FFCP PHASE1:Hg19::chr1:6685228..6685270,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90326 | |EntrezGene=90326 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20855 | |HGNC=20855 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000307896,ENST00000377627,ENST00000484669,ENST00000484676_5end | |association_with_transcript=0bp_to_ENST00000307896,ENST00000377627,ENST00000484669,ENST00000484676_5end | ||
|cluster_id=chr1:6685228..6685270,+ | |||
|description=CAGE_peak_1_at_THAP3_5end | |description=CAGE_peak_1_at_THAP3_5end | ||
|id=chr1:6685228..6685270,+ | |id=chr1:6685228..6685270,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.66e-11!57;UBERON:0005068!2.66e-11!57;UBERON:0006241!2.66e-11!57;UBERON:0007135!2.66e-11!57;UBERON:0007023!3.95e-11!115;UBERON:0002346!4.72e-11!90;UBERON:0002616!1.20e-10!59;UBERON:0003075!4.16e-10!86;UBERON:0007284!4.16e-10!86;UBERON:0001017!2.52e-09!82;UBERON:0005743!3.00e-09!86;UBERON:0000955!6.00e-09!69;UBERON:0006238!6.00e-09!69;UBERON:0000073!1.32e-08!94;UBERON:0001016!1.32e-08!94;UBERON:0002020!2.78e-08!34;UBERON:0003528!2.78e-08!34;UBERON:0002791!7.84e-08!33;UBERON:0001893!1.11e-07!34;UBERON:0003080!1.41e-07!42;UBERON:0002780!4.26e-07!41;UBERON:0001890!4.26e-07!41;UBERON:0006240!4.26e-07!41;UBERON:0001869!4.59e-07!32;UBERON:0000924!5.48e-07!173;UBERON:0006601!5.48e-07!173;UBERON:0000064!5.58e-07!219;UBERON:0003056!6.41e-07!61;UBERON:0000153!9.16e-07!129;UBERON:0007811!9.16e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.78e-07;34!UBERON:0002020;2.78e-07;34!UBERON:0002791;3.50e-07;32!UBERON:0001893;7.19e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.05e-11,86;UBERON:0007023,7.81e-11,114;UBERON:0001049,8.79e-11,56;UBERON:0005068,8.79e-11,56;UBERON:0006241,8.79e-11,56;UBERON:0007135,8.79e-11,56;UBERON:0003075,1.88e-10,82;UBERON:0007284,1.88e-10,82;UBERON:0000073,2.70e-10,53;UBERON:0002616,2.70e-10,53;UBERON:0001017,6.73e-09,81;UBERON:0000955,1.66e-08,68;UBERON:0006238,1.66e-08,68;UBERON:0003528,2.78e-08,34;UBERON:0002020,2.78e-08,34;UBERON:0001016,3.03e-08,89;UBERON:0010314,6.26e-08,132;UBERON:0010371,6.87e-08,104;UBERON:0001893,1.11e-07,34;UBERON:0002791,1.32e-07,32;UBERON:0002780,4.26e-07,41;UBERON:0001890,4.26e-07,41;UBERON:0003080,4.26e-07,41;UBERON:0006240,4.26e-07,41;UBERON:0001869,4.59e-07,32;UBERON:0004121,6.73e-07,171;UBERON:0000924,6.73e-07,171;UBERON:0006601,6.73e-07,171;UBERON:0003056,7.93e-07,61 | |||
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| ||
|short_description=p1@THAP3 | |short_description=p1@THAP3 | ||
}} | }} |
Latest revision as of 00:54, 19 September 2015
Short description: | p1@THAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_THAP3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000307896, ENST00000377627, ENST00000484669, ENST00000484676_5end |
EntrezGene: | THAP3 |
HGNC: | 20855 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.05e-11 | 86 |
adult organism | 7.81e-11 | 114 |
neural tube | 8.79e-11 | 56 |
neural rod | 8.79e-11 | 56 |
future spinal cord | 8.79e-11 | 56 |
neural keel | 8.79e-11 | 56 |
neural plate | 1.88e-10 | 82 |
presumptive neural plate | 1.88e-10 | 82 |
regional part of nervous system | 2.70e-10 | 53 |
regional part of brain | 2.70e-10 | 53 |
central nervous system | 6.73e-09 | 81 |
brain | 1.66e-08 | 68 |
future brain | 1.66e-08 | 68 |
brain grey matter | 2.78e-08 | 34 |
gray matter | 2.78e-08 | 34 |
nervous system | 3.03e-08 | 89 |
structure with developmental contribution from neural crest | 6.26e-08 | 132 |
ecto-epithelium | 6.87e-08 | 104 |
telencephalon | 1.11e-07 | 34 |
regional part of telencephalon | 1.32e-07 | 32 |
regional part of forebrain | 4.26e-07 | 41 |
forebrain | 4.26e-07 | 41 |
anterior neural tube | 4.26e-07 | 41 |
future forebrain | 4.26e-07 | 41 |
cerebral hemisphere | 4.59e-07 | 32 |
ectoderm-derived structure | 6.73e-07 | 171 |
ectoderm | 6.73e-07 | 171 |
presumptive ectoderm | 6.73e-07 | 171 |
pre-chordal neural plate | 7.93e-07 | 61 |