FFCP PHASE1:Hg19::chr16:77449620..77449621,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:77449620..77449621,- | |||
|description=CAGE_peak_at_chr16:77449620..77449621,- | |description=CAGE_peak_at_chr16:77449620..77449621,- | ||
|id=chr16:77449620..77449621,- | |id=chr16:77449620..77449621,- | ||
|ontology_enrichment_celltype=CL:0002139!7.87e-17!24;CL:0005020!6.87e-16!6;CL:0002138!6.87e-16!6;CL:0005022!6.87e-16!6;CL:0002618!5.72e-12!3;CL:0000115!8.84e-11!35;CL:0002543!4.40e-10!6;CL:0002078!4.23e-08!44;CL:0000071!6.18e-07!18;CL:0002546!6.18e-07!18 | |ontology_enrichment_celltype=CL:0002139!7.87e-17!24;CL:0005020!6.87e-16!6;CL:0002138!6.87e-16!6;CL:0005022!6.87e-16!6;CL:0002618!5.72e-12!3;CL:0000115!8.84e-11!35;CL:0002543!4.40e-10!6;CL:0002078!4.23e-08!44;CL:0000071!6.18e-07!18;CL:0002546!6.18e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002138;5.43e-23;6!CL:0002545;9.86e-18;2!CL:0002139;3.86e-13;24!CL:0000115;1.52e-08;36!CL:0002544;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,4.34e-23,6;CL:0002138,4.34e-23,6;CL:0005022,4.34e-23,6;CL:0002545,1.27e-17,2;CL:0002139,3.78e-13,24;CL:0000115,5.14e-09,36;CL:0002078,2.38e-07,45;CL:0002544,9.49e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.97e-34;1!CL:0005022;5.43e-23;6!UBERON:0006215;1.96e-12;3!UBERON:0003056;2.74e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004732!3.51e-17!13;UBERON:0004733!3.03e-14!12;UBERON:0002028!3.03e-14!12;UBERON:0007277!3.03e-14!12;UBERON:0001473!7.93e-12!8;UBERON:0004536!7.93e-12!8;UBERON:0006558!7.93e-12!8;UBERON:0003076!3.48e-11!15;UBERON:0003057!3.48e-11!15;UBERON:0002298!7.09e-11!8;UBERON:0001049!2.76e-10!57;UBERON:0005068!2.76e-10!57;UBERON:0006241!2.76e-10!57;UBERON:0007135!2.76e-10!57;UBERON:0002680!3.79e-10!9;UBERON:0001895!3.79e-10!9;UBERON:0010092!3.79e-10!9;UBERON:0002616!7.87e-10!59;UBERON:0007023!1.70e-09!115;UBERON:0002465!2.19e-09!10;UBERON:0000955!5.72e-09!69;UBERON:0006238!5.72e-09!69;UBERON:0005162!1.61e-08!2;UBERON:0000122!1.61e-08!2;UBERON:0001017!4.25e-08!82;UBERON:0005743!1.46e-07!86;UBERON:0000073!1.51e-07!94;UBERON:0001016!1.51e-07!94;UBERON:0002066!2.47e-07!5;UBERON:0002346!3.11e-07!90;UBERON:0001986!6.18e-07!18;UBERON:0004638!6.18e-07!18;UBERON:0004852!6.18e-07!18;UBERON:0003075!9.61e-07!86;UBERON:0007284!9.61e-07!86 | |ontology_enrichment_uberon=UBERON:0004732!3.51e-17!13;UBERON:0004733!3.03e-14!12;UBERON:0002028!3.03e-14!12;UBERON:0007277!3.03e-14!12;UBERON:0001473!7.93e-12!8;UBERON:0004536!7.93e-12!8;UBERON:0006558!7.93e-12!8;UBERON:0003076!3.48e-11!15;UBERON:0003057!3.48e-11!15;UBERON:0002298!7.09e-11!8;UBERON:0001049!2.76e-10!57;UBERON:0005068!2.76e-10!57;UBERON:0006241!2.76e-10!57;UBERON:0007135!2.76e-10!57;UBERON:0002680!3.79e-10!9;UBERON:0001895!3.79e-10!9;UBERON:0010092!3.79e-10!9;UBERON:0002616!7.87e-10!59;UBERON:0007023!1.70e-09!115;UBERON:0002465!2.19e-09!10;UBERON:0000955!5.72e-09!69;UBERON:0006238!5.72e-09!69;UBERON:0005162!1.61e-08!2;UBERON:0000122!1.61e-08!2;UBERON:0001017!4.25e-08!82;UBERON:0005743!1.46e-07!86;UBERON:0000073!1.51e-07!94;UBERON:0001016!1.51e-07!94;UBERON:0002066!2.47e-07!5;UBERON:0002346!3.11e-07!90;UBERON:0001986!6.18e-07!18;UBERON:0004638!6.18e-07!18;UBERON:0004852!6.18e-07!18;UBERON:0003075!9.61e-07!86;UBERON:0007284!9.61e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.97e-34;1!UBERON:0001785;5.97e-34;1!UBERON:0002464;5.97e-34;1!UBERON:0004904;5.97e-34;1!UBERON:0001021;5.97e-34;1!UBERON:0003714;9.86e-18;2!UBERON:0005162;9.86e-18;2!UBERON:0000122;9.86e-18;2!UBERON:0005800;9.86e-18;2!UBERON:0001515;9.86e-18;2!UBERON:0001473;1.57e-17;8!UBERON:0004536;1.57e-17;8!UBERON:0006558;1.57e-17;8!UBERON:0002465;3.04e-14;10!UBERON:0004732;3.38e-11;13!UBERON:0002037;7.37e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,5.05e-34,1;UBERON:0001785,5.05e-34,1;UBERON:0002464,5.05e-34,1;UBERON:0004904,5.05e-34,1;UBERON:0001021,5.05e-34,1;UBERON:0003902,5.05e-34,1;UBERON:0005425,5.05e-34,1;UBERON:0003714,9.07e-18,2;UBERON:0005162,9.07e-18,2;UBERON:0000122,9.07e-18,2;UBERON:0005800,1.27e-17,2;UBERON:0001515,1.27e-17,2;UBERON:0001473,1.33e-17,8;UBERON:0004536,1.33e-17,8;UBERON:0006558,1.33e-17,8;UBERON:0002465,2.66e-14,10;UBERON:0004732,3.38e-11,13;UBERON:0001781,1.44e-09,4;UBERON:0002037,7.58e-07,6;UBERON:0006215,7.58e-07,6;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,3.35941786920128,1.77883131343355,0.33472061276467,0,0,0,1.10298924103761,0,0.892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,3.05163472634166,0.884634079449797,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.202203398942031,0,0,0,0,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0,0,0.221858103073705,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.203909198930495,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0.233939463462106,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,3.35941786920128,1.77883131343355,0.33472061276467,0,0,0,1.10298924103761,0,0.892997282840798,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,3.05163472634166,0.884634079449797,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.202203398942031,0,0,0,0,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0,0,0.221858103073705,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0.203909198930495,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0.233939463462106,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr16:77449620..77449621,- | |short_description=p@chr16:77449620..77449621,- | ||
}} | }} |
Latest revision as of 12:30, 25 July 2015
Short description: | p@chr16:77449620..77449621, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:77449620..77449621, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 4.34e-23 | 6 |
endothelial cell of lymphatic vessel | 4.34e-23 | 6 |
vascular lymphangioblast | 4.34e-23 | 6 |
thoracic aorta endothelial cell | 1.27e-17 | 2 |
endothelial cell of vascular tree | 3.78e-13 | 24 |
endothelial cell | 5.14e-09 | 36 |
meso-epithelial cell | 2.38e-07 | 45 |
aortic endothelial cell | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 5.05e-34 | 1 |
cranial nerve | 5.05e-34 | 1 |
nerve trunk | 5.05e-34 | 1 |
nerve connecting eye with brain | 5.05e-34 | 1 |
nerve | 5.05e-34 | 1 |
retinal neural layer | 5.05e-34 | 1 |
presumptive neural retina | 5.05e-34 | 1 |
neural tissue | 9.07e-18 | 2 |
multi cell component structure | 9.07e-18 | 2 |
neuron projection bundle | 9.07e-18 | 2 |
segment of aorta | 1.27e-17 | 2 |
thoracic aorta | 1.27e-17 | 2 |
lymphatic vessel | 1.33e-17 | 8 |
lymph vasculature | 1.33e-17 | 8 |
lymphatic part of lymphoid system | 1.33e-17 | 8 |
lymphoid system | 2.66e-14 | 10 |
segmental subdivision of nervous system | 3.38e-11 | 13 |
layer of retina | 1.44e-09 | 4 |
cerebellum | 7.58e-07 | 6 |
rhombic lip | 7.58e-07 | 6 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |