FFCP PHASE1:Mm9::chr7:107756350..107756368,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19346 | |EntrezGene=19346 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P35279 | |UniProt=P35279 | ||
|association_with_transcript=146bp_to_ENSMUST00000098252_5end | |association_with_transcript=146bp_to_ENSMUST00000098252_5end | ||
|cluster_id=chr7:107756350..107756368,+ | |||
|description=CAGE_peak_3_at_Rab6a_5end | |description=CAGE_peak_3_at_Rab6a_5end | ||
|id=chr7:107756350..107756368,+ | |id=chr7:107756350..107756368,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.05e-15!43;CL:0000221!1.52e-15!44;CL:0000133!1.52e-15!44;CL:0000540!2.81e-15!33;CL:0000047!2.81e-15!33;CL:0000031!2.81e-15!33;CL:0000404!2.81e-15!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000055!2.42e-13!50;CL:0002321!6.98e-08!70;CL:0000220!6.98e-08!70 | |ontology_enrichment_celltype=CL:0002319!1.05e-15!43;CL:0000221!1.52e-15!44;CL:0000133!1.52e-15!44;CL:0000540!2.81e-15!33;CL:0000047!2.81e-15!33;CL:0000031!2.81e-15!33;CL:0000404!2.81e-15!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000055!2.42e-13!50;CL:0002321!6.98e-08!70;CL:0000220!6.98e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.02e-16,33;CL:0000047,1.02e-16,33;CL:0000031,1.02e-16,33;CL:0000404,1.02e-16,33;CL:0002319,1.68e-16,43;CL:0000221,2.48e-16,44;CL:0000133,2.48e-16,44;CL:0000117,1.10e-14,23;CL:0000337,1.10e-14,23;CL:0000393,2.34e-14,39;CL:0000211,2.34e-14,39;CL:0002321,1.31e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.86e-31!75;UBERON:0001016!4.86e-31!75;UBERON:0001017!1.07e-30!73;UBERON:0005743!1.07e-30!73;UBERON:0004121!1.81e-28!102;UBERON:0000924!1.81e-28!102;UBERON:0006601!1.81e-28!102;UBERON:0002346!9.39e-24!71;UBERON:0003075!9.39e-24!71;UBERON:0007284!9.39e-24!71;UBERON:0000033!1.47e-22!63;UBERON:0001049!2.10e-22!52;UBERON:0005068!2.10e-22!52;UBERON:0006241!2.10e-22!52;UBERON:0007135!2.10e-22!52;UBERON:0000955!8.57e-21!50;UBERON:0006238!8.57e-21!50;UBERON:0002616!2.75e-20!49;UBERON:0002020!1.07e-18!34;UBERON:0003056!3.36e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!6.62e-16!39;UBERON:0001890!6.62e-16!39;UBERON:0006240!6.62e-16!39;UBERON:0002791!1.98e-15!29;UBERON:0003528!1.98e-15!29;UBERON:0001893!1.98e-15!29;UBERON:0000956!3.61e-11!21;UBERON:0001869!3.61e-11!21;UBERON:0000203!3.61e-11!21;UBERON:0007811!1.81e-09!86;UBERON:0002619!3.64e-09!17;UBERON:0000153!5.11e-09!94;UBERON:0002021!5.70e-08!10;UBERON:0000411!5.70e-08!10;UBERON:0001950!5.70e-08!10 | |ontology_enrichment_uberon=UBERON:0000073!4.86e-31!75;UBERON:0001016!4.86e-31!75;UBERON:0001017!1.07e-30!73;UBERON:0005743!1.07e-30!73;UBERON:0004121!1.81e-28!102;UBERON:0000924!1.81e-28!102;UBERON:0006601!1.81e-28!102;UBERON:0002346!9.39e-24!71;UBERON:0003075!9.39e-24!71;UBERON:0007284!9.39e-24!71;UBERON:0000033!1.47e-22!63;UBERON:0001049!2.10e-22!52;UBERON:0005068!2.10e-22!52;UBERON:0006241!2.10e-22!52;UBERON:0007135!2.10e-22!52;UBERON:0000955!8.57e-21!50;UBERON:0006238!8.57e-21!50;UBERON:0002616!2.75e-20!49;UBERON:0002020!1.07e-18!34;UBERON:0003056!3.36e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!6.62e-16!39;UBERON:0001890!6.62e-16!39;UBERON:0006240!6.62e-16!39;UBERON:0002791!1.98e-15!29;UBERON:0003528!1.98e-15!29;UBERON:0001893!1.98e-15!29;UBERON:0000956!3.61e-11!21;UBERON:0001869!3.61e-11!21;UBERON:0000203!3.61e-11!21;UBERON:0007811!1.81e-09!86;UBERON:0002619!3.64e-09!17;UBERON:0000153!5.11e-09!94;UBERON:0002021!5.70e-08!10;UBERON:0000411!5.70e-08!10;UBERON:0001950!5.70e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.05e-33,75;UBERON:0001017,1.72e-32,73;UBERON:0004121,2.57e-30,95;UBERON:0000924,2.57e-30,95;UBERON:0006601,2.57e-30,95;UBERON:0002346,1.52e-26,64;UBERON:0003075,1.52e-26,64;UBERON:0007284,1.52e-26,64;UBERON:0000073,9.20e-25,54;UBERON:0001049,2.31e-23,52;UBERON:0005068,2.31e-23,52;UBERON:0006241,2.31e-23,52;UBERON:0007135,2.31e-23,52;UBERON:0010371,4.41e-22,73;UBERON:0002020,4.00e-20,34;UBERON:0000955,1.39e-19,47;UBERON:0006238,1.39e-19,47;UBERON:0003056,3.31e-19,49;UBERON:0002616,4.81e-19,46;UBERON:0003080,2.75e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0010314,1.67e-16,92;UBERON:0000956,7.98e-12,21;UBERON:0001869,7.98e-12,21;UBERON:0000203,7.98e-12,21;UBERON:0002619,1.29e-09,17;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10 | |||
|phase1_expression=4.48416771893423,2.09385244583617,0.909998478779072,3.32710632437513,1.00179145989269,1.00727563147134,0.233612640595526,0.774739940649458,2.111830832275,2.80877431586392,0.513653904676515,0.398860794976682,0.342401459862411,0.174840804837995,0,0.607425802169478,0,0.157731082679119,0,0,3.48677489619386,0.198581902401771,0.261199789138935,0.319984845586813,0.68822784320151,1.14846392823004,1.7230479846363,0.861884930743556,1.33016393619462,1.00812051903972,0.665191531965914,0,0.61506478758457,0,0.288851619751275,0.166234645358492,0,1.25559489221072,0.7813353445238,1.57057123192139,2.35292595212406,2.04913645487534,1.45653105909346,0.755380907853464,0.608261587317087,2.56965453026354,4.69434806608824,0.872100625521786,1.75748946187577,0.777719596297134,1.81982348112971,2.87505128729943,0,1.45072428402269,2.01656279485478,1.54355661621568,1.71920063963254,1.03134418455488,12.3413041124355,22.7466121086974,13.3104594736298,3.38844532069132,2.66788438833342,1.3498495759221,0.988866362566974,1.4209602298922,3.59520132622086,5.37905627450176,5.59923906465779,6.88530285491622,6.94072372459561,34.2781181284564,22.5285911770646,5.51208596467293,6.03826467414889,3.67687514644008,12.1127469099328,23.6221575457597,20.1224558565679,16.2220133908138,15.4614117688072,14.0646610050325,19.821992929098,7.31591393041184,11.7654650788144,23.8649154233671,23.0642122894547,16.0303523409758,1.81742863999642,3.17400552448499,0.579728977403356,0,2.03991400112325,0,1.94932925234301,1.79210754838934,0.561777680527007,1.02258193546835,0,1.06001872353102,1.40843419776681,0,2.54805239706646,0,0.865964164044856,0.506719730950197,0.505524445014783,1.7127581957859,0.258937883647172,0.29688427812965,1.73485326766136,1.82679286987285,2.53677046981664,2.26083960828934,1.88141931417128,0.376999773989026,2.22475470960936,0.578397427679647,0.884610551949874,1.13236794963186,0.441683036920787,0,0,5.27005434620785,4.39838084308256,1.27728527604296,0.479260498023681,0,0.889491589511453,16.7765516133401,16.4700217014706,8.67015029578764,25.2045264278801,26.0829766476937,20.3632283668369,15.2506787283692,1.01839363850316,0.373220911830279,0.758168275301024,2.10441855886474,1.30120442962704,3.44853156650209,2.88099407688559,2.86339153887859,2.99360596265843,3.07472928683639,2.99845518591132,4.9153640440413,1.72454394346274,1.70195472151037,2.63926686245923,1.31517439456545,1.94633074457919,0.696504333044333,0.823128545631774,0.59710280045548,0,0.51469581422943,0.568326998791185,1.65700618028402,0.469052119962192,1.08037236876609,0.710234206755631,0.393528463494808,0.925602677324269,0.232533944750408,0.536546802799238,0.583826711835847,0.493679549740441,0.32833492815819,0.891756905004413,0.438599962275997,0.219550115291051,0,19.9775451135921,11.216602749342,4.62586296177317,0.793351699990633,0.853153002140936,2.09013004674395,0.515469845288373,1.00841762311671,1.11189021922435,1.33157938278791,0.474529061544512,0.988193728344065,1.25667604400135,0.596869416123452,1.16978452271472,1.79763881730844,1.51296634912286,1.39398891278057,0.758671603812327,0.913988100877831,1.1270773567308,0.814605311381257,0.387904974335251,0.98190147846446,0.379419222745544,0.147610147979602,0.627994911365499,0.370191491765402,0.296452627087149,0.667380422864376,0.393117990226406,0.674586337154561,0.608580364165509,0.241177159752417,0.25462585178142,0.575392274901621,0.324270453550071,0.274561413188081,1.43768206527355,1.48856379067401,0.936113019343682,0.505157755894224,0.896987067609561,0.964887042726734,0.923765950833023,0.757965647081939,0.814824882210129,0.169745085775188,0,0,0.714130922658041,0.975668239288994,0.788175720530955,0.221464689648775,0.478364305972461,0.327726629431476,0.518054945597687,0.144649058581512,0,0.54390568381871,2.45882136509518,0.827810238914197,18.4633178485961,14.5342491374332,0.655739781506702,0,2.52406575533005,3.51394869866975,3.87762115919038,2.86762557543062,1.11399337041197,3.39691836946599,2.83367491172426,3.79932615284705,3.16230222357219,5.78378369559253,0.851640511249612,0.35613120733451,0.977321756121456,0.329940245945071,0,0.971122544619926,0.604647113929502,0.188605079755898,1.18120757152309,0,0.516856586336442,1.09060118843252,0,0,0,0,1.02131881726136,2.16073312837572,1.03486947026204,2.57204442037911,2.48276327099183,3.0322698992352,3.1264313914403,0.913394847343798,1.64270195644597,1.48282449604674,1.10264199027481,0.49465875882444,0.645857706783622,0.603129249281559,0.477489376012546,0.656563598980245,0.291480836629851,19.284231409093,0.683483523191411,0.412773735926445,0.185194527369712,0,0.136694227721025,0.686334519619568,0.679913719975421,0.839708713941948,0.552799895217695,1.90934123603023,1.42351197111511,0.609958401380546,1.08005340821801,0.418176592028937,0.655087691238533,0.134864346384821,0.991841468704031,0.26175594198403,0.777689839750757,1.24267862617385,9.01908701894705,1.49516546043979,1.15820943319968,1.55560950675238,1.29159823477731,1.35164900392623,1.05621514781179,1.43224823328345,1.6777495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| ||
|short_description=p3@Rab6a | |short_description=p3@Rab6a | ||
}} | }} |
Latest revision as of 14:53, 25 September 2015
Short description: | p3@Rab6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rab6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 146bp_to_ENSMUST00000098252_5end |
EntrezGene: | Rab6a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.02e-16 | 33 |
neuronal stem cell | 1.02e-16 | 33 |
neuroblast | 1.02e-16 | 33 |
electrically signaling cell | 1.02e-16 | 33 |
neural cell | 1.68e-16 | 43 |
ectodermal cell | 2.48e-16 | 44 |
neurectodermal cell | 2.48e-16 | 44 |
CNS neuron (sensu Vertebrata) | 1.10e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.10e-14 | 23 |
electrically responsive cell | 2.34e-14 | 39 |
electrically active cell | 2.34e-14 | 39 |
embryonic cell | 1.31e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.05e-33 | 75 |
central nervous system | 1.72e-32 | 73 |
ectoderm-derived structure | 2.57e-30 | 95 |
ectoderm | 2.57e-30 | 95 |
presumptive ectoderm | 2.57e-30 | 95 |
neurectoderm | 1.52e-26 | 64 |
neural plate | 1.52e-26 | 64 |
presumptive neural plate | 1.52e-26 | 64 |
regional part of nervous system | 9.20e-25 | 54 |
neural tube | 2.31e-23 | 52 |
neural rod | 2.31e-23 | 52 |
future spinal cord | 2.31e-23 | 52 |
neural keel | 2.31e-23 | 52 |
ecto-epithelium | 4.41e-22 | 73 |
gray matter | 4.00e-20 | 34 |
brain | 1.39e-19 | 47 |
future brain | 1.39e-19 | 47 |
pre-chordal neural plate | 3.31e-19 | 49 |
regional part of brain | 4.81e-19 | 46 |
anterior neural tube | 2.75e-17 | 40 |
regional part of forebrain | 1.19e-16 | 39 |
forebrain | 1.19e-16 | 39 |
future forebrain | 1.19e-16 | 39 |
brain grey matter | 1.61e-16 | 29 |
regional part of telencephalon | 1.61e-16 | 29 |
telencephalon | 1.61e-16 | 29 |
structure with developmental contribution from neural crest | 1.67e-16 | 92 |
cerebral cortex | 7.98e-12 | 21 |
cerebral hemisphere | 7.98e-12 | 21 |
pallium | 7.98e-12 | 21 |
regional part of cerebral cortex | 1.29e-09 | 17 |
occipital lobe | 1.20e-08 | 10 |
visual cortex | 1.20e-08 | 10 |
neocortex | 1.20e-08 | 10 |