FFCP PHASE1:Hg19::chr3:45837959..45837973,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54716 | |EntrezGene=54716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |HGNC=30927 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000353278_5end | |association_with_transcript=0bp_to_ENST00000353278_5end | ||
|cluster_id=chr3:45837959..45837973,- | |||
|description=CAGE_peak_3_at_SLC6A20_5end | |description=CAGE_peak_3_at_SLC6A20_5end | ||
|id=chr3:45837959..45837973,- | |id=chr3:45837959..45837973,- | ||
|ontology_enrichment_celltype=CL:1000507!3.03e-10!12;CL:1000494!3.03e-10!12;CL:0002586!3.55e-08!3;CL:0000239!1.33e-07!3;CL:1000615!1.33e-07!3;CL:0002306!1.33e-07!3;CL:1000449!2.67e-07!16 | |ontology_enrichment_celltype=CL:1000507!3.03e-10!12;CL:1000494!3.03e-10!12;CL:0002586!3.55e-08!3;CL:0000239!1.33e-07!3;CL:1000615!1.33e-07!3;CL:0002306!1.33e-07!3;CL:1000449!2.67e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.07e-29;3!CL:0000149;3.11e-22;4!CL:0000147;9.88e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.34e-29,3;CL:0000149,2.25e-22,4;CL:0000147,9.05e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.17e-14;3!UBERON:0006242;3.76e-11;1!UBERON:0005425;1.15e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3111;1.15e-10;1!DOID:3603;1.15e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3111,1.77e-10,1;DOID:3603,1.77e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.62e-29!115;UBERON:0005743!8.21e-25!86;UBERON:0000073!1.89e-24!94;UBERON:0001016!1.89e-24!94;UBERON:0001049!1.28e-20!57;UBERON:0005068!1.28e-20!57;UBERON:0006241!1.28e-20!57;UBERON:0007135!1.28e-20!57;UBERON:0001017!1.10e-19!82;UBERON:0003075!4.42e-19!86;UBERON:0007284!4.42e-19!86;UBERON:0002346!8.20e-18!90;UBERON:0002616!8.91e-15!59;UBERON:0002780!1.88e-14!41;UBERON:0001890!1.88e-14!41;UBERON:0006240!1.88e-14!41;UBERON:0003080!5.44e-14!42;UBERON:0000955!6.65e-14!69;UBERON:0006238!6.65e-14!69;UBERON:0003056!3.02e-13!61;UBERON:0000489!3.20e-13!32;UBERON:0004121!1.16e-12!169;UBERON:0000924!4.14e-12!173;UBERON:0006601!4.14e-12!173;UBERON:0000153!1.45e-11!129;UBERON:0007811!1.45e-11!129;UBERON:0000033!6.98e-11!123;UBERON:0009773!3.03e-10!12;UBERON:0001231!3.03e-10!12;UBERON:0004810!3.03e-10!12;UBERON:0001893!1.25e-09!34;UBERON:0003296!3.99e-09!4;UBERON:0010133!3.99e-09!4;UBERON:0004876!7.61e-09!20;UBERON:0002113!9.17e-09!27;UBERON:0003918!9.17e-09!27;UBERON:0005095!9.17e-09!27;UBERON:0007687!9.17e-09!27;UBERON:0006555!1.09e-08!17;UBERON:0005103!1.09e-08!17;UBERON:0000083!1.09e-08!17;UBERON:0009201!1.09e-08!17;UBERON:0004819!1.09e-08!17;UBERON:0006553!1.09e-08!17;UBERON:0003074!1.09e-08!17;UBERON:0003060!1.09e-08!17;UBERON:0002791!1.30e-08!33;UBERON:0002619!1.32e-08!22;UBERON:0000966!2.77e-08!5;UBERON:0005388!2.77e-08!5;UBERON:0001802!2.77e-08!5;UBERON:0001781!3.55e-08!3;UBERON:0001782!3.55e-08!3;UBERON:0005424!3.55e-08!3;UBERON:0000080!4.20e-08!18;UBERON:0002120!4.20e-08!18;UBERON:0004875!4.20e-08!18;UBERON:0005721!4.20e-08!18;UBERON:0005754!4.20e-08!18;UBERON:0007297!4.20e-08!18;UBERON:0003076!4.84e-08!15;UBERON:0003057!4.84e-08!15;UBERON:0001950!6.81e-08!20;UBERON:0000064!7.78e-08!219;UBERON:0000481!8.33e-08!347;UBERON:0001896!1.02e-07!3;UBERON:0005290!1.02e-07!3;UBERON:0010096!1.02e-07!3;UBERON:0006853!1.33e-07!3;UBERON:0007685!1.33e-07!3;UBERON:0004134!1.33e-07!3;UBERON:0002240!1.36e-07!3;UBERON:0001869!1.62e-07!32;UBERON:0000062!1.84e-07!511;UBERON:0001894!2.21e-07!7;UBERON:0006222!2.21e-07!7;UBERON:0000956!2.45e-07!25;UBERON:0000203!2.45e-07!25;UBERON:0004211!2.67e-07!16;UBERON:0001285!2.67e-07!16;UBERON:0007684!2.67e-07!16;UBERON:0003220!2.67e-07!16;UBERON:0004208!2.67e-07!16;UBERON:0000025!3.52e-07!194;UBERON:0001872!5.24e-07!5;UBERON:0002020!5.80e-07!34;UBERON:0003528!5.80e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.20e-31;5!UBERON:0005388;3.20e-31;5!UBERON:0001802;3.20e-31;5!UBERON:0001781;2.07e-29;3!UBERON:0001782;2.07e-29;3!UBERON:0002108;9.09e-18;4!UBERON:0002104;5.52e-16;21!UBERON:0001032;6.14e-14;24!UBERON:0004456;6.14e-14;24!UBERON:0000160;3.60e-13;17!UBERON:0000970;6.29e-12;20!UBERON:0000941;1.15e-10;1!UBERON:0001785;1.15e-10;1!UBERON:0002464;1.15e-10;1!UBERON:0004904;1.15e-10;1!UBERON:0001021;1.15e-10;1!UBERON:0000020;2.35e-10;23!UBERON:0005409;2.79e-10;22!UBERON:0007625;1.93e-08;11!UBERON:0000019;2.20e-08;19!UBERON:0000047;2.20e-08;19!UBERON:0004088;2.20e-08;19!UBERON:0010230;2.20e-08;19!UBERON:0001456;1.34e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,5.04e-40,6;UBERON:0005388,5.04e-40,6;UBERON:0001802,5.04e-40,6;UBERON:0001781,1.75e-38,4;UBERON:0001782,1.34e-29,3;UBERON:0005424,1.34e-29,3;UBERON:0002108,1.11e-17,4;UBERON:0000970,4.90e-16,21;UBERON:0002104,4.90e-16,21;UBERON:0000020,5.54e-14,24;UBERON:0001032,5.54e-14,24;UBERON:0004456,5.54e-14,24;UBERON:0000160,4.04e-13,17;UBERON:0000019,5.61e-12,20;UBERON:0000047,5.61e-12,20;UBERON:0010312,5.61e-12,20;UBERON:0004088,5.61e-12,20;UBERON:0010230,5.61e-12,20;UBERON:0003072,5.61e-12,20;UBERON:0004128,5.61e-12,20;UBERON:0003071,5.61e-12,20;UBERON:0001456,7.07e-11,22;UBERON:0000941,1.10e-10,1;UBERON:0001785,1.10e-10,1;UBERON:0002464,1.10e-10,1;UBERON:0004904,1.10e-10,1;UBERON:0001021,1.10e-10,1;UBERON:0003902,1.10e-10,1;UBERON:0005425,1.10e-10,1;UBERON:0005409,4.81e-09,25;UBERON:0007625,1.72e-08,11;UBERON:0005085,1.13e-07,31 | |||
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|short_description=p3@SLC6A20 | |short_description=p3@SLC6A20 | ||
}} | }} |
Latest revision as of 09:22, 18 September 2015
Short description: | p3@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC6A20_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000353278_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.34e-29 | 3 |
visual pigment cell | 2.25e-22 | 4 |
pigment cell | 9.05e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
retina | 5.04e-40 | 6 |
photoreceptor array | 5.04e-40 | 6 |
posterior segment of eyeball | 5.04e-40 | 6 |
layer of retina | 1.75e-38 | 4 |
pigmented layer of retina | 1.34e-29 | 3 |
presumptive retinal pigmented epithelium | 1.34e-29 | 3 |
small intestine | 1.11e-17 | 4 |
eye | 4.90e-16 | 21 |
visual system | 4.90e-16 | 21 |
sense organ | 5.54e-14 | 24 |
sensory system | 5.54e-14 | 24 |
entire sense organ system | 5.54e-14 | 24 |
intestine | 4.04e-13 | 17 |
camera-type eye | 5.61e-12 | 20 |
simple eye | 5.61e-12 | 20 |
immature eye | 5.61e-12 | 20 |
ocular region | 5.61e-12 | 20 |
eyeball of camera-type eye | 5.61e-12 | 20 |
optic cup | 5.61e-12 | 20 |
optic vesicle | 5.61e-12 | 20 |
eye primordium | 5.61e-12 | 20 |
face | 7.07e-11 | 22 |
cranial nerve II | 1.10e-10 | 1 |
cranial nerve | 1.10e-10 | 1 |
nerve trunk | 1.10e-10 | 1 |
nerve connecting eye with brain | 1.10e-10 | 1 |
nerve | 1.10e-10 | 1 |
retinal neural layer | 1.10e-10 | 1 |
presumptive neural retina | 1.10e-10 | 1 |
gastrointestinal system | 4.81e-09 | 25 |
pigment epithelium of eye | 1.72e-08 | 11 |
ectodermal placode | 1.13e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 1.77e-10 | 1 |
mucinous cystadenocarcinoma | 1.77e-10 | 1 |