009gtw.1_5end | |association_with_transcript=0bp_to_NM_029406,uc009gtw.1_5end | ||
|cluster_id=chr7:52409754..52409776,+ | |||
|description=CAGE_peak_2_at_Pih1d1_5end | |description=CAGE_peak_2_at_Pih1d1_5end | ||
|id=chr7:52409754..52409776,+ | |id=chr7:52409754..52409776,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.49e-12!50;CL:0000221!5.70e-12!44;CL:0000133!5.70e-12!44;CL:0002319!5.72e-12!43;CL:0000117!6.58e-10!23;CL:0000337!6.58e-10!23;CL:0000393!6.37e-09!39;CL:0000211!6.37e-09!39;CL:0000540!7.06e-08!33;CL:0000047!7.06e-08!33;CL:0000031!7.06e-08!33;CL:0000404!7.06e-08!33;CL:0002321!6.35e-07!70;CL:0000220!6.35e-07!70 | |ontology_enrichment_celltype=CL:0000055!1.49e-12!50;CL:0000221!5.70e-12!44;CL:0000133!5.70e-12!44;CL:0002319!5.72e-12!43;CL:0000117!6.58e-10!23;CL:0000337!6.58e-10!23;CL:0000393!6.37e-09!39;CL:0000211!6.37e-09!39;CL:0000540!7.06e-08!33;CL:0000047!7.06e-08!33;CL:0000031!7.06e-08!33;CL:0000404!7.06e-08!33;CL:0002321!6.35e-07!70;CL:0000220!6.35e-07!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.70e-12,44;CL:0000133,5.70e-12,44;CL:0002319,5.72e-12,43;CL:0000117,6.58e-10,23;CL:0000337,6.58e-10,23;CL:0000393,6.37e-09,39;CL:0000211,6.37e-09,39;CL:0000540,7.06e-08,33;CL:0000047,7.06e-08,33;CL:0000031,7.06e-08,33;CL:0000404,7.06e-08,33;CL:0002321,6.25e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.85e-16!75;UBERON:0001016!5.85e-16!75;UBERON:0001017!6.73e-16!73;UBERON:0005743!6.73e-16!73;UBERON:0002020!5.79e-15!34;UBERON:0002346!2.08e-14!71;UBERON:0003075!2.08e-14!71;UBERON:0007284!2.08e-14!71;UBERON:0004121!9.30e-14!102;UBERON:0000924!9.30e-14!102;UBERON:0006601!9.30e-14!102;UBERON:0001049!9.65e-14!52;UBERON:0005068!9.65e-14!52;UBERON:0006241!9.65e-14!52;UBERON:0007135!9.65e-14!52;UBERON:0002791!2.08e-12!29;UBERON:0003528!2.08e-12!29;UBERON:0001893!2.08e-12!29;UBERON:0003056!2.75e-12!49;UBERON:0002780!4.01e-12!39;UBERON:0001890!4.01e-12!39;UBERON:0006240!4.01e-12!39;UBERON:0002616!6.38e-12!49;UBERON:0003080!7.03e-12!40;UBERON:0000955!1.19e-11!50;UBERON:0006238!1.19e-11!50;UBERON:0000033!1.86e-11!63;UBERON:0000025!3.14e-11!114;UBERON:0000956!6.20e-10!21;UBERON:0001869!6.20e-10!21;UBERON:0000203!6.20e-10!21;UBERON:0004111!2.41e-09!122;UBERON:0007811!7.18e-09!86;UBERON:0002619!2.62e-08!17;UBERON:0000153!2.66e-07!94;UBERON:0000119!8.32e-07!183 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.85e-16,75;UBERON:0001017,6.73e-16,73;UBERON:0002020,5.79e-15,34;UBERON:0000073,2.37e-14,54;UBERON:0010314,5.84e-14,92;UBERON:0002346,6.98e-14,64;UBERON:0003075,6.98e-14,64;UBERON:0007284,6.98e-14,64;UBERON:0001049,9.65e-14,52;UBERON:0005068,9.65e-14,52;UBERON:0006241,9.65e-14,52;UBERON:0007135,9.65e-14,52;UBERON:0004121,5.27e-13,95;UBERON:0000924,5.27e-13,95;UBERON:0006601,5.27e-13,95;UBERON:0003528,2.08e-12,29;UBERON:0002791,2.08e-12,29;UBERON:0001893,2.08e-12,29;UBERON:0003056,2.75e-12,49;UBERON:0002780,4.01e-12,39;UBERON:0001890,4.01e-12,39;UBERON:0006240,4.01e-12,39;UBERON:0002616,4.74e-12,46;UBERON:0003080,7.03e-12,40;UBERON:0000955,9.22e-12,47;UBERON:0006238,9.22e-12,47;UBERON:0010371,1.10e-11,73;UBERON:0000025,3.14e-11,114;UBERON:0000956,6.20e-10,21;UBERON:0001869,6.20e-10,21;UBERON:0000203,6.20e-10,21;UBERON:0004111,2.41e-09,122;UBERON:0002619,2.62e-08,17 | |||
|phase1_expression=6.40595388419176,2.44282785347553,1.36499771816861,1.51232105653415,1.50268718983904,4.19698179779725,3.03696432774183,6.06879620175408,1.267098499365,3.7450324211519,2.91070545983358,5.74359544766422,3.25281386869291,5.42006494997784,1.99865857089398,2.22722794128809,2.79824751251259,2.83915948822414,1.7824876368746,1.27316895539409,20.2403030559546,5.46100231604869,4.17919662622297,3.03985603307473,3.67054849707472,4.01962374880514,5.1691439539089,3.44753972297422,3.80046838912748,2.26827116783938,6.87364583031445,8.25539875497521,6.76571266343027,0,1.73310971850765,1.49611180822643,1.63335485009895,2.51118978442145,3.1253413780952,0,0.588231488031014,0.683045484958446,0.485510353031154,13.3450627054112,13.1790010585369,14.8672869250962,18.7773922643529,13.9536100083486,11.8630538676615,13.9989527333484,11.3389001516544,23.0004102983955,3.35565212115473,2.90144856804538,3.02484419228218,6.68874533693462,4.01146815914259,3.6097046459421,14.1621522601718,18.5146842745212,13.3104594736298,12.1984031544888,8.00365316500025,7.19919773825119,12.8552627133707,7.104801149461,8.98800331555214,10.7581125490035,7.25827286159344,8.77538599155989,10.0955981448663,12.5686433137674,13.4729809980484,10.534208732486,8.24271050756833,18.3843757322004,5.50579404996943,4.72443150915195,4.91540906419979,13.1886287730194,12.7167824607349,14.5855743755893,8.09630697104005,6.75315132038016,5.04234217663473,10.0173719061047,7.83044244395066,10.6247684120421,4.69502398665741,5.81901012822248,4.63783181922684,3.44169550792555,2.03991400112325,4.85732872474035,6.49776417447669,9.85659151614138,9.55022056895913,11.2484012901518,18.1850203222008,18.3736578745377,5.21120653173718,19.2489716121477,5.09610479413291,0,5.62876706629157,4.56047757855178,3.0331466700887,6.8510327831436,2.33044095282455,4.15637989381509,6.59244241711316,6.08930956624282,5.5347719341454,6.93324146542064,5.29149182110672,4.39833069653864,2.47194967734374,2.74738778147832,6.19227386364912,2.75003644910596,3.09178125844551,3.87900202508178,3.72783522436244,3.80615036115011,5.86450779077674,1.53274233125155,5.51149572727233,4.19931911695385,3.93917703926501,4.34392854273986,5.03250663100489,8.79580464790051,9.21268897019065,8.43861009190091,3.32460871295296,6.32740925964255,5.70300437561771,4.60305791257344,9.60346482047964,2.73574412652416,7.28674480591141,5.9774547152703,7.02242306240862,7.08312643827861,5.8511389270142,6.79002717509704,5.528401749024,3.88055056108524,4.74249584452253,4.16033376369202,3.69497360744293,7.01426343768239,3.33656699070717,2.43776516565517,2.67516777330327,3.58261680273288,4.21327912387941,5.1469581422943,1.98914449576915,7.24940203874257,4.92504725960302,3.96136535214233,5.44512891845984,7.28027657465394,5.39934895105824,6.0458825635106,2.41446061259657,4.55384835231961,6.08871444679878,6.23836363500562,4.2155780963845,3.94739966048397,5.48875288227627,4.83143107537338,5.04695876553905,13.1717903845484,0.660837565967596,1.32225283331772,6.61193576659225,4.87697010906921,2.31961430379768,3.83198696784351,3.55804870151792,2.85338439168839,1.42358718463353,3.62337700392824,3.2673577144035,4.37704238490532,2.9244613067868,0.898819408654221,1.51296634912286,1.7922714592893,11.0007382552787,6.740662243974,7.88954149711563,4.48032921259691,6.20647958936402,5.19005067188357,5.56481526693464,3.98547399544926,4.23896565171712,4.19550357334122,3.85388415213294,2.50267658574141,2.16214894624523,2.24862112384854,3.85434230638156,1.92941727801933,3.56476192493988,3.74004978686054,4.37765112292595,6.31491250332587,5.75072826109418,5.20997326735905,6.24075346229121,6.81962970457202,5.9201146462231,6.75420929908714,1.66277871149944,5.11626811780309,3.91115943460862,5.60158783058121,3.98973422090454,4.85768146581266,4.76087281772027,6.04914308359176,4.25614889086716,4.65075848262427,4.62418829106713,6.06294264448231,6.56202931090403,3.61622646453779,9.04747703635634,2.17562273527484,1.47529281905711,4.41498794087572,4.49541651965817,3.6335622843583,3.27869890753351,6.05930225290495,4.10160685241134,8.19921363022941,3.23135096599198,5.9742199488138,6.68396022247182,2.83076530788832,2.83367491172426,3.79932615284705,6.32460444714438,4.17717711348349,3.69044221541498,6.58842733568844,5.04949573996086,4.28922319728592,1.32745138339963,4.85561272309963,5.74414758233027,3.58349651536206,6.496641643377,2.15204603560749,2.84271122485043,6.18007340111759,4.27796854061666,1.8962205476149,0,1.03135543248187,1.36175842301515,7.56256594931503,8.27895576209629,7.07312215604255,7.27094957933322,5.17269571046005,7.56925494769756,4.26250928760439,2.58138878870081,2.1183207086382,1.7642271844397,2.96795255294664,4.03661066739764,3.43783672090488,4.8942661041286,3.77524069413641,1.7488850197791,2.78137953015765,3.07567585436135,4.95328483111734,3.1483069652851,3.20226376907975,1.77702496037333,3.43167259809784,5.43930975980337,4.19854356970974,2.76399947608848,3.81868247206045,6.48488786841327,3.25311147402958,3.24016022465404,4.18176592028937,2.62035076495413,4.31565908431426,4.95920734352016,4.18809507174447,3.24037433229482,3.10669656543463,253.098129469201,4.03694674318743,3.30916980914195,4.4723773319131,5.03723311563151,4.89972763923257,4.5769323071844,5.7289929331338,5.03324853243412,55.5643477899814,109.451402377989,4.74016680942267,9.73081033392788,7.18976700153791,7.7952493786677,3.22248052201467,2.58285761215644,3.96644983415897,3.69223817936443,4.84638959751109,5.41068327250499,5.74709255279991,4.28814675254911,3.07877893249054,4.20756847853648,2.94749498699775,3.32978930061097,1.70456327558004,1.67884616364078,2.89784391048286,3.56596703357246,2.56412273974171,3.85863082342319,1.50471631210609,10.1655331671072,6.44455331110048,10.3121192419091,6.70227411140382,10.2762377965596,9.82012066606611,12.8254275044043,7.65546045481175,10.8754178156209,7.24864436452548,7.88783841639743,6.3843979744165,6.4878770186571,4.132814190161,5.24032906569956,6.61836630420051,3.33370091702423,3.29656091582231,3.85103051510178,3.79045817645696,3.8021894983536,4.14977951049368,2.99652823903624,3.39333307745807,2.81433797882505,2.38146845641537,2.31768651889711,3.47236596834669,4.12085900803307,3.97437084362873,5.14303878578123,4.79184676630211,3.09967046931517,4.21504608233753,3.29382831453657,4.06150117880047,3.29270351170991,3.41990624869196,3.66671107383827,3.36685362994643,4.62676570684279,2.85662998889134,2.45538625901814,2.78886314134739,4.24394544158511,5.49583271463481,4.67863216890817,4.94203424311086,5.54736162999646,4.19123696327079,4.86922454802885 | |phase1_expression=6.40595388419176,2.44282785347553,1.36499771816861,1.51232105653415,1.50268718983904,4.19698179779725,3.03696432774183,6.06879620175408,1.267098499365,3.7450324211519,2.91070545983358,5.74359544766422,3.25281386869291,5.42006494997784,1.99865857089398,2.22722794128809,2.79824751251259,2.83915948822414,1.7824876368746,1.27316895539409,20.2403030559546,5.46100231604869,4.17919662622297,3.03985603307473,3.67054849707472,4.01962374880514,5.1691439539089,3.44753972297422,3.80046838912748,2.26827116783938,6.87364583031445,8.25539875497521,6.76571266343027,0,1.73310971850765,1.49611180822643,1.63335485009895,2.51118978442145,3.1253413780952,0,0.588231488031014,0.683045484958446,0.485510353031154,13.3450627054112,13.1790010585369,14.8672869250962,18.7773922643529,13.9536100083486,11.8630538676615,13.9989527333484,11.3389001516544,23.0004102983955,3.35565212115473,2.90144856804538,3.02484419228218,6.68874533693462,4.01146815914259,3.6097046459421,14.1621522601718,18.5146842745212,13.3104594736298,12.1984031544888,8.00365316500025,7.19919773825119,12.8552627133707,7.104801149461,8.98800331555214,10.7581125490035,7.25827286159344,8.77538599155989,10.0955981448663,12.5686433137674,13.4729809980484,10.534208732486,8.24271050756833,18.3843757322004,5.50579404996943,4.72443150915195,4.91540906419979,13.1886287730194,12.7167824607349,14.5855743755893,8.09630697104005,6.75315132038016,5.04234217663473,10.0173719061047,7.83044244395066,10.6247684120421,4.69502398665741,5.81901012822248,4.63783181922684,3.44169550792555,2.03991400112325,4.85732872474035,6.49776417447669,9.85659151614138,9.55022056895913,11.2484012901518,18.1850203222008,18.3736578745377,5.21120653173718,19.2489716121477,5.09610479413291,0,5.62876706629157,4.56047757855178,3.0331466700887,6.8510327831436,2.33044095282455,4.15637989381509,6.59244241711316,6.08930956624282,5.5347719341454,6.93324146542064,5.29149182110672,4.39833069653864,2.47194967734374,2.74738778147832,6.19227386364912,2.75003644910596,3.09178125844551,3.87900202508178,3.72783522436244,3.80615036115011,5.86450779077674,1.53274233125155,5.51149572727233,4.19931911695385,3.93917703926501,4.34392854273986,5.03250663100489,8.79580464790051,9.21268897019065,8.43861009190091,3.32460871295296,6.32740925964255,5.70300437561771,4.60305791257344,9.60346482047964,2.73574412652416,7.28674480591141,5.9774547152703,7.02242306240862,7.08312643827861,5.8511389270142,6.79002717509704,5.528401749024,3.88055056108524,4.74249584452253,4.16033376369202,3.69497360744293,7.01426343768239,3.33656699070717,2.43776516565517,2.67516777330327,3.58261680273288,4.21327912387941,5.1469581422943,1.98914449576915,7.24940203874257,4.92504725960302,3.96136535214233,5.44512891845984,7.28027657465394,5.39934895105824,6.0458825635106,2.41446061259657,4.55384835231961,6.08871444679878,6.23836363500562,4.2155780963845,3.94739966048397,5.48875288227627,4.83143107537338,5.04695876553905,13.1717903845484,0.660837565967596,1.32225283331772,6.61193576659225,4.87697010906921,2.31961430379768,3.83198696784351,3.55804870151792,2.85338439168839,1.42358718463353,3.62337700392824,3.2673577144035,4.37704238490532,2.9244613067868,0.898819408654221,1.51296634912286,1.7922714592893,11.0007382552787,6.740662243974,7.88954149711563,4.48032921259691,6.20647958936402,5.19005067188357,5.56481526693464,3.98547399544926,4.23896565171712,4.19550357334122,3.85388415213294,2.50267658574141,2.16214894624523,2.24862112384854,3.85434230638156,1.92941727801933,3.56476192493988,3.74004978686054,4.37765112292595,6.31491250332587,5.75072826109418,5.20997326735905,6.24075346229121,6.81962970457202,5.9201146462231,6.75420929908714,1.66277871149944,5.11626811780309,3.91115943460862,5.60158783058121,3.98973422090454,4.85768146581266,4.76087281772027,6.04914308359176,4.25614889086716,4.65075848262427,4.62418829106713,6.06294264448231,6.56202931090403,3.61622646453779,9.04747703635634,2.17562273527484,1.47529281905711,4.41498794087572,4.49541651965817,3.6335622843583,3.27869890753351,6.05930225290495,4.10160685241134,8.19921363022941,3.23135096599198,5.9742199488138,6.68396022247182,2.83076530788832,2.83367491172426,3.79932615284705,6.32460444714438,4.17717711348349,3.69044221541498,6.58842733568844,5.04949573996086,4.28922319728592,1.32745138339963,4.85561272309963,5.74414758233027,3.58349651536206,6.496641643377,2.15204603560749,2.84271122485043,6.18007340111759,4.27796854061666,1.8962205476149,0,1.03135543248187,1.36175842301515,7.56256594931503,8.27895576209629,7.07312215604255,7.27094957933322,5.17269571046005,7.56925494769756,4.26250928760439,2.58138878870081,2.1183207086382,1.7642271844397,2.96795255294664,4.03661066739764,3.43783672090488,4.8942661041286,3.77524069413641,1.7488850197791,2.78137953015765,3.07567585436135,4.95328483111734,3.1483069652851,3.20226376907975,1.77702496037333,3.43167259809784,5.43930975980337,4.19854356970974,2.76399947608848,3.81868247206045,6.48488786841327,3.25311147402958,3.24016022465404,4.18176592028937,2.62035076495413,4.31565908431426,4.95920734352016,4.18809507174447,3.24037433229482,3.10669656543463,253.098129469201,4.03694674318743,3.30916980914195,4.4723773319131,5.03723311563151,4.89972763923257,4.5769323071844,5.7289929331338,5.03324853243412,55.5643477899814,109.451402377989,4.74016680942267,9.73081033392788,7.18976700153791,7.7952493786677,3.22248052201467,2.58285761215644,3.96644983415897,3.69223817936443,4.84638959751109,5.41068327250499,5.74709255279991,4.28814675254911,3.07877893249054,4.20756847853648,2.94749498699775,3.32978930061097,1.70456327558004,1.67884616364078,2.89784391048286,3.56596703357246,2.56412273974171,3.85863082342319,1.50471631210609,10.1655331671072,6.44455331110048,10.3121192419091,6.70227411140382,10.2762377965596,9.82012066606611,12.8254275044043,7.65546045481175,10.8754178156209,7.24864436452548,7.88783841639743,6.3843979744165,6.4878770186571,4.132814190161,5.24032906569956,6.61836630420051,3.33370091702423,3.29656091582231,3.85103051510178,3.79045817645696,3.8021894983536,4.14977951049368,2.99652823903624,3.39333307745807,2.81433797882505,2.38146845641537,2.31768651889711,3.47236596834669,4.12085900803307,3.97437084362873,5.14303878578123,4.79184676630211,3.09967046931517,4.21504608233753,3.29382831453657,4.06150117880047,3.29270351170991,3.41990624869196,3.66671107383827,3.36685362994643,4.62676570684279,2.85662998889134,2.45538625901814,2.78886314134739,4.24394544158511,5.49583271463481,4.67863216890817,4.94203424311086,5.54736162999646,4.19123696327079,4.86922454802885 | ||
|short_description=p2@Pih1d1 | |short_description=p2@Pih1d1 | ||
}} | }} |
Latest revision as of 20:48, 26 September 2015
Short description: | p2@Pih1d1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pih1d1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_NM_029406, uc009gtw.1_5end |
EntrezGene: | Pih1d1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.70e-12 | 44 |
neurectodermal cell | 5.70e-12 | 44 |
neural cell | 5.72e-12 | 43 |
CNS neuron (sensu Vertebrata) | 6.58e-10 | 23 |
neuroblast (sensu Vertebrata) | 6.58e-10 | 23 |
electrically responsive cell | 6.37e-09 | 39 |
electrically active cell | 6.37e-09 | 39 |
neuron | 7.06e-08 | 33 |
neuronal stem cell | 7.06e-08 | 33 |
neuroblast | 7.06e-08 | 33 |
electrically signaling cell | 7.06e-08 | 33 |
embryonic cell | 6.25e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.85e-16 | 75 |
central nervous system | 6.73e-16 | 73 |
gray matter | 5.79e-15 | 34 |
regional part of nervous system | 2.37e-14 | 54 |
structure with developmental contribution from neural crest | 5.84e-14 | 92 |
neurectoderm | 6.98e-14 | 64 |
neural plate | 6.98e-14 | 64 |
presumptive neural plate | 6.98e-14 | 64 |
neural tube | 9.65e-14 | 52 |
neural rod | 9.65e-14 | 52 |
future spinal cord | 9.65e-14 | 52 |
neural keel | 9.65e-14 | 52 |
ectoderm-derived structure | 5.27e-13 | 95 |
ectoderm | 5.27e-13 | 95 |
presumptive ectoderm | 5.27e-13 | 95 |
brain grey matter | 2.08e-12 | 29 |
regional part of telencephalon | 2.08e-12 | 29 |
telencephalon | 2.08e-12 | 29 |
pre-chordal neural plate | 2.75e-12 | 49 |
regional part of forebrain | 4.01e-12 | 39 |
forebrain | 4.01e-12 | 39 |
future forebrain | 4.01e-12 | 39 |
regional part of brain | 4.74e-12 | 46 |
anterior neural tube | 7.03e-12 | 40 |
brain | 9.22e-12 | 47 |
future brain | 9.22e-12 | 47 |
ecto-epithelium | 1.10e-11 | 73 |
tube | 3.14e-11 | 114 |
cerebral cortex | 6.20e-10 | 21 |
cerebral hemisphere | 6.20e-10 | 21 |
pallium | 6.20e-10 | 21 |
anatomical conduit | 2.41e-09 | 122 |
regional part of cerebral cortex | 2.62e-08 | 17 |