FFCP PHASE1:Hg19::chr13:109809587..109809590,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr13:109809587..109809590,-
|short_description=p@chr13:109809587..109809590,-
|description=CAGE_peak_at_chr13:109809587..109809590,-
|association_with_transcri...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:109809587..109809590,- | |||
|description=CAGE_peak_at_chr13:109809587..109809590,- | |||
|id=chr13:109809587..109809590,- | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-10!254;CL:0002621!1.97e-09!3;CL:0002251!3.34e-09!21;CL:0000076!1.89e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0000047;7.05e-34;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.47e-09,8 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.39e-66;1!UBERON:0008814;3.61e-34;2!UBERON:0010056;3.61e-34;2!UBERON:0003056;3.27e-23;3 | |||
|ontology_enrichment_disease=DOID:305!1.57e-10!106;DOID:1749!4.10e-09!14;DOID:0050687!2.19e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!1.97e-09!3;UBERON:0003729!2.50e-09!5;UBERON:0000344!4.43e-08!12;UBERON:0003343!2.58e-07!4;UBERON:0004785!2.58e-07!4;UBERON:0000064!6.02e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.39e-66;1!UBERON:0001785;2.39e-66;1!UBERON:0002464;2.39e-66;1!UBERON:0004904;2.39e-66;1!UBERON:0001021;2.39e-66;1!UBERON:0003714;5.04e-34;2!UBERON:0005162;5.04e-34;2!UBERON:0000122;5.04e-34;2!UBERON:0001723;2.62e-23;3!UBERON:0001033;2.62e-23;3!UBERON:0003343;7.35e-18;4!UBERON:0004785;7.35e-18;4!UBERON:0000974;2.19e-12;6!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24!UBERON:0000010;1.12e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.39e-66,1;UBERON:0001785,2.39e-66,1;UBERON:0002464,2.39e-66,1;UBERON:0004904,2.39e-66,1;UBERON:0001021,2.39e-66,1;UBERON:0003902,2.39e-66,1;UBERON:0005425,2.39e-66,1;UBERON:0003714,5.04e-34,2;UBERON:0005162,5.04e-34,2;UBERON:0000122,5.04e-34,2;UBERON:0001723,2.62e-23,3;UBERON:0001033,2.62e-23,3;UBERON:0010056,2.62e-23,3;UBERON:0003343,7.35e-18,4;UBERON:0004785,7.35e-18,4;UBERON:0001781,8.69e-18,4;UBERON:0000966,2.45e-12,6;UBERON:0005388,2.45e-12,6;UBERON:0001802,2.45e-12,6;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24;UBERON:0000010,1.12e-08,8;UBERON:0000974,5.73e-08,10;UBERON:0001042,5.73e-08,10;UBERON:0009145,5.73e-08,10;UBERON:0006562,2.32e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0.10893846351899,0.139423744278603,0,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0.114536596165916,0.171594997861965,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0.35857467866569,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0.358177682162975,0,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0.196295437002051,0.353909170043221,0,3.00366731990879,0,0,0,0,0,0,0,0.327543835020193,0.295712172434091,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0.250707539292375,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0.10893846351899,0.139423744278603,0,0,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,0,0.114536596165916,0.171594997861965,0.14405479798815,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0.35857467866569,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0.358177682162975,0,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,0.845248493434508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.85538840518309,0.196295437002051,0.353909170043221,0,3.00366731990879,0,0,0,0,0,0,0,0.327543835020193,0.295712172434091,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0.250707539292375,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:109809587..109809590,- | |||
}} | }} |
Latest revision as of 14:26, 24 July 2015
Short description: | p@chr13:109809587..109809590, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:109809587..109809590, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.47e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.39e-66 | 1 |
cranial nerve | 2.39e-66 | 1 |
nerve trunk | 2.39e-66 | 1 |
nerve connecting eye with brain | 2.39e-66 | 1 |
nerve | 2.39e-66 | 1 |
retinal neural layer | 2.39e-66 | 1 |
presumptive neural retina | 2.39e-66 | 1 |
neural tissue | 5.04e-34 | 2 |
multi cell component structure | 5.04e-34 | 2 |
neuron projection bundle | 5.04e-34 | 2 |
tongue | 2.62e-23 | 3 |
gustatory system | 2.62e-23 | 3 |
future tongue | 2.62e-23 | 3 |
mucosa of oral region | 7.35e-18 | 4 |
respiratory system mucosa | 7.35e-18 | 4 |
layer of retina | 8.69e-18 | 4 |
retina | 2.45e-12 | 6 |
photoreceptor array | 2.45e-12 | 6 |
posterior segment of eyeball | 2.45e-12 | 6 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
peripheral nervous system | 1.12e-08 | 8 |
neck | 5.73e-08 | 10 |
chordate pharynx | 5.73e-08 | 10 |
pharyngeal region of foregut | 5.73e-08 | 10 |
pharynx | 2.32e-07 | 11 |