FFCP PHASE1:Hg19::chr18:18822216..18822246,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80000 | |EntrezGene=80000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31042 | |HGNC=31042 | ||
|TSSclassifier=strong | |||
|UniProt=Q9C091,B4DDS9 | |UniProt=Q9C091,B4DDS9 | ||
|association_with_transcript=13bp_to_ENST00000269218,ENST00000400483,ENST00000424526,ENST00000431264,NM_001142966,uc002ktf.1,uc010dlp.1,uc010xam.1_5end | |association_with_transcript=13bp_to_ENST00000269218,ENST00000400483,ENST00000424526,ENST00000431264,NM_001142966,uc002ktf.1,uc010dlp.1,uc010xam.1_5end | ||
|cluster_id=chr18:18822216..18822246,+ | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_2_at_GREB1L_5end | |description=CAGE_peak_2_at_GREB1L_5end | ||
|id=chr18:18822216..18822246,+ | |id=chr18:18822216..18822246,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.51e-11!254 | |ontology_enrichment_celltype=CL:0000066!6.51e-11!254 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.58e-07;19!CL:0002537;7.78e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.25e-07,19;CL:0002537,9.71e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.38e-13!106;DOID:0050687!4.54e-13!143;DOID:14566!6.31e-08!239;DOID:162!3.16e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.94e-10,143;DOID:305,9.08e-10,106;DOID:14566,6.79e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.17e-12!57;UBERON:0005068!5.17e-12!57;UBERON:0006241!5.17e-12!57;UBERON:0007135!5.17e-12!57;UBERON:0003075!9.81e-11!86;UBERON:0007284!9.81e-11!86;UBERON:0000064!7.18e-10!219;UBERON:0002616!9.22e-10!59;UBERON:0000955!1.19e-09!69;UBERON:0006238!1.19e-09!69;UBERON:0000062!1.52e-09!511;UBERON:0002020!1.85e-09!34;UBERON:0003528!1.85e-09!34;UBERON:0003080!1.91e-09!42;UBERON:0002780!2.79e-09!41;UBERON:0001890!2.79e-09!41;UBERON:0006240!2.79e-09!41;UBERON:0002346!2.87e-09!90;UBERON:0001893!2.93e-09!34;UBERON:0000468!3.02e-09!659;UBERON:0007023!3.29e-09!115;UBERON:0002791!5.94e-09!33;UBERON:0000073!8.47e-09!94;UBERON:0001016!8.47e-09!94;UBERON:0004121!1.33e-08!169;UBERON:0001869!2.13e-08!32;UBERON:0005743!2.93e-08!86;UBERON:0001017!3.97e-08!82;UBERON:0000924!9.97e-08!173;UBERON:0006601!9.97e-08!173;UBERON:0003056!1.33e-07!61;UBERON:0005631!1.65e-07!14;UBERON:0000158!1.65e-07!14;UBERON:0000467!5.49e-07!625;UBERON:0000480!7.56e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.90e-12;10!UBERON:0000158;5.90e-12;10!UBERON:0000305;6.36e-09;7!UBERON:0002420;1.93e-08;9!UBERON:0007245;1.93e-08;9!UBERON:0010009;1.93e-08;9!UBERON:0010011;1.93e-08;9!UBERON:0000454;1.93e-08;9!UBERON:0000125;1.18e-07;9!UBERON:0002308;1.18e-07;9!UBERON:0003528;1.68e-07;34!UBERON:0002020;1.68e-07;34!UBERON:0001893;1.69e-07;34!UBERON:0002791;2.67e-07;32!UBERON:0000478;2.86e-07;24!UBERON:0002780;3.73e-07;41!UBERON:0001890;3.73e-07;41!UBERON:0000349;5.93e-07;5!UBERON:0000073;7.36e-07;53!UBERON:0002616;7.36e-07;53!UBERON:0001869;9.14e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.26e-11,14;UBERON:0000158,3.26e-11,14;UBERON:0003528,1.90e-09,34;UBERON:0002020,1.90e-09,34;UBERON:0000073,3.41e-09,53;UBERON:0002616,3.41e-09,53;UBERON:0001893,3.49e-09,34;UBERON:0001049,4.18e-09,56;UBERON:0005068,4.18e-09,56;UBERON:0006241,4.18e-09,56;UBERON:0007135,4.18e-09,56;UBERON:0002780,4.57e-09,41;UBERON:0001890,4.57e-09,41;UBERON:0003080,4.57e-09,41;UBERON:0006240,4.57e-09,41;UBERON:0000305,7.15e-09,7;UBERON:0002420,2.29e-08,9;UBERON:0007245,2.29e-08,9;UBERON:0010009,2.29e-08,9;UBERON:0010011,2.29e-08,9;UBERON:0000454,2.29e-08,9;UBERON:0002791,3.76e-08,32;UBERON:0003075,5.19e-08,82;UBERON:0007284,5.19e-08,82;UBERON:0001869,6.18e-08,32;UBERON:0000125,1.14e-07,9;UBERON:0002308,1.14e-07,9;UBERON:0004871,1.49e-07,8;UBERON:0000955,1.76e-07,68;UBERON:0006238,1.76e-07,68;UBERON:0002346,3.21e-07,86;UBERON:0000478,3.47e-07,24;UBERON:0000349,6.02e-07,5;UBERON:0003056,8.95e-07,61 | |||
|phase1_expression=2.18014055124668,0.642301571672949,3.24195129420734,0,1.34088328328186,1.74467704820074,0,0,0.783556884599516,0.737201809504527,0,3.05817920982241,2.90143676051299,0,0,0,0,0,0,1.35433163884467,0.204000691244253,0.940364164434263,0.286235987131057,1.91624195102038,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,0.221729397462564,0.351339142772504,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0,0,0,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0.735326160691737,0,0.267899184852239,0.22452937262617,0.225222960966644,0,1.89853131913626,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0.49333509683432,0,0.269421344139376,0.326923806226917,0.454072282934794,0,0,0,0,0.298897361103602,0,0.485618833104395,0,0.816616685019573,0,1.13658359293342,0,0,0,0.718618141816238,0.168336113954066,0.375355559615893,2.21651292387346,0,0,0,0.113432183160021,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,0.103052529238439,1.03056216018252,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.276149695926898,0,0,0.10075209822764,0,0,0,0,1.09776335516636,1.45782745153634,1.74290914304278,3.21349270547648,1.26160425437814,3.6497735907583,0,0,0,0.928735856063958,0.721879481669586,2.9576700009961,3.20310911148393,2.41011029883482,1.54411561825352,3.7039505495709,3.08451804844426,0.943819157121151,2.74710051175484,0.38474715694639,0.738155454624648,0,0,0,0,0,1.18157981336281,0,5.53447973444011,0,0,0,0.201057944823262,0.462942225792648,0,0,0,1.507095264676,0.117408694235822,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0.358234090811393,0.290633938513962,0,0,0,0.414656231081544,0,0.12624243342638,0.190493682876507,0,0,0,0,0,0.857479297891735,0,0,0,0.129271715757778,0,0,1.32969058292435,2.08014873822732,0,0,0,0.285955987316295,1.08524321078289,0,0,0,0,0,0.871533458600294,0.599837947092342,0,0,0,0,0,0,1.15825045334063,1.2328579353023,1.96967059563885,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.36807447515742,0,0,1.03985430765404,1.78428988797162,1.73472656537328,1.40569697991256,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0.606255142892519,0,3.62868351995616,0.744323423456331,1.84154367945675,0.561320188866147,1.40953064181271,0,0.965123526861645,1.48418066444991,0,0,0.0821271560138091,0,0,4.59265908448164,0.200506470303285,0.184161977871793,0,0,0.524497659837696,0,0.539107359730903,0.784349769176855,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0.650756789328606,1.13345112812495,0,0,0.574265537996172,0.650060246036521,0,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0,0.165284915360978,0.192190067365106,1.14851441245126,0.4046311234222,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0,0,0,0,3.13979456079692,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0.136499911407986,0,0,1.10273068709225,0,0,0,0,0,0,0,0.143411352204052,0.392996164052485,0,0.709522128141196,0,0,0,0,0.384888450902048,0,0,0.847294206991012,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.961416640147258,0.962479855263359,0.735120647943095,0,0,0,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0.671028323677248,0.667396566847634,0,0,0,0,0,0,0,0.73254089635947,3.76217617423492,0,0.284136146806413,3.58116727106535,10.3937638291424,5.83605333988541,7.95318118213038,4.78276015795743,0.333926115068718,0,3.1668811219199,0.996239941255349,0.828851746593443,2.77126022639704,0,0,1.24415835064723,0.808815160325942,0.537063524026827,0,0,0,0,0,0.74214478529481,0,1.30213880542617,1.13697999995054,0.724999575434793,0.682760689712998,0.762760950878299,3.30942754475111,3.79217710565611,0,1.90987494426621,0.885741385813839,2.17073589525734,0,0.552896299656123,0.295547618953547,0.219385397153973,0.762569244632931,1.53366118706464,0.153900517007594,3.76008784295104,26.745412909015,18.0412865263642,20.2084111774935,3.82801391678303,2.1983422416447,2.66517388009317,0,0,0,0,0,0,0,0,0.632994193584081,0.652931232636591,5.79547592879157,0.216388639742091,0,0.353830258013357,0,0.296521128680622,0.247127877893006,0.417687798021821,1.55022605855557,0,1.1713222286267,0,0.978323094660449,0.485560759068186,8.68085686268659,0,0,0,1.80388103297391,4.14752765588989,0.664653872707185,0.330991955875499,0,4.77889719091835,0.284609546029793,0,0.173559738335131,0,0.0870592065804026,2.44617335538842,0,1.83837029449262,2.11959019549938,1.88865551222381,0.484945082442097,0.529536760149002,1.12990370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|phase1_expression=2.18014055124668,0.642301571672949,3.24195129420734,0,1.34088328328186,1.74467704820074,0,0,0.783556884599516,0.737201809504527,0,3.05817920982241,2.90143676051299,0,0,0,0,0,0,1.35433163884467,0.204000691244253,0.940364164434263,0.286235987131057,1.91624195102038,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.756278537312543,0.221729397462564,0.351339142772504,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0,0,0,0.516833518338658,0.71153252537342,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0.735326160691737,0,0.267899184852239,0.22452937262617,0.225222960966644,0,1.89853131913626,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0.49333509683432,0,0.269421344139376,0.326923806226917,0.454072282934794,0,0,0,0,0.298897361103602,0,0.485618833104395,0,0.816616685019573,0,1.13658359293342,0,0,0,0.718618141816238,0.168336113954066,0.375355559615893,2.21651292387346,0,0,0,0.113432183160021,0.358779271377724,0.427114777637135,0.423863802319124,0.600182192168805,0.103052529238439,1.03056216018252,0.37223371266318,0.168776332241266,0.0974370051611986,0,0.276149695926898,0,0,0.10075209822764,0,0,0,0,1.09776335516636,1.45782745153634,1.74290914304278,3.21349270547648,1.26160425437814,3.6497735907583,0,0,0,0.928735856063958,0.721879481669586,2.9576700009961,3.20310911148393,2.41011029883482,1.54411561825352,3.7039505495709,3.08451804844426,0.943819157121151,2.74710051175484,0.38474715694639,0.738155454624648,0,0,0,0,0,1.18157981336281,0,5.53447973444011,0,0,0,0.201057944823262,0.462942225792648,0,0,0,1.507095264676,0.117408694235822,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0,0,0.358234090811393,0.290633938513962,0,0,0,0.414656231081544,0,0.12624243342638,0.190493682876507,0,0,0,0,0,0.857479297891735,0,0,0,0.129271715757778,0,0,1.32969058292435,2.08014873822732,0,0,0,0.285955987316295,1.08524321078289,0,0,0,0,0,0.871533458600294,0.599837947092342,0,0,0,0,0,0,1.15825045334063,1.2328579353023,1.96967059563885,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.36807447515742,0,0,1.03985430765404,1.78428988797162,1.73472656537328,1.40569697991256,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0.606255142892519,0,3.62868351995616,0.744323423456331,1.84154367945675,0.561320188866147,1.40953064181271,0,0.965123526861645,1.48418066444991,0,0,0.0821271560138091,0,0,4.59265908448164,0.200506470303285,0.184161977871793,0,0,0.524497659837696,0,0.539107359730903,0.784349769176855,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0.509752546090077,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0.650756789328606,1.13345112812495,0,0,0.574265537996172,0.650060246036521,0,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0,0.165284915360978,0.192190067365106,1.14851441245126,0.4046311234222,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0,0,0,0,3.13979456079692,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0.136499911407986,0,0,1.10273068709225,0,0,0,0,0,0,0,0.143411352204052,0.392996164052485,0,0.709522128141196,0,0,0,0,0.384888450902048,0,0,0.847294206991012,0,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,0.961416640147258,0.962479855263359,0.735120647943095,0,0,0,1.27541018183058,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0.307240764308458,0.671028323677248,0.667396566847634,0,0,0,0,0,0,0,0.73254089635947,3.76217617423492,0,0.284136146806413,3.58116727106535,10.3937638291424,5.83605333988541,7.95318118213038,4.78276015795743,0.333926115068718,0,3.1668811219199,0.996239941255349,0.828851746593443,2.77126022639704,0,0,1.24415835064723,0.808815160325942,0.537063524026827,0,0,0,0,0,0.74214478529481,0,1.30213880542617,1.13697999995054,0.724999575434793,0.682760689712998,0.762760950878299,3.30942754475111,3.79217710565611,0,1.90987494426621,0.885741385813839,2.17073589525734,0,0.552896299656123,0.295547618953547,0.219385397153973,0.762569244632931,1.53366118706464,0.153900517007594,3.76008784295104,26.745412909015,18.0412865263642,20.2084111774935,3.82801391678303,2.1983422416447,2.66517388009317,0,0,0,0,0,0,0,0,0.632994193584081,0.652931232636591,5.79547592879157,0.216388639742091,0,0.353830258013357,0,0.296521128680622,0.247127877893006,0.417687798021821,1.55022605855557,0,1.1713222286267,0,0.978323094660449,0.485560759068186,8.68085686268659,0,0,0,1.80388103297391,4.14752765588989,0.664653872707185,0.330991955875499,0,4.77889719091835,0.284609546029793,0,0.173559738335131,0,0.0870592065804026,2.44617335538842,0,1.83837029449262,2.11959019549938,1.88865551222381,0.484945082442097,0.529536760149002,1.12990370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| ||
|short_description=p2@GREB1L | |short_description=p2@GREB1L | ||
}} | }} |
Latest revision as of 21:59, 18 September 2015
Short description: | p2@GREB1L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GREB1L_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 13bp_to_ENST00000269218, ENST00000400483, ENST00000424526, ENST00000431264, NM_001142966, uc002ktf.1, uc010dlp.1, uc010xam.1_5end |
EntrezGene: | GREB1L |
HGNC: | 31042 |
UniProt: | Q9C091B4DDS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.25e-07 | 19 |
amnion mesenchymal stem cell | 9.71e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.26e-11 | 14 |
membranous layer | 3.26e-11 | 14 |
brain grey matter | 1.90e-09 | 34 |
gray matter | 1.90e-09 | 34 |
regional part of nervous system | 3.41e-09 | 53 |
regional part of brain | 3.41e-09 | 53 |
telencephalon | 3.49e-09 | 34 |
neural tube | 4.18e-09 | 56 |
neural rod | 4.18e-09 | 56 |
future spinal cord | 4.18e-09 | 56 |
neural keel | 4.18e-09 | 56 |
regional part of forebrain | 4.57e-09 | 41 |
forebrain | 4.57e-09 | 41 |
anterior neural tube | 4.57e-09 | 41 |
future forebrain | 4.57e-09 | 41 |
amnion | 7.15e-09 | 7 |
basal ganglion | 2.29e-08 | 9 |
nuclear complex of neuraxis | 2.29e-08 | 9 |
aggregate regional part of brain | 2.29e-08 | 9 |
collection of basal ganglia | 2.29e-08 | 9 |
cerebral subcortex | 2.29e-08 | 9 |
regional part of telencephalon | 3.76e-08 | 32 |
neural plate | 5.19e-08 | 82 |
presumptive neural plate | 5.19e-08 | 82 |
cerebral hemisphere | 6.18e-08 | 32 |
neural nucleus | 1.14e-07 | 9 |
nucleus of brain | 1.14e-07 | 9 |
somatic layer of lateral plate mesoderm | 1.49e-07 | 8 |
brain | 1.76e-07 | 68 |
future brain | 1.76e-07 | 68 |
neurectoderm | 3.21e-07 | 86 |
extraembryonic structure | 3.47e-07 | 24 |
limbic system | 6.02e-07 | 5 |
pre-chordal neural plate | 8.95e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.94e-10 | 143 |
carcinoma | 9.08e-10 | 106 |
disease of cellular proliferation | 6.79e-07 | 239 |