FFCP PHASE1:Hg19::chr20:26116339..26116381,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:26116339..26116381,- | |||
|description=CAGE_peak_at_chr20:26116339..26116381,- | |description=CAGE_peak_at_chr20:26116339..26116381,- | ||
|id=chr20:26116339..26116381,- | |id=chr20:26116339..26116381,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002553;7.46e-16;1!CL:0000082;1.77e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,8.63e-16,1;CL:0000082,1.77e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.93e-08;29!UBERON:0001041;5.44e-08;30 | |||
|ontology_enrichment_disease=DOID:162!4.68e-16!235;DOID:14566!1.43e-15!239;DOID:0050687!3.05e-12!143;DOID:1325!1.35e-11!7;DOID:3904!1.35e-11!7;DOID:0050686!2.04e-10!137;DOID:1036!1.24e-09!8;DOID:305!4.90e-09!106;DOID:1324!4.06e-08!15;DOID:1115!4.73e-08!20;DOID:0050615!1.37e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1325;3.41e-19;7!DOID:3904;3.41e-19;7!DOID:1324;1.01e-15;15!DOID:5409;2.07e-15;4!DOID:3905;4.46e-15;9!DOID:0050615;9.23e-15;16!DOID:3910;1.39e-08;2!DOID:1909;2.57e-08;2!DOID:3493;2.57e-08;2!DOID:3307;2.57e-08;2!DOID:1115;4.96e-07;20 | |||
|ontology_enrichment_disease_v019_2=DOID:1325,3.21e-19,7;DOID:3904,3.21e-19,7;DOID:1324,1.01e-15,15;DOID:5409,2.07e-15,4;DOID:3905,4.26e-15,9;DOID:0050615,9.23e-15,16;DOID:162,7.33e-09,235;DOID:14566,1.20e-08,239;DOID:3910,1.29e-08,2;DOID:3307,2.15e-08,2;DOID:3493,2.31e-08,2;DOID:1909,3.08e-08,2;DOID:0050686,1.75e-07,137;DOID:0050687,3.62e-07,143;DOID:1115,5.02e-07,20 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;1.77e-12;19!UBERON:0000115;1.77e-12;19!UBERON:0002048;8.18e-11;22!UBERON:0004807;8.18e-11;22!UBERON:0000117;8.18e-11;22!UBERON:0000171;8.18e-11;22!UBERON:0000170;8.18e-11;22!UBERON:0004903;1.39e-08;2!UBERON:0002173;1.39e-08;2!UBERON:0002186;1.39e-08;2!UBERON:0005911;4.68e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,1.77e-12,19;UBERON:0000115,1.77e-12,19;UBERON:0002048,8.18e-11,22;UBERON:0000117,8.18e-11,22;UBERON:0000171,8.18e-11,22;UBERON:0000170,8.18e-11,22;UBERON:0005597,8.18e-11,22;UBERON:0000118,8.18e-11,22;UBERON:0004903,1.29e-08,2;UBERON:0002173,1.29e-08,2;UBERON:0002186,1.29e-08,2;UBERON:0004807,1.51e-08,28;UBERON:0000945,5.18e-08,8;UBERON:0010039,5.18e-08,8;UBERON:0005178,4.50e-07,34;UBERON:0002224,4.50e-07,34;UBERON:0005181,7.08e-07,35 | |||
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|short_description=p@chr20:26116339..26116381,- | |short_description=p@chr20:26116339..26116381,- | ||
}} | }} |
Latest revision as of 12:44, 28 July 2015
Short description: | p@chr20:26116339..26116381, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:26116339..26116381, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 8.63e-16 | 1 |
epithelial cell of lung | 1.77e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 1.77e-12 | 19 |
lung epithelium | 1.77e-12 | 19 |
lung | 8.18e-11 | 22 |
respiratory tube | 8.18e-11 | 22 |
respiration organ | 8.18e-11 | 22 |
pair of lungs | 8.18e-11 | 22 |
lung primordium | 8.18e-11 | 22 |
lung bud | 8.18e-11 | 22 |
bronchoalveolar duct junction | 1.29e-08 | 2 |
alveolar duct | 1.29e-08 | 2 |
bronchiole | 1.29e-08 | 2 |
respiratory system epithelium | 1.51e-08 | 28 |
stomach | 5.18e-08 | 8 |
food storage organ | 5.18e-08 | 8 |
thoracic cavity element | 4.50e-07 | 34 |
thoracic cavity | 4.50e-07 | 34 |
thoracic segment organ | 7.08e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 3.21e-19 | 7 |
bronchogenic carcinoma | 3.21e-19 | 7 |
lung cancer | 1.01e-15 | 15 |
lung small cell carcinoma | 2.07e-15 | 4 |
lung carcinoma | 4.26e-15 | 9 |
respiratory system cancer | 9.23e-15 | 16 |
cancer | 7.33e-09 | 235 |
disease of cellular proliferation | 1.20e-08 | 239 |
lung adenocarcinoma | 1.29e-08 | 2 |
teratoma | 2.15e-08 | 2 |
signet ring cell adenocarcinoma | 2.31e-08 | 2 |
melanoma | 3.08e-08 | 2 |
organ system cancer | 1.75e-07 | 137 |
cell type cancer | 3.62e-07 | 143 |
sarcoma | 5.02e-07 | 20 |