FFCP PHASE1:Hg19::chr10:70992740..70992781,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80201 | |EntrezGene=80201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23302 | |HGNC=23302 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010qje.1_5end | |association_with_transcript=0bp_to_uc010qje.1_5end | ||
|cluster_id=chr10:70992740..70992781,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_HKDC1_5end | |description=CAGE_peak_4_at_HKDC1_5end | ||
|id=chr10:70992740..70992781,+ | |id=chr10:70992740..70992781,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.86e-19!18;CL:0000789!1.86e-19!18;CL:0002420!1.86e-19!18;CL:0002419!1.86e-19!18;CL:0000790!1.86e-19!18;CL:0000084!7.90e-19!25;CL:0000827!7.90e-19!25;CL:0000625!4.02e-12!11;CL:0000838!3.92e-11!52;CL:0000542!8.51e-11!53;CL:0000051!8.51e-11!53;CL:0000624!1.25e-10!6;CL:0002087!9.88e-07!119 | |ontology_enrichment_celltype=CL:0000791!1.86e-19!18;CL:0000789!1.86e-19!18;CL:0002420!1.86e-19!18;CL:0002419!1.86e-19!18;CL:0000790!1.86e-19!18;CL:0000084!7.90e-19!25;CL:0000827!7.90e-19!25;CL:0000625!4.02e-12!11;CL:0000838!3.92e-11!52;CL:0000542!8.51e-11!53;CL:0000051!8.51e-11!53;CL:0000624!1.25e-10!6;CL:0002087!9.88e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.76e-39;18!CL:0000789;3.76e-39;18!CL:0002419;3.76e-39;18!CL:0000084;1.21e-35;25!CL:0000625;7.51e-24;11!CL:0000624;8.45e-20;6!CL:0000898;3.10e-11;3!CL:0000542;2.36e-09;53!CL:0000815;2.67e-08;2!CL:0000792;2.67e-08;2!CL:0002677;2.67e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.04e-39,18;CL:0000789,2.04e-39,18;CL:0002420,2.04e-39,18;CL:0002419,2.04e-39,18;CL:0000790,2.04e-39,18;CL:0000084,7.36e-36,25;CL:0000827,7.36e-36,25;CL:0000625,6.13e-24,11;CL:0000624,5.20e-20,6;CL:0000838,6.85e-17,52;CL:0000542,1.73e-16,53;CL:0000051,1.73e-16,53;CL:0000898,3.11e-11,3;CL:0000815,2.45e-08,2;CL:0000792,2.45e-08,2;CL:0002677,2.45e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.76e-39;18!CL:0000051;2.36e-09;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!9.40e-12!15;UBERON:0000179!9.40e-12!15;UBERON:0000463!9.40e-12!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.52e-16;15!UBERON:0000179;1.52e-16;15!UBERON:0000463;1.52e-16;15!UBERON:0002390;1.36e-11;32!UBERON:0002370;1.97e-08;2!UBERON:0005058;1.97e-08;2!UBERON:0009113;1.97e-08;2!UBERON:0004177;7.41e-07;5!UBERON:0005057;7.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.60e-16,15;UBERON:0000179,1.60e-16,15;UBERON:0000463,1.60e-16,15;UBERON:0002370,1.40e-08,4;UBERON:0005058,1.40e-08,4;UBERON:0009113,1.40e-08,4;UBERON:0003295,1.40e-08,4;UBERON:0005562,1.40e-08,4;UBERON:0004177,5.00e-08,7;UBERON:0005057,5.00e-08,7 | |||
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| ||
|short_description=p4@HKDC1 | |short_description=p4@HKDC1 | ||
}} | }} |
Latest revision as of 00:53, 19 September 2015
Short description: | p4@HKDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HKDC1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_uc010qje.1_5end |
EntrezGene: | HKDC1 |
HGNC: | 23302 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.04e-39 | 18 |
alpha-beta T cell | 2.04e-39 | 18 |
immature T cell | 2.04e-39 | 18 |
mature T cell | 2.04e-39 | 18 |
immature alpha-beta T cell | 2.04e-39 | 18 |
T cell | 7.36e-36 | 25 |
pro-T cell | 7.36e-36 | 25 |
CD8-positive, alpha-beta T cell | 6.13e-24 | 11 |
CD4-positive, alpha-beta T cell | 5.20e-20 | 6 |
lymphoid lineage restricted progenitor cell | 6.85e-17 | 52 |
lymphocyte | 1.73e-16 | 53 |
common lymphoid progenitor | 1.73e-16 | 53 |
naive T cell | 3.11e-11 | 3 |
regulatory T cell | 2.45e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.45e-08 | 2 |
naive regulatory T cell | 2.45e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.60e-16 | 15 |
haemolymphatic fluid | 1.60e-16 | 15 |
organism substance | 1.60e-16 | 15 |
thymus | 1.40e-08 | 4 |
hemolymphoid system gland | 1.40e-08 | 4 |
thymic region | 1.40e-08 | 4 |
pharyngeal gland | 1.40e-08 | 4 |
thymus primordium | 1.40e-08 | 4 |
hemopoietic organ | 5.00e-08 | 7 |
immune organ | 5.00e-08 | 7 |