FFCP PHASE1:Hg19::chr21:47421885..47421916,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-486bp_to_ENST00000486023,uc002zhw.1_5end | |association_with_transcript=-486bp_to_ENST00000486023,uc002zhw.1_5end | ||
|cluster_id=chr21:47421885..47421916,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_9_at_COL6A1_5end | |description=CAGE_peak_9_at_COL6A1_5end | ||
|id=chr21:47421885..47421916,+ | |id=chr21:47421885..47421916,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.50e-44!180;CL:0000057!1.74e-26!75;CL:0000680!1.10e-16!57;CL:0000056!1.10e-16!57;CL:0000355!1.10e-16!57;CL:0000187!6.73e-16!54;CL:0000183!3.65e-15!59;CL:0000393!9.15e-14!60;CL:0000211!9.15e-14!60;CL:0000192!1.03e-12!42;CL:0000514!1.03e-12!42;CL:0000048!1.65e-11!430;CL:0000034!1.15e-10!444;CL:0000723!1.47e-10!436;CL:0002620!3.34e-09!23;CL:0000359!1.12e-08!32;CL:0000499!1.38e-07!27;CL:0002334!4.05e-07!12;CL:0000327!8.53e-07!14;CL:0002570!9.18e-07!8 | |ontology_enrichment_celltype=CL:0000055!2.50e-44!180;CL:0000057!1.74e-26!75;CL:0000680!1.10e-16!57;CL:0000056!1.10e-16!57;CL:0000355!1.10e-16!57;CL:0000187!6.73e-16!54;CL:0000183!3.65e-15!59;CL:0000393!9.15e-14!60;CL:0000211!9.15e-14!60;CL:0000192!1.03e-12!42;CL:0000514!1.03e-12!42;CL:0000048!1.65e-11!430;CL:0000034!1.15e-10!444;CL:0000723!1.47e-10!436;CL:0002620!3.34e-09!23;CL:0000359!1.12e-08!32;CL:0000499!1.38e-07!27;CL:0002334!4.05e-07!12;CL:0000327!8.53e-07!14;CL:0002570!9.18e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000499;2.88e-09;28!CL:0002570;7.06e-09;8!CL:0000057;7.36e-09;73!CL:0002320;1.33e-08;188!CL:0000723;2.23e-08;61!CL:0000192;5.96e-08;43!CL:0000187;7.55e-08;55!CL:0000393;1.09e-07;61!CL:0000211;1.09e-07;61!CL:0002559;1.28e-07;5!CL:0002552;2.27e-07;5!CL:0000134;2.29e-07;55!CL:0000048;5.81e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.52e-21,76;CL:0000048,7.88e-16,427;CL:0000723,3.58e-15,433;CL:0000034,2.50e-14,441;CL:0000187,5.57e-13,55;CL:0000680,7.14e-13,58;CL:0000056,7.14e-13,58;CL:0000355,7.14e-13,58;CL:0000393,7.11e-11,61;CL:0000211,7.11e-11,61;CL:0002320,6.74e-10,361;CL:0000192,7.56e-10,43;CL:0000514,7.56e-10,43;CL:0000499,2.58e-09,28;CL:0002570,6.04e-09,8;CL:0002559,5.76e-08,5;CL:0000134,2.38e-07,354;CL:0002552,2.87e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;5.96e-08;43!CL:0000355;6.45e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;7.34e-07;5!DOID:450;7.34e-07;5!DOID:66;7.34e-07;5!DOID:423;7.34e-07;5!DOID:0080000;7.34e-07;5!DOID:11722;7.34e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.67e-07,5;DOID:450,6.67e-07,5;DOID:66,6.67e-07,5;DOID:423,6.67e-07,5;DOID:0080000,6.67e-07,5;DOID:11722,6.67e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.47e-22!83;UBERON:0002329!6.47e-22!83;UBERON:0003077!6.47e-22!83;UBERON:0003059!6.47e-22!83;UBERON:0007282!6.47e-22!83;UBERON:0009618!6.47e-22!83;UBERON:0007285!6.47e-22!83;UBERON:0004290!1.32e-19!70;UBERON:0005256!3.26e-16!143;UBERON:0002385!5.97e-16!63;UBERON:0001015!5.97e-16!63;UBERON:0000383!5.97e-16!63;UBERON:0001134!7.48e-16!61;UBERON:0002036!7.48e-16!61;UBERON:0003082!7.48e-16!61;UBERON:0000486!9.96e-16!82;UBERON:0003102!3.71e-12!95;UBERON:0000475!6.12e-12!365;UBERON:0002100!1.10e-11!216;UBERON:0002199!1.39e-09!45;UBERON:0002416!1.39e-09!45;UBERON:0003104!4.72e-09!238;UBERON:0009142!4.72e-09!238;UBERON:0002097!5.77e-08!40;UBERON:0000481!1.04e-07!347 | |ontology_enrichment_uberon=UBERON:0000914!6.47e-22!83;UBERON:0002329!6.47e-22!83;UBERON:0003077!6.47e-22!83;UBERON:0003059!6.47e-22!83;UBERON:0007282!6.47e-22!83;UBERON:0009618!6.47e-22!83;UBERON:0007285!6.47e-22!83;UBERON:0004290!1.32e-19!70;UBERON:0005256!3.26e-16!143;UBERON:0002385!5.97e-16!63;UBERON:0001015!5.97e-16!63;UBERON:0000383!5.97e-16!63;UBERON:0001134!7.48e-16!61;UBERON:0002036!7.48e-16!61;UBERON:0003082!7.48e-16!61;UBERON:0000486!9.96e-16!82;UBERON:0003102!3.71e-12!95;UBERON:0000475!6.12e-12!365;UBERON:0002100!1.10e-11!216;UBERON:0002199!1.39e-09!45;UBERON:0002416!1.39e-09!45;UBERON:0003104!4.72e-09!238;UBERON:0009142!4.72e-09!238;UBERON:0002097!5.77e-08!40;UBERON:0000481!1.04e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.48e-09;198!UBERON:0001013;1.30e-08;14!UBERON:0002073;1.28e-07;5!UBERON:0002199;2.01e-07;46!UBERON:0002416;2.01e-07;46!UBERON:0000075;8.92e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.01e-15,73;UBERON:0002329,6.63e-15,71;UBERON:0003059,6.63e-15,71;UBERON:0007282,6.63e-15,71;UBERON:0004290,6.63e-15,71;UBERON:0009618,6.63e-15,71;UBERON:0003077,1.51e-14,72;UBERON:0007285,1.51e-14,72;UBERON:0003104,1.61e-14,160;UBERON:0009142,1.61e-14,160;UBERON:0005256,6.81e-14,122;UBERON:0003102,1.07e-12,99;UBERON:0007503,1.30e-12,78;UBERON:0001134,1.93e-12,62;UBERON:0002036,1.93e-12,62;UBERON:0003082,1.93e-12,62;UBERON:0000486,3.78e-12,83;UBERON:0002385,8.98e-12,64;UBERON:0001015,8.98e-12,64;UBERON:0000383,8.98e-12,64;UBERON:0002199,8.14e-11,46;UBERON:0002416,8.14e-11,46;UBERON:0002384,6.30e-10,371;UBERON:0001013,8.18e-09,14;UBERON:0002097,4.81e-08,41;UBERON:0002073,5.76e-08,5;UBERON:0005086,5.76e-08,5;UBERON:0000490,2.11e-07,148;UBERON:0002204,5.83e-07,167;UBERON:0011135,6.00e-07,5;UBERON:0002216,6.00e-07,5;UBERON:0011134,6.00e-07,5;UBERON:0002209,6.00e-07,5;UBERON:0002213,6.00e-07,5;UBERON:0005856,6.00e-07,5;UBERON:0005866,6.00e-07,5;UBERON:0005863,6.00e-07,5;UBERON:0007844,6.00e-07,5;UBERON:0011138,6.00e-07,5;UBERON:0001130,6.00e-07,5;UBERON:0001066,6.00e-07,5;UBERON:0001468,6.00e-07,5;UBERON:0000075,6.36e-07,16 | |||
|phase1_expression=0.54503513781167,3.8538094300377,1.26858963686374,3.00219895059391,0.446961094427288,0,0,1.89515962028049,2.61185628199839,0,0,0,0,2.10402800032079,2.31978163009541,2.01697543935533,1.20538905604795,1.46062018077475,1.46379839637152,0.61560529038394,1.22400414746552,0.940364164434263,0.286235987131057,0.410623275218653,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0,0.639312809217652,1.44575660953827,3.00802746381534,1.88300474649071,1.5905718941022,4.86634870302636,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.759783069987479,1.19168262731897,3.72887606973458,0,1.68203280042692,1.06748995729705,0.98667019366864,0.622422070799533,0.942974704487816,0.653847612453835,1.05950199351452,3.45705554687999,0.937285727335186,0.624320153660641,1.71141546463335,1.64393548606981,0.23486899728753,0.485618833104395,0.702254033511242,2.04154171254893,1.59684612505298,2.06651562351531,2.37600571456411,7.17074094907815,0.910161361938026,5.03032699271367,0.168336113954066,1.7516592782075,0.277064115484183,1.31693286264251,3.37136575378922,3.45547535485173,0.340296549480063,1.25572744982203,3.20336083227851,2.96704661623387,2.10063767259082,1.75189299705346,1.03056216018252,0.744467425326359,2.02531598689519,0.68205903612839,0.757301322732344,1.74894807420369,5.01102776138317,1.06502877754984,0.604512589365842,0.67824236924195,0,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0.518305275076852,0.252320850875628,0,4.69348596989448,10.2918550110862,2.76269842704961,1.85747171212792,2.88751792667834,0,0,0,0,0,0,0,0,0,0,5.60967095213783,2.8810180793198,4.41026134156626,0,0,0.590789906681404,0,0,0,0,0,0,0,0.977424915930974,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0.205654985406647,0,0,0.560655421726804,0.87192013766656,0.95339771567235,0.904902010304444,10.7296933755565,3.381211010224,0.531876233169741,1.04007436911366,1.02882949704857,1.41849132023278,0.266422179016099,3.0025378668211,2.17048642156577,1.64648067356154,0.977208552881205,1.06617584622764,0,0,0,0.199945982364114,0,0,0,0.958499421966331,0,0,1.59259437334337,0.821905290201534,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.96306386750624,2.00068208423871,1.89885516589815,1.45579603071565,1.42743191037729,0.630809660135739,0.35142424497814,0.902838299183157,4.5481500811197,2.0694614258501,0,0.921845842708516,1.39013783148933,2.34961388955289,2.05886054286514,0,0,0,0,0,0,0.992431231275107,0.61384789315225,2.80660094433074,0.640695746278505,0.511707249066704,1.28683136914886,1.48418066444991,3.70103265126373,4.79416658345443,1.23190734020714,6.23105315020345,1.62694529843943,0.120859449591622,0,0,1.03333003348146,3.82391452814106,3.40923478894503,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0.574265537996172,1.95018073810956,6.42735719376638,2.70678011217942,0.924291702687866,1.38153307253517,0.551346289938122,1.71872391789238,2.46528379654188,1.36362603865761,1.51354460599453,0,0,0,0,0,2.20368642781448,0.6970372701606,2.7723022215848,0,0,1.8532421910392,0,0.372158369359667,0.316379424718726,1.5250415513906,0.511795582622668,0.855877976067841,1.90921948755562,2.35484592059769,0.179872457583315,1.37268514868027,1.53156123049392,0.808729926293264,1.58510321173008,0.842516912477962,0.975267478179181,0.487426979262569,4.22600587027022,2.18399858252777,2.82810863907426,4.52032466480971,1.10273068709225,1.99031692572366,0.438450885253763,1.73632660280006,4.59126326432643,0.811641507850816,1.54911749049875,0.845086807596724,0.286822704408103,0.589494246078727,0,1.06428319221179,2.11107635297664,0.987884678879706,0.75894634753143,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0.111443384277478,0,0.95497793895076,0,0.307160702099232,0,0,0,0,0.211125408127993,0.996239941255349,0.276283915531148,0,0,0,1.55519793830904,0,0,0,1.1837208676432,0,1.11136990144637,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0,0,0,1.00035336054936,0.113942055847001,0,0,0,0.638002319463839,0.641183153813036,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.176915129006678,0,0,0,0,0,1.60515529459758,0,0,0,0.242780379534093,0.394584402849391,0,0.30607276163049,0.252746318513952,0,0,0.664653872707185,0.330991955875499,0.313932918407225,0,0.284609546029793,0,0,0,0,1.7472666824203,1.20390222730132,0,0,0,0.290967049465258,0,0,0,0,0,0,0.160317640503067,0.426905989478705,0.599428828746391,0,0,0,0,0,0,0.407712618220842,0.2092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| 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| ||
|short_description=p9@COL6A1 | |short_description=p9@COL6A1 | ||
}} | }} |
Latest revision as of 22:11, 18 September 2015
Short description: | p9@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -486bp_to_ENST00000486023, uc002zhw.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.52e-21 | 76 |
multi fate stem cell | 7.88e-16 | 427 |
somatic stem cell | 3.58e-15 | 433 |
stem cell | 2.50e-14 | 441 |
muscle cell | 5.57e-13 | 55 |
muscle precursor cell | 7.14e-13 | 58 |
myoblast | 7.14e-13 | 58 |
multi-potent skeletal muscle stem cell | 7.14e-13 | 58 |
electrically responsive cell | 7.11e-11 | 61 |
electrically active cell | 7.11e-11 | 61 |
connective tissue cell | 6.74e-10 | 361 |
smooth muscle cell | 7.56e-10 | 43 |
smooth muscle myoblast | 7.56e-10 | 43 |
stromal cell | 2.58e-09 | 28 |
mesenchymal stem cell of adipose | 6.04e-09 | 8 |
hair follicle cell | 5.76e-08 | 5 |
mesenchymal cell | 2.38e-07 | 354 |
fibroblast of gingiva | 2.87e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.67e-07 | 5 |
myotonic disease | 6.67e-07 | 5 |
muscle tissue disease | 6.67e-07 | 5 |
myopathy | 6.67e-07 | 5 |
muscular disease | 6.67e-07 | 5 |
myotonic dystrophy | 6.67e-07 | 5 |