FFCP PHASE1:Mm9::chr2:119625278..119625308,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22174 | |EntrezGene=22174 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2326 | |||
|TSSclassifier=NA | |||
|UniProt=P55144 | |UniProt=P55144 | ||
|association_with_transcript=28bp_to_ENSMUST00000028763,NM_019392,uc008luq.1_5end | |association_with_transcript=28bp_to_ENSMUST00000028763,NM_019392,uc008luq.1_5end | ||
|cluster_id=chr2:119625278..119625308,+ | |||
|description=CAGE_peak_1_at_Tyro3_5end | |description=CAGE_peak_1_at_Tyro3_5end | ||
|id=chr2:119625278..119625308,+ | |id=chr2:119625278..119625308,+ | ||
|ontology_enrichment_celltype=CL:0000221!1.00e-10!44;CL:0000133!1.00e-10!44;CL:0002319!1.71e-10!43;CL:0000055!1.66e-09!50;CL:0000540!3.09e-09!33;CL:0000047!3.09e-09!33;CL:0000031!3.09e-09!33;CL:0000404!3.09e-09!33;CL:0000393!6.73e-09!39;CL:0000211!6.73e-09!39 | |ontology_enrichment_celltype=CL:0000221!1.00e-10!44;CL:0000133!1.00e-10!44;CL:0002319!1.71e-10!43;CL:0000055!1.66e-09!50;CL:0000540!3.09e-09!33;CL:0000047!3.09e-09!33;CL:0000031!3.09e-09!33;CL:0000404!3.09e-09!33;CL:0000393!6.73e-09!39;CL:0000211!6.73e-09!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.10e-11,44;CL:0000133,4.10e-11,44;CL:0002319,7.16e-11,43;CL:0000540,1.47e-09,33;CL:0000047,1.47e-09,33;CL:0000031,1.47e-09,33;CL:0000404,1.47e-09,33;CL:0000393,4.74e-09,39;CL:0000211,4.74e-09,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.65e-23!102;UBERON:0000924!5.65e-23!102;UBERON:0006601!5.65e-23!102;UBERON:0000073!3.64e-22!75;UBERON:0001016!3.64e-22!75;UBERON:0001017!4.48e-22!73;UBERON:0005743!4.48e-22!73;UBERON:0001049!8.65e-15!52;UBERON:0005068!8.65e-15!52;UBERON:0006241!8.65e-15!52;UBERON:0007135!8.65e-15!52;UBERON:0000955!2.09e-14!50;UBERON:0006238!2.09e-14!50;UBERON:0002346!2.48e-14!71;UBERON:0003075!2.48e-14!71;UBERON:0007284!2.48e-14!71;UBERON:0002616!7.45e-14!49;UBERON:0000033!1.56e-13!63;UBERON:0002020!7.83e-13!34;UBERON:0002791!5.10e-11!29;UBERON:0003528!5.10e-11!29;UBERON:0001893!5.10e-11!29;UBERON:0003080!2.01e-10!40;UBERON:0002780!5.12e-10!39;UBERON:0001890!5.12e-10!39;UBERON:0006240!5.12e-10!39;UBERON:0003056!7.16e-10!49;UBERON:0000956!8.45e-09!21;UBERON:0001869!8.45e-09!21;UBERON:0000203!8.45e-09!21;UBERON:0002619!8.52e-09!17;UBERON:0000153!5.98e-08!94;UBERON:0002021!1.06e-07!10;UBERON:0000411!1.06e-07!10;UBERON:0001950!1.06e-07!10;UBERON:0000468!6.45e-07!333;UBERON:0007811!6.97e-07!86 | |ontology_enrichment_uberon=UBERON:0004121!5.65e-23!102;UBERON:0000924!5.65e-23!102;UBERON:0006601!5.65e-23!102;UBERON:0000073!3.64e-22!75;UBERON:0001016!3.64e-22!75;UBERON:0001017!4.48e-22!73;UBERON:0005743!4.48e-22!73;UBERON:0001049!8.65e-15!52;UBERON:0005068!8.65e-15!52;UBERON:0006241!8.65e-15!52;UBERON:0007135!8.65e-15!52;UBERON:0000955!2.09e-14!50;UBERON:0006238!2.09e-14!50;UBERON:0002346!2.48e-14!71;UBERON:0003075!2.48e-14!71;UBERON:0007284!2.48e-14!71;UBERON:0002616!7.45e-14!49;UBERON:0000033!1.56e-13!63;UBERON:0002020!7.83e-13!34;UBERON:0002791!5.10e-11!29;UBERON:0003528!5.10e-11!29;UBERON:0001893!5.10e-11!29;UBERON:0003080!2.01e-10!40;UBERON:0002780!5.12e-10!39;UBERON:0001890!5.12e-10!39;UBERON:0006240!5.12e-10!39;UBERON:0003056!7.16e-10!49;UBERON:0000956!8.45e-09!21;UBERON:0001869!8.45e-09!21;UBERON:0000203!8.45e-09!21;UBERON:0002619!8.52e-09!17;UBERON:0000153!5.98e-08!94;UBERON:0002021!1.06e-07!10;UBERON:0000411!1.06e-07!10;UBERON:0001950!1.06e-07!10;UBERON:0000468!6.45e-07!333;UBERON:0007811!6.97e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.26e-24,95;UBERON:0000924,1.26e-24,95;UBERON:0006601,1.26e-24,95;UBERON:0001016,1.00e-22,75;UBERON:0001017,1.25e-22,73;UBERON:0010371,5.28e-18,73;UBERON:0000073,4.50e-16,54;UBERON:0002346,1.61e-15,64;UBERON:0003075,1.61e-15,64;UBERON:0007284,1.61e-15,64;UBERON:0001049,4.65e-15,52;UBERON:0005068,4.65e-15,52;UBERON:0006241,4.65e-15,52;UBERON:0007135,4.65e-15,52;UBERON:0002020,2.62e-13,34;UBERON:0000955,3.69e-13,47;UBERON:0006238,3.69e-13,47;UBERON:0002616,1.33e-12,46;UBERON:0003528,2.03e-11,29;UBERON:0002791,2.03e-11,29;UBERON:0001893,2.03e-11,29;UBERON:0003080,1.57e-10,40;UBERON:0002780,4.12e-10,39;UBERON:0001890,4.12e-10,39;UBERON:0006240,4.12e-10,39;UBERON:0003056,5.49e-10,49;UBERON:0010314,1.07e-09,92;UBERON:0000956,4.18e-09,21;UBERON:0001869,4.18e-09,21;UBERON:0000203,4.18e-09,21;UBERON:0002619,4.21e-09,17;UBERON:0002021,5.84e-08,10;UBERON:0000411,5.84e-08,10;UBERON:0001950,5.84e-08,10 | |||
|phase1_expression=2.24208385946712,0,0,0.60492842261366,0,0.503637815735669,0.934450562382103,1.16210991097419,0.84473233291,3.04283884218592,0.68487187290202,0.957265907944037,0.171200729931206,0.961624426608971,0,0.202475267389826,0,0,0,0,8.58937230525805,0.695036658406197,0,0.799962113967033,0.91763712426868,0,0,0.430942465371778,0.950117097281869,0.252030129759931,0,0,0,0,0.866554859253824,1.32987716286794,1.22501613757421,0,0,0,0,0,0,2.14024590558481,2.93993100536592,0.734187008646726,1.56478268869608,3.05235218932625,5.71184075109627,5.8328969722285,1.39986421625363,4.31257693094915,0.167782606057736,0,0,3.08711323243136,2.0057340795713,2.57836046138721,4.45096213891115,6.34789175126439,1.90149421051854,1.69422266034566,4.4464739805557,2.6996991518442,0.988866362566974,2.1314403448383,3.29560121570245,6.91592949578798,1.65903379693564,2.16009501330705,2.52389953621658,8.85518051651791,8.83474163806454,2.69479758272899,2.97120960156533,2.75765635983006,6.60695285996332,8.55505165170758,7.68032666281217,3.69281605644543,3.65950574409639,1.04182674111352,11.4465029590566,6.19038871034848,6.72312290217964,3.53554302568401,5.26775218956681,4.28718725398191,2.42323818666189,2.49386148352392,0.289864488701678,0,0,0,0,0,2.10666630197628,1.70430322578058,2.33807404142582,2.12003744706204,3.80277233397037,1.28326477414318,2.54805239706646,7.11066703153331,4.11332977921307,3.54703811665138,2.52762222507392,1.48439043634778,0,0.29688427812965,2.08182392119363,1.21786191324856,2.53677046981664,2.26083960828934,3.05730638552832,1.75933227861546,1.97755974187499,0,0,1.29413479957927,0.662524555381181,0,0,15.517382241612,24.0863712835473,0.510914110417183,0,0,0,6.5907881338122,34.312545211397,6.40837195775608,25.5521750682646,31.9644321662913,9.55825004973976,16.710850095979,2.85150218780886,0.373220911830279,0.758168275301024,1.05220927943237,1.82168620147785,3.90833577536904,1.80062129805349,2.10986744970001,2.24520447199382,1.40925092313335,2.62364828767241,2.84573707812917,4.095791865724,3.21480336285293,2.63926686245923,3.06874025398605,5.00485048606076,7.3132954969655,5.35033554660653,3.98068533636986,0,0,0,0.414251545071004,2.11073453982987,1.08037236876609,0.946978942340841,0.983821158737019,1.23413690309903,0.697601834251224,1.07309360559848,0.934122738937356,1.6455984991348,1.14917224855367,0.324275238183423,0.730999937126662,0.878200461164203,0.671032093801859,13.6688466566683,2.6755199218614,1.32167513193519,1.05780226665418,1.49301775374664,2.55460339046482,2.44848176511977,1.4117846723634,1.33426826306922,3.80451252225118,4.74529061544512,1.64698954724011,0.754005626400808,1.39269530428806,2.9244613067868,5.39291645192533,1.72910439899755,1.99141273254367,1.32767530667157,2.05647322697512,2.25415471346161,0.814605311381257,0.969762435838129,1.82353131714828,2.40298841072178,0.590440591918409,0.31399745568275,0.246794327843601,0,0.333690211432188,0.196558995113203,0,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0.823684239564244,1.43768206527355,0.744281895337007,0.936113019343682,0,0,0,1.47802552133284,2.27389694124582,1.62964976442026,1.52770577197669,2.81628297946203,0.670025029767263,2.14239276797412,2.53673742215138,1.7339865851681,1.55025282754142,2.23236676120482,0.983179888294428,1.20879487306127,2.31438493730419,0,0,4.42587845717133,3.58717770196152,8.50918126935297,7.14991288212439,1.47541450839008,0.252470927204373,3.47059041357882,5.46614242015294,7.32439552291516,5.9742199488138,5.56996685205985,7.07691326972081,5.66734982344852,7.59865230569411,7.51046778098395,11.8888887076069,2.2710413633323,4.45164009168138,6.18970445543589,2.3095817216155,1.32745138339963,1.45668381692989,0.604647113929502,0.377210159511796,1.18120757152309,0.614870295887855,2.06742634534577,0.363533729477506,0.712994756769443,1.58018378967908,3.16255825724996,2.06271086496374,0.340439605753788,2.88097750450096,2.71653235943784,1.71469628025274,1.41872186913819,0.891844088010353,1.31639216481697,2.43571959291679,2.3467170806371,4.44847348814022,0.882113592219848,2.96795255294664,6.45857706783622,4.22190474497091,5.61050016814741,3.93938159388147,2.04036585640896,7.6024373824309,0,2.68302928352189,1.11116716421827,0.188368457004691,0,0.686334519619568,0,0.139951452323658,0.276399947608848,6.68269432610579,4.4287039101359,2.64315307264903,4.42821897369385,5.85447228840512,4.80397640241591,5.25970950900801,6.52962300230154,7.59092231753686,0.90730481304255,0,3.38215763210514,13.3069725979141,11.913011312911,16.9172533859321,13.949260935595,16.3887441726055,24.0582339223796,32.2906874412996,22.3350403626764,5.55643477899814,6.33666013767304,1.26404448251271,2.02725215290164,0.821687657318618,0.649604114888975,0.179026695667481,0.79472541912506,0.600977247599844,0.590758108698309,0.302899349844443,0.304827226619999,0.403304740547362,0.292373642219257,0.288635524920988,0.467507608726276,6.12172035761071,0,1.16628013592318,0.503653849092235,5.40930863290133,5.2551093126331,2.74727436400898,7.93163002592544,0.501572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| ||
|short_description=p1@Tyro3 | |short_description=p1@Tyro3 | ||
}} | }} |
Latest revision as of 14:17, 25 September 2015
Short description: | p1@Tyro3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tyro3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2326 |
Association with transcript: | 28bp_to_ENSMUST00000028763, NM_019392, uc008luq.1_5end |
EntrezGene: | Tyro3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.10e-11 | 44 |
neurectodermal cell | 4.10e-11 | 44 |
neural cell | 7.16e-11 | 43 |
neuron | 1.47e-09 | 33 |
neuronal stem cell | 1.47e-09 | 33 |
neuroblast | 1.47e-09 | 33 |
electrically signaling cell | 1.47e-09 | 33 |
electrically responsive cell | 4.74e-09 | 39 |
electrically active cell | 4.74e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.26e-24 | 95 |
ectoderm | 1.26e-24 | 95 |
presumptive ectoderm | 1.26e-24 | 95 |
nervous system | 1.00e-22 | 75 |
central nervous system | 1.25e-22 | 73 |
ecto-epithelium | 5.28e-18 | 73 |
regional part of nervous system | 4.50e-16 | 54 |
neurectoderm | 1.61e-15 | 64 |
neural plate | 1.61e-15 | 64 |
presumptive neural plate | 1.61e-15 | 64 |
neural tube | 4.65e-15 | 52 |
neural rod | 4.65e-15 | 52 |
future spinal cord | 4.65e-15 | 52 |
neural keel | 4.65e-15 | 52 |
gray matter | 2.62e-13 | 34 |
brain | 3.69e-13 | 47 |
future brain | 3.69e-13 | 47 |
regional part of brain | 1.33e-12 | 46 |
brain grey matter | 2.03e-11 | 29 |
regional part of telencephalon | 2.03e-11 | 29 |
telencephalon | 2.03e-11 | 29 |
anterior neural tube | 1.57e-10 | 40 |
regional part of forebrain | 4.12e-10 | 39 |
forebrain | 4.12e-10 | 39 |
future forebrain | 4.12e-10 | 39 |
pre-chordal neural plate | 5.49e-10 | 49 |
structure with developmental contribution from neural crest | 1.07e-09 | 92 |
cerebral cortex | 4.18e-09 | 21 |
cerebral hemisphere | 4.18e-09 | 21 |
pallium | 4.18e-09 | 21 |
regional part of cerebral cortex | 4.21e-09 | 17 |
occipital lobe | 5.84e-08 | 10 |
visual cortex | 5.84e-08 | 10 |
neocortex | 5.84e-08 | 10 |