FFCP PHASE1:Hg19::chr12:78334115..78334165,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000551277_5end | |association_with_transcript=16bp_to_ENST00000551277_5end | ||
|cluster_id=chr12:78334115..78334165,+ | |||
|coexpression_cluster_id=C1687 | |||
|description=CAGE_peak_3_at_NAV3_5end | |description=CAGE_peak_3_at_NAV3_5end | ||
|id=chr12:78334115..78334165,+ | |id=chr12:78334115..78334165,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.13e-34!180;CL:0000222!3.31e-31!119;CL:0000220!6.61e-21!246;CL:0002321!1.38e-20!248;CL:0000057!1.09e-19!75;CL:0000680!1.07e-17!57;CL:0000056!1.07e-17!57;CL:0000355!1.07e-17!57;CL:0000192!4.84e-17!42;CL:0000514!4.84e-17!42;CL:0000187!2.40e-16!54;CL:0000359!4.54e-15!32;CL:0000183!4.56e-15!59;CL:0000393!1.73e-14!60;CL:0000211!1.73e-14!60;CL:0000548!5.32e-14!679;CL:0000004!5.32e-14!679;CL:0000255!5.32e-14!679;CL:0000012!1.98e-13!682;CL:0000213!1.27e-12!57;CL:0000215!1.27e-12!57;CL:0000144!2.72e-11!625;CL:0002620!2.76e-11!23;CL:0000076!1.26e-10!62;CL:0000077!5.92e-09!19;CL:0002139!6.20e-09!24;CL:0002371!1.19e-08!591;CL:0000071!1.92e-07!18;CL:0002546!1.92e-07!18;CL:0002078!2.07e-07!44;CL:0000003!3.64e-07!722;CL:0002539!3.87e-07!10;CL:0000115!6.36e-07!35 | |ontology_enrichment_celltype=CL:0000055!1.13e-34!180;CL:0000222!3.31e-31!119;CL:0000220!6.61e-21!246;CL:0002321!1.38e-20!248;CL:0000057!1.09e-19!75;CL:0000680!1.07e-17!57;CL:0000056!1.07e-17!57;CL:0000355!1.07e-17!57;CL:0000192!4.84e-17!42;CL:0000514!4.84e-17!42;CL:0000187!2.40e-16!54;CL:0000359!4.54e-15!32;CL:0000183!4.56e-15!59;CL:0000393!1.73e-14!60;CL:0000211!1.73e-14!60;CL:0000548!5.32e-14!679;CL:0000004!5.32e-14!679;CL:0000255!5.32e-14!679;CL:0000012!1.98e-13!682;CL:0000213!1.27e-12!57;CL:0000215!1.27e-12!57;CL:0000144!2.72e-11!625;CL:0002620!2.76e-11!23;CL:0000076!1.26e-10!62;CL:0000077!5.92e-09!19;CL:0002139!6.20e-09!24;CL:0002371!1.19e-08!591;CL:0000071!1.92e-07!18;CL:0002546!1.92e-07!18;CL:0002078!2.07e-07!44;CL:0000003!3.64e-07!722;CL:0002539!3.87e-07!10;CL:0000115!6.36e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0000359;2.39e-16;32!CL:0000192;5.68e-13;43!CL:0002620;1.37e-10;23!CL:0000077;2.14e-10;19!CL:0002139;4.53e-09;24!CL:0002539;6.28e-09;10!CL:0000187;1.00e-08;55!CL:0002334;2.22e-08;12!CL:0000213;5.18e-08;58!CL:0000215;5.18e-08;58!CL:0000071;9.50e-08;18!CL:0000057;2.44e-07;73!CL:0000393;5.98e-07;61!CL:0000211;5.98e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.41e-30,121;CL:0000057,3.16e-18,76;CL:0000680,1.99e-17,58;CL:0000056,1.99e-17,58;CL:0000355,1.99e-17,58;CL:0000359,2.08e-17,32;CL:0000192,2.57e-17,43;CL:0000514,2.57e-17,43;CL:0000187,8.87e-16,55;CL:0002321,5.05e-14,250;CL:0000213,6.91e-13,58;CL:0000215,6.91e-13,58;CL:0000393,7.37e-13,61;CL:0000211,7.37e-13,61;CL:0002620,9.12e-11,23;CL:0000077,2.22e-10,19;CL:0002139,4.11e-09,24;CL:0000076,6.77e-09,63;CL:0002539,6.88e-09,10;CL:0000723,7.92e-09,433;CL:0000048,8.30e-09,427;CL:0002334,1.92e-08,12;CL:0000034,5.48e-08,441;CL:0000071,1.02e-07,18;CL:0002546,1.02e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000514;5.68e-13;43!CL:0000355;1.01e-08;58!CL:0000222;6.77e-08;121!CL:0002546;9.50e-08;18 | |||
|ontology_enrichment_disease=DOID:2394!9.07e-08!14 | |ontology_enrichment_disease=DOID:2394!9.07e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;5.74e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.34e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!6.64e-22!79;UBERON:0007798!6.64e-22!79;UBERON:0000055!8.27e-20!69;UBERON:0000914!5.12e-19!83;UBERON:0002329!5.12e-19!83;UBERON:0003077!5.12e-19!83;UBERON:0003059!5.12e-19!83;UBERON:0007282!5.12e-19!83;UBERON:0009618!5.12e-19!83;UBERON:0007285!5.12e-19!83;UBERON:0001981!1.08e-18!60;UBERON:0007500!1.08e-18!60;UBERON:0004537!1.08e-18!60;UBERON:0006965!1.08e-18!60;UBERON:0004290!1.22e-17!70;UBERON:0000490!1.23e-17!138;UBERON:0005256!2.67e-17!143;UBERON:0001637!3.47e-17!42;UBERON:0003509!3.47e-17!42;UBERON:0004572!3.47e-17!42;UBERON:0000486!1.18e-16!82;UBERON:0001134!7.55e-16!61;UBERON:0002036!7.55e-16!61;UBERON:0003082!7.55e-16!61;UBERON:0004872!8.45e-16!84;UBERON:0002385!2.97e-15!63;UBERON:0001015!2.97e-15!63;UBERON:0000383!2.97e-15!63;UBERON:0004535!1.70e-14!110;UBERON:0003914!1.98e-14!118;UBERON:0004573!2.40e-14!33;UBERON:0004571!2.40e-14!33;UBERON:0002100!9.86e-14!216;UBERON:0000475!1.00e-13!365;UBERON:0001009!2.51e-13!113;UBERON:0002199!1.08e-10!45;UBERON:0002416!1.08e-10!45;UBERON:0003102!1.59e-10!95;UBERON:0000947!1.05e-09!21;UBERON:0010191!1.05e-09!21;UBERON:0002097!1.54e-09!40;UBERON:0000119!1.19e-08!312;UBERON:0000483!1.66e-08!309;UBERON:0003104!4.81e-08!238;UBERON:0009142!4.81e-08!238;UBERON:0001135!8.76e-08!15;UBERON:0000487!1.36e-07!22;UBERON:0000468!1.68e-07!659;UBERON:0001986!1.92e-07!18;UBERON:0004638!1.92e-07!18;UBERON:0004852!1.92e-07!18;UBERON:0000467!3.75e-07!625;UBERON:0004237!3.87e-07!10;UBERON:0004695!3.87e-07!10;UBERON:0002111!3.87e-07!10;UBERON:0004178!3.87e-07!10;UBERON:0000480!5.10e-07!626;UBERON:0000477!9.04e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.76e-14;33!UBERON:0004571;1.76e-14;33!UBERON:0001637;4.37e-14;42!UBERON:0003509;4.37e-14;42!UBERON:0004572;4.37e-14;42!UBERON:0007500;2.90e-13;56!UBERON:0001981;2.90e-13;56!UBERON:0004537;2.90e-13;56!UBERON:0000055;7.47e-11;65!UBERON:0000947;1.11e-10;21!UBERON:0010191;1.11e-10;21!UBERON:0002049;2.46e-09;75!UBERON:0007798;2.46e-09;75!UBERON:0001135;3.30e-09;15!UBERON:0004237;6.28e-09;10!UBERON:0004695;6.28e-09;10!UBERON:0002111;6.28e-09;10!UBERON:0004178;6.28e-09;10!UBERON:0003914;6.95e-09;74!UBERON:0002385;5.06e-08;31!UBERON:0001015;5.06e-08;31!UBERON:0000383;5.06e-08;31!UBERON:0004638;9.50e-08;18!UBERON:0001986;9.50e-08;18!UBERON:0004852;9.50e-08;18!UBERON:0000487;1.48e-07;22 | |||
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| ||
|short_description=p3@NAV3 | |short_description=p3@NAV3 | ||
}} | }} |
Latest revision as of 22:38, 24 September 2015
Short description: | p3@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NAV3_5end |
Coexpression cluster: | C1687_liposarcoma_basal_Preadipocyte_Fibroblast_mesenchymal_Smooth_leiomyoma |
Association with transcript: | 16bp_to_ENST00000551277_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.41e-30 | 121 |
fibroblast | 3.16e-18 | 76 |
muscle precursor cell | 1.99e-17 | 58 |
myoblast | 1.99e-17 | 58 |
multi-potent skeletal muscle stem cell | 1.99e-17 | 58 |
vascular associated smooth muscle cell | 2.08e-17 | 32 |
smooth muscle cell | 2.57e-17 | 43 |
smooth muscle myoblast | 2.57e-17 | 43 |
muscle cell | 8.87e-16 | 55 |
embryonic cell | 5.05e-14 | 250 |
lining cell | 6.91e-13 | 58 |
barrier cell | 6.91e-13 | 58 |
electrically responsive cell | 7.37e-13 | 61 |
electrically active cell | 7.37e-13 | 61 |
skin fibroblast | 9.12e-11 | 23 |
mesothelial cell | 2.22e-10 | 19 |
endothelial cell of vascular tree | 4.11e-09 | 24 |
squamous epithelial cell | 6.77e-09 | 63 |
aortic smooth muscle cell | 6.88e-09 | 10 |
somatic stem cell | 7.92e-09 | 433 |
multi fate stem cell | 8.30e-09 | 427 |
preadipocyte | 1.92e-08 | 12 |
stem cell | 5.48e-08 | 441 |
blood vessel endothelial cell | 1.02e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.02e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.34e-10 | 14 |