FFCP PHASE1:Hg19::chr14:22962898..22962925,+: Difference between revisions
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|id=chr14:22962898..22962925,+
|short_description=p1@TRAJ45
|description=CAGE_peak_1_at_TRAJ45_5end
|association_with_transcript=0bp_to_ENST00000390492,uc001weo.2_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12076 | |HGNC=12076 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390492,uc001weo.2_5end | |||
|cluster_id=chr14:22962898..22962925,+ | |||
|coexpression_cluster_id=C2287 | |||
|description=CAGE_peak_1_at_TRAJ45_5end | |||
|id=chr14:22962898..22962925,+ | |||
|ontology_enrichment_celltype=CL:0000791!6.85e-29!18;CL:0000789!6.85e-29!18;CL:0002420!6.85e-29!18;CL:0002419!6.85e-29!18;CL:0000790!6.85e-29!18;CL:0000542!5.40e-27!53;CL:0000051!5.40e-27!53;CL:0000838!6.82e-26!52;CL:0000084!8.13e-22!25;CL:0000827!8.13e-22!25;CL:0000625!4.88e-17!11;CL:0000738!2.96e-16!140;CL:0002087!4.26e-14!119;CL:0000624!1.58e-11!6;CL:0002031!2.08e-11!124;CL:0000037!6.17e-11!172;CL:0000566!6.17e-11!172;CL:0002032!9.56e-10!165;CL:0000837!9.56e-10!165;CL:0000988!1.08e-09!182;CL:0000898!3.12e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.44e-28;18!CL:0000789;4.44e-28;18!CL:0002419;4.44e-28;18!CL:0000084;1.05e-22;25!CL:0000625;2.89e-16;11!CL:0000898;2.65e-12;3!CL:0000542;1.30e-11;53!CL:0000624;3.22e-10;6!CL:0000815;6.62e-09;2!CL:0000792;6.62e-09;2!CL:0002677;6.62e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.82e-28,18;CL:0000789,6.82e-28,18;CL:0002420,6.82e-28,18;CL:0002419,6.82e-28,18;CL:0000790,6.82e-28,18;CL:0000838,1.25e-23,52;CL:0000542,4.36e-23,53;CL:0000051,4.36e-23,53;CL:0000084,1.52e-22,25;CL:0000827,1.52e-22,25;CL:0000625,3.56e-16,11;CL:0000898,3.72e-12,3;CL:0000624,3.96e-10,6;CL:0002087,6.22e-10,115;CL:0000815,7.29e-09,2;CL:0000792,7.29e-09,2;CL:0002677,7.29e-09,2;CL:0000893,9.52e-09,2;CL:0002489,9.52e-09,2;CL:0000809,9.52e-09,2;CL:0000808,9.52e-09,2;CL:0000894,9.52e-09,2;CL:0000806,9.52e-09,2;CL:0000807,9.52e-09,2;CL:0000805,9.52e-09,2;CL:0002425,9.52e-09,2;CL:0002031,2.51e-08,120;CL:0000738,1.22e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000790;4.44e-28;18!CL:0000051;1.30e-11;53!CL:0002425;7.42e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.13e-13!7;UBERON:0000178!1.97e-13!15;UBERON:0000179!1.97e-13!15;UBERON:0000463!1.97e-13!15;UBERON:0007023!1.67e-10!115;UBERON:0002370!9.01e-09!4;UBERON:0005058!9.01e-09!4;UBERON:0009113!9.01e-09!4;UBERON:0003295!9.01e-09!4;UBERON:0005562!9.01e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.43e-13;15!UBERON:0000179;1.43e-13;15!UBERON:0000463;1.43e-13;15!UBERON:0004177;1.01e-11;5!UBERON:0005057;1.01e-11;5!UBERON:0002390;1.02e-11;32!UBERON:0002193;5.75e-08;42!UBERON:0002370;6.33e-08;2!UBERON:0005058;6.33e-08;2!UBERON:0009113;6.33e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.80e-18,7;UBERON:0005057,1.80e-18,7;UBERON:0002370,5.07e-15,4;UBERON:0005058,5.07e-15,4;UBERON:0009113,5.07e-15,4;UBERON:0003295,5.07e-15,4;UBERON:0005562,5.07e-15,4;UBERON:0000178,1.05e-13,15;UBERON:0000179,1.05e-13,15;UBERON:0000463,1.05e-13,15;UBERON:0003351,4.90e-10,6;UBERON:0001042,6.36e-09,10;UBERON:0009145,6.36e-09,10;UBERON:0006562,4.41e-08,11 | |||
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| ||
|short_description=p1@TRAJ45 | |||
}} | }} |
Latest revision as of 06:12, 19 September 2015
Short description: | p1@TRAJ45 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAJ45_5end |
Coexpression cluster: | C2287_NK_CD4_CD8_plasma_anaplastic_B_lymphoma |
Association with transcript: | 0bp_to_ENST00000390492, uc001weo.2_5end |
EntrezGene: | NA |
HGNC: | 12076 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.82e-28 | 18 |
alpha-beta T cell | 6.82e-28 | 18 |
immature T cell | 6.82e-28 | 18 |
mature T cell | 6.82e-28 | 18 |
immature alpha-beta T cell | 6.82e-28 | 18 |
lymphoid lineage restricted progenitor cell | 1.25e-23 | 52 |
lymphocyte | 4.36e-23 | 53 |
common lymphoid progenitor | 4.36e-23 | 53 |
T cell | 1.52e-22 | 25 |
pro-T cell | 1.52e-22 | 25 |
CD8-positive, alpha-beta T cell | 3.56e-16 | 11 |
naive T cell | 3.72e-12 | 3 |
CD4-positive, alpha-beta T cell | 3.96e-10 | 6 |
nongranular leukocyte | 6.22e-10 | 115 |
regulatory T cell | 7.29e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 7.29e-09 | 2 |
naive regulatory T cell | 7.29e-09 | 2 |
thymocyte | 9.52e-09 | 2 |
double negative thymocyte | 9.52e-09 | 2 |
double-positive, alpha-beta thymocyte | 9.52e-09 | 2 |
DN4 thymocyte | 9.52e-09 | 2 |
DN1 thymic pro-T cell | 9.52e-09 | 2 |
DN2 thymocyte | 9.52e-09 | 2 |
DN3 thymocyte | 9.52e-09 | 2 |
immature single positive thymocyte | 9.52e-09 | 2 |
early T lineage precursor | 9.52e-09 | 2 |
hematopoietic lineage restricted progenitor cell | 2.51e-08 | 120 |
leukocyte | 1.22e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.80e-18 | 7 |
immune organ | 1.80e-18 | 7 |
thymus | 5.07e-15 | 4 |
hemolymphoid system gland | 5.07e-15 | 4 |
thymic region | 5.07e-15 | 4 |
pharyngeal gland | 5.07e-15 | 4 |
thymus primordium | 5.07e-15 | 4 |
blood | 1.05e-13 | 15 |
haemolymphatic fluid | 1.05e-13 | 15 |
organism substance | 1.05e-13 | 15 |
pharyngeal epithelium | 4.90e-10 | 6 |
chordate pharynx | 6.36e-09 | 10 |
pharyngeal region of foregut | 6.36e-09 | 10 |
pharynx | 4.41e-08 | 11 |