FFCP PHASE1:Hg19::chr5:112539005..112539020,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4163 | |EntrezGene=4163 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6935 | |HGNC=6935 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000506605_5end | |association_with_transcript=0bp_to_ENST00000506605_5end | ||
|cluster_id=chr5:112539005..112539020,- | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_4_at_MCC_5end | |description=CAGE_peak_4_at_MCC_5end | ||
|id=chr5:112539005..112539020,- | |id=chr5:112539005..112539020,- | ||
|ontology_enrichment_celltype=CL:0000148!3.60e-15!10;CL:0000541!3.60e-15!10;CL:0000147!7.69e-12!14;CL:0000333!1.31e-11!41;CL:0000133!1.83e-08!59;CL:0000221!7.00e-08!71;CL:0000710!3.60e-07!20 | |ontology_enrichment_celltype=CL:0000148!3.60e-15!10;CL:0000541!3.60e-15!10;CL:0000147!7.69e-12!14;CL:0000333!1.31e-11!41;CL:0000133!1.83e-08!59;CL:0000221!7.00e-08!71;CL:0000710!3.60e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.15e-35;10!CL:0000147;3.85e-25;14!CL:0002567;2.66e-18;3!CL:0000710;3.10e-17;20!CL:0000075;1.89e-12;27!CL:0002077;6.84e-09;34!CL:0002605;3.90e-08;3!CL:0000243;4.18e-08;15!CL:0000125;4.18e-08;15!CL:0000039;1.42e-07;7!CL:0000586;1.42e-07;7!CL:0000128;1.76e-07;7!CL:0000126;1.76e-07;7!CL:0000127;1.76e-07;7!CL:0000095;3.18e-07;17!CL:0002566;4.01e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.13e-35,10;CL:0000541,1.13e-35,10;CL:0000147,3.80e-25,14;CL:0000333,5.06e-23,41;CL:0002567,2.75e-18,3;CL:0000710,3.07e-17,20;CL:0000133,2.33e-15,59;CL:0000075,1.88e-12,27;CL:0000221,3.77e-12,72;CL:0002077,1.23e-09,34;CL:0000243,4.09e-08,15;CL:0000125,4.09e-08,15;CL:0000030,4.09e-08,15;CL:0000339,4.09e-08,15;CL:0002605,4.20e-08,3;CL:0000039,1.32e-07,7;CL:0000586,1.32e-07,7;CL:0000128,1.70e-07,7;CL:0000126,1.70e-07,7;CL:0000127,1.70e-07,7;CL:0002453,1.70e-07,7;CL:0000095,3.12e-07,17;CL:0000123,3.12e-07,17;CL:0002566,4.25e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000133;5.18e-10;59!UBERON:0003056;9.24e-09;3!CL:0000339;4.18e-08;15!UBERON:0004140;4.01e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.46e-10!115;UBERON:0000033!9.20e-10!123;UBERON:0005743!1.21e-09!86;UBERON:0000153!1.91e-09!129;UBERON:0007811!1.91e-09!129;UBERON:0000073!2.17e-09!94;UBERON:0001016!2.17e-09!94;UBERON:0001017!6.37e-09!82;UBERON:0000924!7.51e-09!173;UBERON:0006601!7.51e-09!173;UBERON:0003075!7.76e-09!86;UBERON:0007284!7.76e-09!86;UBERON:0004121!8.28e-09!169;UBERON:0002346!8.99e-09!90;UBERON:0000955!3.92e-08!69;UBERON:0006238!3.92e-08!69;UBERON:0001049!1.11e-07!57;UBERON:0005068!1.11e-07!57;UBERON:0006241!1.11e-07!57;UBERON:0007135!1.11e-07!57;UBERON:0002616!3.96e-07!59 | |ontology_enrichment_uberon=UBERON:0007023!8.46e-10!115;UBERON:0000033!9.20e-10!123;UBERON:0005743!1.21e-09!86;UBERON:0000153!1.91e-09!129;UBERON:0007811!1.91e-09!129;UBERON:0000073!2.17e-09!94;UBERON:0001016!2.17e-09!94;UBERON:0001017!6.37e-09!82;UBERON:0000924!7.51e-09!173;UBERON:0006601!7.51e-09!173;UBERON:0003075!7.76e-09!86;UBERON:0007284!7.76e-09!86;UBERON:0004121!8.28e-09!169;UBERON:0002346!8.99e-09!90;UBERON:0000955!3.92e-08!69;UBERON:0006238!3.92e-08!69;UBERON:0001049!1.11e-07!57;UBERON:0005068!1.11e-07!57;UBERON:0006241!1.11e-07!57;UBERON:0007135!1.11e-07!57;UBERON:0002616!3.96e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.94e-13;2!UBERON:0002757;4.94e-13;2!UBERON:0010134;4.94e-13;2!UBERON:0005408;4.94e-13;2!UBERON:0001899;4.94e-13;2!UBERON:0003296;6.39e-07;4!UBERON:0010133;6.39e-07;4!UBERON:0002784;6.39e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.94e-13,2;UBERON:0002757,4.94e-13,2;UBERON:0010134,4.94e-13,2;UBERON:0005408,4.94e-13,2;UBERON:0001899,4.94e-13,2;UBERON:0003296,6.39e-07,4;UBERON:0010133,6.39e-07,4;UBERON:0002784,6.39e-07,4;UBERON:0005418,7.15e-07,1;UBERON:0001389,7.15e-07,1;UBERON:0000026,7.15e-07,1;UBERON:0008784,7.15e-07,1;UBERON:0006058,7.15e-07,1;UBERON:0003663,7.15e-07,1;UBERON:0004256,7.15e-07,1;UBERON:0004708,7.15e-07,1;UBERON:0002101,7.15e-07,1;UBERON:0004709,7.15e-07,1;UBERON:0002529,7.15e-07,1;UBERON:0010538,7.15e-07,1;UBERON:0003661,7.15e-07,1;UBERON:0010890,7.15e-07,1;UBERON:0002471,7.15e-07,1;UBERON:0001383,7.15e-07,1;UBERON:0004357,7.15e-07,1;UBERON:0004347,7.15e-07,1;UBERON:0005420,7.15e-07,1;UBERON:0005732,7.15e-07,1;UBERON:0010758,7.15e-07,1;UBERON:0010707,7.15e-07,1;UBERON:0000978,7.15e-07,1;UBERON:0002103,7.15e-07,1;UBERON:0001665,7.15e-07,1;UBERON:0003823,7.15e-07,1;UBERON:0000154,7.15e-07,1;UBERON:0010709,7.15e-07,1;UBERON:0005733,7.15e-07,1;UBERON:0005730,7.15e-07,1;UBERON:0002146,9.51e-07,1;UBERON:0005623,9.51e-07,1 | |||
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|short_description=p4@MCC | |short_description=p4@MCC | ||
}} | }} |
Latest revision as of 18:42, 19 September 2015
Short description: | p4@MCC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MCC_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | 0bp_to_ENST00000506605_5end |
EntrezGene: | MCC |
HGNC: | 6935 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.13e-35 | 10 |
melanoblast | 1.13e-35 | 10 |
pigment cell | 3.80e-25 | 14 |
migratory neural crest cell | 5.06e-23 | 41 |
light melanocyte | 2.75e-18 | 3 |
neurecto-epithelial cell | 3.07e-17 | 20 |
neurectodermal cell | 2.33e-15 | 59 |
columnar/cuboidal epithelial cell | 1.88e-12 | 27 |
ectodermal cell | 3.77e-12 | 72 |
ecto-epithelial cell | 1.23e-09 | 34 |
glial cell (sensu Vertebrata) | 4.09e-08 | 15 |
glial cell | 4.09e-08 | 15 |
glioblast | 4.09e-08 | 15 |
glioblast (sensu Vertebrata) | 4.09e-08 | 15 |
astrocyte of the cerebral cortex | 4.20e-08 | 3 |
germ line cell | 1.32e-07 | 7 |
germ cell | 1.32e-07 | 7 |
oligodendrocyte | 1.70e-07 | 7 |
macroglial cell | 1.70e-07 | 7 |
astrocyte | 1.70e-07 | 7 |
oligodendrocyte precursor cell | 1.70e-07 | 7 |
neuron associated cell | 3.12e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 3.12e-07 | 17 |
dark melanocyte | 4.25e-07 | 1 |