FFCP PHASE1:Hg19::chr6:31555045..31555057,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7940 | |EntrezGene=7940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14189 | |HGNC=14189 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000460834_5end | |association_with_transcript=13bp_to_ENST00000460834_5end | ||
|cluster_id=chr6:31555045..31555057,+ | |||
|coexpression_cluster_id=C92 | |||
|description=CAGE_peak_9_at_LST1_5end | |description=CAGE_peak_9_at_LST1_5end | ||
|id=chr6:31555045..31555057,+ | |id=chr6:31555045..31555057,+ | ||
|ontology_enrichment_celltype=CL:0000766!2.32e-63!76;CL:0002009!4.74e-63!65;CL:0002194!7.03e-61!63;CL:0000576!7.03e-61!63;CL:0000040!7.03e-61!63;CL:0000559!7.03e-61!63;CL:0002057!3.45e-59!42;CL:0000557!5.15e-56!71;CL:0000860!3.95e-54!45;CL:0000839!7.80e-53!70;CL:0000763!9.14e-50!112;CL:0000049!9.14e-50!112;CL:0000738!1.06e-41!140;CL:0000037!3.20e-37!172;CL:0000566!3.20e-37!172;CL:0002087!5.66e-37!119;CL:0002032!8.97e-35!165;CL:0000837!8.97e-35!165;CL:0000988!1.03e-33!182;CL:0002031!5.90e-33!124;CL:0002393!2.58e-14!9;CL:0002397!2.58e-14!9;CL:0000094!3.17e-09!8;CL:0000134!5.72e-07!358 | |ontology_enrichment_celltype=CL:0000766!2.32e-63!76;CL:0002009!4.74e-63!65;CL:0002194!7.03e-61!63;CL:0000576!7.03e-61!63;CL:0000040!7.03e-61!63;CL:0000559!7.03e-61!63;CL:0002057!3.45e-59!42;CL:0000557!5.15e-56!71;CL:0000860!3.95e-54!45;CL:0000839!7.80e-53!70;CL:0000763!9.14e-50!112;CL:0000049!9.14e-50!112;CL:0000738!1.06e-41!140;CL:0000037!3.20e-37!172;CL:0000566!3.20e-37!172;CL:0002087!5.66e-37!119;CL:0002032!8.97e-35!165;CL:0000837!8.97e-35!165;CL:0000988!1.03e-33!182;CL:0002031!5.90e-33!124;CL:0002393!2.58e-14!9;CL:0002397!2.58e-14!9;CL:0000094!3.17e-09!8;CL:0000134!5.72e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.39e-78;33!CL:0002057;5.39e-78;33!CL:0000473;7.37e-77;39!CL:0000234;7.37e-77;39!CL:0000576;3.73e-63;48!CL:0000766;2.29e-52;69!CL:0000763;4.51e-23;100!CL:0002087;3.51e-17;104!CL:0002393;3.70e-17;6!CL:0002397;3.70e-17;6!CL:0000094;1.64e-16;8!CL:0000235;2.27e-15;6!CL:0000738;3.54e-15;136!CL:0000081;1.06e-11;11!CL:0000875;2.69e-10;3!CL:0002396;2.69e-10;3!CL:0000767;8.56e-10;3!CL:0000988;4.27e-09;177!CL:0000226;1.52e-08;3!CL:0000842;1.52e-08;3!CL:0000219;8.19e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.43e-126,48;CL:0000234,2.43e-126,48;CL:0000766,5.03e-114,72;CL:0000860,1.10e-111,42;CL:0002057,1.10e-111,42;CL:0002194,6.80e-107,59;CL:0000576,6.80e-107,59;CL:0000040,6.80e-107,59;CL:0000559,6.80e-107,59;CL:0002009,5.15e-103,61;CL:0000839,2.49e-94,66;CL:0000557,9.56e-93,67;CL:0000763,2.92e-74,108;CL:0000049,2.92e-74,108;CL:0000738,2.52e-65,136;CL:0002087,2.03e-60,115;CL:0000037,5.78e-52,168;CL:0002031,1.88e-50,120;CL:0002032,7.31e-49,161;CL:0000837,7.31e-49,161;CL:0000988,1.42e-48,177;CL:0002393,8.70e-26,9;CL:0002397,8.70e-26,9;CL:0000134,1.11e-17,354;CL:0002320,4.78e-17,361;CL:0000094,1.55e-16,8;CL:0000235,2.96e-15,6;CL:0000219,8.13e-15,386;CL:0000048,4.27e-12,427;CL:0000034,6.73e-12,441;CL:0000723,1.01e-11,433;CL:0000081,1.02e-11,11;CL:0000875,2.69e-10,3;CL:0002396,2.69e-10,3;CL:0000767,8.94e-10,3;CL:0000226,1.56e-08,3;CL:0000842,1.56e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;5.45e-79;42!CL:0000049;6.17e-22;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.34e-59!102;UBERON:0003061!7.34e-59!102;UBERON:0002193!1.13e-54!112;UBERON:0002371!1.90e-47!80;UBERON:0001474!9.65e-43!86;UBERON:0002405!2.65e-37!115;UBERON:0004765!1.83e-33!101;UBERON:0001434!1.83e-33!101;UBERON:0003081!3.19e-21!216;UBERON:0007023!1.15e-18!115;UBERON:0002204!1.04e-13!167;UBERON:0000178!7.38e-10!15;UBERON:0000179!7.38e-10!15;UBERON:0000463!7.38e-10!15 | |ontology_enrichment_uberon=UBERON:0002390!7.34e-59!102;UBERON:0003061!7.34e-59!102;UBERON:0002193!1.13e-54!112;UBERON:0002371!1.90e-47!80;UBERON:0001474!9.65e-43!86;UBERON:0002405!2.65e-37!115;UBERON:0004765!1.83e-33!101;UBERON:0001434!1.83e-33!101;UBERON:0003081!3.19e-21!216;UBERON:0007023!1.15e-18!115;UBERON:0002204!1.04e-13!167;UBERON:0000178!7.38e-10!15;UBERON:0000179!7.38e-10!15;UBERON:0000463!7.38e-10!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.50e-18;15!UBERON:0000179;1.50e-18;15!UBERON:0000463;1.50e-18;15!UBERON:0002390;1.60e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.58e-98,98;UBERON:0003061,1.58e-98,98;UBERON:0002193,4.09e-88,108;UBERON:0002371,2.41e-80,76;UBERON:0001474,1.43e-73,82;UBERON:0002405,4.25e-69,93;UBERON:0004765,6.24e-66,90;UBERON:0001434,4.38e-58,100;UBERON:0003081,4.44e-40,203;UBERON:0002204,1.17e-29,167;UBERON:0000926,1.52e-20,315;UBERON:0004120,1.52e-20,315;UBERON:0006603,1.52e-20,315;UBERON:0000178,1.22e-18,15;UBERON:0000179,1.22e-18,15;UBERON:0000463,1.22e-18,15;UBERON:0002384,3.50e-16,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.0283995035386,5.37361157336098,7.43117391917165,0,0,0,0,0,0,3.32397245119126,2.80762226458198,3.25516306073778,2.01523926815932,0.32389366601898,0,5.67053131240302,4.1566353805769,6.30718559088322,4.64858073811369,2.46700732813095,8.05236564327269,8.05538698502021,6.14785695669842,7.80391358632331,2.41321976515633,3.87290810150296,1.35426486594342,4.70605848856512,3.0019676506363,8.7642158933583,6.42776173978895,4.49300637906531,5.11469700639233,9.56568770541477,4.58766412529753,5.54092175692502,4.64334781805734,2.26954089876456,2.4912889959823,5.02497330513487,7.30076085788282,8.47036494349955,3.63239701580021,1.84138817993782,7.91155968602211,36.9696751045898,45.4973201925193,25.5783547520219,5.84108881961775,3.60424542819615,3.53596290733576,130.250823889751,126.908840053019,89.5054353446706,1.75996244461323,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.127986611154418,0,0.947109008176067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0.870648686496336,1.19662164466979,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,2.10603838625314,2.0808362720422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,4.01805673145701,4.21667878966063,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0.335032530668698,0,2.24702107184155,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10152039184331,3.23571301227925,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,2.53723804616085,1.52927441428475,2.27858874869665,1.66762242820452,3.29089818468955,1.94541993357815,3.24018862342869,1.58625035258854,0,0,0,0,0,0,0,0.798317485731266,1.1490322207942,0.846694330895531,0,0,0,0,0,0.677167111206413,0.802940375518498,0,0,0,0,0.894704431569664,0.333698283423817,0.586164286206121,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.674921674654501,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.129282956361551,0.13223260174269,0,0,0.533937062838473,0,0.828478110694391,0.992332043623902,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.960225567247268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0.196308467114945,0.297046400327086,0,0,4.22927630909341,1.48253142339228,0,0,0,0,0,0,0.430018749454354,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.20686599172379,0.213233981900981,0,0.129177819672012,0.496597714366863,0,0.0636471582781649,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.0283995035386,5.37361157336098,7.43117391917165,0,0,0,0,0,0,3.32397245119126,2.80762226458198,3.25516306073778,2.01523926815932,0.32389366601898,0,5.67053131240302,4.1566353805769,6.30718559088322,4.64858073811369,2.46700732813095,8.05236564327269,8.05538698502021,6.14785695669842,7.80391358632331,2.41321976515633,3.87290810150296,1.35426486594342,4.70605848856512,3.0019676506363,8.7642158933583,6.42776173978895,4.49300637906531,5.11469700639233,9.56568770541477,4.58766412529753,5.54092175692502,4.64334781805734,2.26954089876456,2.4912889959823,5.02497330513487,7.30076085788282,8.47036494349955,3.63239701580021,1.84138817993782,7.91155968602211,36.9696751045898,45.4973201925193,25.5783547520219,5.84108881961775,3.60424542819615,3.53596290733576,130.250823889751,126.908840053019,89.5054353446706,1.75996244461323,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0.451725357233318,0.127986611154418,0,0.947109008176067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0.324547393654683,0.870648686496336,1.19662164466979,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96973604869918,2.10603838625314,2.0808362720422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,4.01805673145701,4.21667878966063,0,0,0,0,0,0,0,0.394061520403854,0,0,0,0,0,0.335032530668698,0,2.24702107184155,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10152039184331,3.23571301227925,1.921096040462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,2.53723804616085,1.52927441428475,2.27858874869665,1.66762242820452,3.29089818468955,1.94541993357815,3.24018862342869,1.58625035258854,0,0,0,0,0,0,0,0.798317485731266,1.1490322207942,0.846694330895531,0,0,0,0,0,0.677167111206413,0.802940375518498,0,0,0,0,0.894704431569664,0.333698283423817,0.586164286206121,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0.674921674654501,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.129282956361551,0.13223260174269,0,0,0.533937062838473,0,0.828478110694391,0.992332043623902,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0.960225567247268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0.196308467114945,0.297046400327086,0,0,4.22927630909341,1.48253142339228,0,0,0,0,0,0,0.430018749454354,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.20686599172379,0.213233981900981,0,0.129177819672012,0.496597714366863,0,0.0636471582781649,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p9@LST1 | |short_description=p9@LST1 | ||
}} | }} |
Latest revision as of 22:06, 17 September 2015
Short description: | p9@LST1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LST1_5end |
Coexpression cluster: | C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole |
Association with transcript: | 13bp_to_ENST00000460834_5end |
EntrezGene: | LST1 |
HGNC: | 14189 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.58e-98 | 98 |
blood island | 1.58e-98 | 98 |
hemolymphoid system | 4.09e-88 | 108 |
bone marrow | 2.41e-80 | 76 |
bone element | 1.43e-73 | 82 |
immune system | 4.25e-69 | 93 |
skeletal element | 6.24e-66 | 90 |
skeletal system | 4.38e-58 | 100 |
lateral plate mesoderm | 4.44e-40 | 203 |
musculoskeletal system | 1.17e-29 | 167 |
mesoderm | 1.52e-20 | 315 |
mesoderm-derived structure | 1.52e-20 | 315 |
presumptive mesoderm | 1.52e-20 | 315 |
blood | 1.22e-18 | 15 |
haemolymphatic fluid | 1.22e-18 | 15 |
organism substance | 1.22e-18 | 15 |
connective tissue | 3.50e-16 | 371 |