FFCP PHASE1:Hg19::chr17:15555143..15555150,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:15555143..15555150,-
|short_description=p12@TRIM16
|description=CAGE_peak_12_at_TRIM16_5end
|association_with_transcript=109bp_to_uc002gor.1_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10626 | |EntrezGene=10626 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17241 | |HGNC=17241 | ||
|TSSclassifier=strong | |||
|UniProt=Q59EB2 | |UniProt=Q59EB2 | ||
|association_with_transcript=109bp_to_uc002gor.1_5end | |||
|cluster_id=chr17:15555143..15555150,- | |||
|description=CAGE_peak_12_at_TRIM16_5end | |||
|id=chr17:15555143..15555150,- | |||
|ontology_enrichment_celltype=CL:0000066!4.15e-12!254 | |||
|ontology_enrichment_celltype_v019=CL:0002553;3.99e-50;1!CL:0000650;7.14e-26;2!CL:1000500;7.14e-26;2!CL:1000618;7.14e-26;2!CL:1001318;7.14e-26;2!CL:0002173;7.14e-26;2!CL:0000669;1.13e-13;4!CL:0000128;1.89e-08;7!CL:0000126;1.89e-08;7!CL:0000127;1.89e-08;7!CL:0000039;2.18e-08;7!CL:1000746;2.18e-08;7!CL:1000612;2.18e-08;7!CL:0000586;2.18e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,2.42e-50,1;CL:0000650,9.18e-26,2;CL:1000500,9.18e-26,2;CL:1000618,9.18e-26,2;CL:1001318,9.18e-26,2;CL:0002173,9.18e-26,2;CL:0000669,1.29e-13,4;CL:0000128,1.89e-08,7;CL:0000126,1.89e-08,7;CL:0000127,1.89e-08,7;CL:0002453,1.89e-08,7;CL:0000039,2.18e-08,7;CL:0000586,2.18e-08,7;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!4.33e-08!14;DOID:305!2.31e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!2.88e-07!219;UBERON:0000344!7.08e-07!12;UBERON:0001444!7.19e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;7.14e-26;2!UBERON:0003838;7.14e-26;2!UBERON:0003586;7.14e-26;2!UBERON:0005169;7.14e-26;2!UBERON:0002321;7.14e-26;2!UBERON:0005215;7.14e-26;2!UBERON:0002303;7.14e-26;2!UBERON:0002319;7.14e-26;2!UBERON:0003891;1.13e-13;4!UBERON:0000074;2.18e-08;7!UBERON:0001229;2.18e-08;7!UBERON:0000473;1.69e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,9.18e-26,2;UBERON:0003838,9.18e-26,2;UBERON:0003586,9.18e-26,2;UBERON:0005169,9.18e-26,2;UBERON:0002321,9.18e-26,2;UBERON:0005215,9.18e-26,2;UBERON:0002303,9.18e-26,2;UBERON:0002319,9.18e-26,2;UBERON:0003891,1.29e-13,4;UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0000473,1.69e-07,8;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9 | |||
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| ||
|short_description=p12@TRIM16 | |||
}} | }} |
Latest revision as of 18:46, 18 September 2015
Short description: | p12@TRIM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_TRIM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 109bp_to_uc002gor.1_5end |
EntrezGene: | TRIM16 |
HGNC: | 17241 |
UniProt: | Q59EB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 2.42e-50 | 1 |
mesangial cell | 9.18e-26 | 2 |
kidney interstitial cell | 9.18e-26 | 2 |
juxtaglomerular complex cell | 9.18e-26 | 2 |
renal interstitial pericyte | 9.18e-26 | 2 |
extraglomerular mesangial cell | 9.18e-26 | 2 |
pericyte cell | 1.29e-13 | 4 |
oligodendrocyte | 1.89e-08 | 7 |
macroglial cell | 1.89e-08 | 7 |
astrocyte | 1.89e-08 | 7 |
oligodendrocyte precursor cell | 1.89e-08 | 7 |
germ line cell | 2.18e-08 | 7 |
germ cell | 2.18e-08 | 7 |
glomerular cell | 2.35e-08 | 7 |
kidney corpuscule cell | 2.35e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 9.18e-26 | 2 |
abdominal segment connective tissue | 9.18e-26 | 2 |
trunk connective tissue | 9.18e-26 | 2 |
interstitial tissue | 9.18e-26 | 2 |
extraglomerular mesangium | 9.18e-26 | 2 |
kidney interstitium | 9.18e-26 | 2 |
juxtaglomerular apparatus | 9.18e-26 | 2 |
mesangium | 9.18e-26 | 2 |
stroma | 1.29e-13 | 4 |
primitive nephron | 2.35e-08 | 7 |
renal glomerulus | 2.35e-08 | 7 |
renal corpuscle | 2.35e-08 | 7 |
glomerular capsule | 2.35e-08 | 7 |
metanephric mesenchyme | 2.35e-08 | 7 |
glomerular tuft | 2.35e-08 | 7 |
S-shaped body | 2.35e-08 | 7 |
renal vesicle | 2.35e-08 | 7 |
comma-shaped body | 2.35e-08 | 7 |
testis | 1.69e-07 | 8 |
mesonephric epithelium | 1.80e-07 | 8 |
mesonephric tubule | 1.80e-07 | 8 |
nephric duct | 1.80e-07 | 8 |
renal duct | 1.80e-07 | 8 |
mesonephric duct | 1.80e-07 | 8 |
pronephric duct | 1.80e-07 | 8 |
mesonephros | 8.85e-07 | 9 |
pronephros | 8.85e-07 | 9 |
nephrogenic cord | 8.85e-07 | 9 |
pronephric mesoderm | 8.85e-07 | 9 |
rostral part of nephrogenic cord | 8.85e-07 | 9 |
presumptive pronephric mesoderm | 8.85e-07 | 9 |