FFCP PHASE1:Hg19::chr17:41322332..41322351,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:41322332..41322351,-
|short_description=p4@BRCA1
|description=CAGE_peak_4_at_BRCA1_5end
|association_with_transcript=-42bp_to_ENST00000393691_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=672 | |EntrezGene=672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1100 | |HGNC=1100 | ||
|TSSclassifier=strong | |||
|UniProt=P38398 | |UniProt=P38398 | ||
|association_with_transcript=-42bp_to_ENST00000393691_5end | |||
|cluster_id=chr17:41322332..41322351,- | |||
|description=CAGE_peak_4_at_BRCA1_5end | |||
|id=chr17:41322332..41322351,- | |||
|ontology_enrichment_celltype=CL:0000542!6.03e-08!53;CL:0000051!6.03e-08!53;CL:0000838!8.21e-08!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.42e-07,53;CL:0000051,1.42e-07,53;CL:0000838,1.97e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.54e-07;82 | |||
|ontology_enrichment_disease=DOID:162!6.78e-09!235;DOID:14566!6.14e-08!239;DOID:305!1.74e-07!106;DOID:0050687!4.51e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.80e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.23e-20!115;UBERON:0001049!1.52e-16!57;UBERON:0005068!1.52e-16!57;UBERON:0006241!1.52e-16!57;UBERON:0007135!1.52e-16!57;UBERON:0001017!1.31e-14!82;UBERON:0000955!2.93e-14!69;UBERON:0006238!2.93e-14!69;UBERON:0005743!4.42e-14!86;UBERON:0000073!5.97e-13!94;UBERON:0001016!5.97e-13!94;UBERON:0002616!1.57e-12!59;UBERON:0003080!6.85e-12!42;UBERON:0002780!1.36e-11!41;UBERON:0001890!1.36e-11!41;UBERON:0006240!1.36e-11!41;UBERON:0002346!4.05e-10!90;UBERON:0003075!9.10e-10!86;UBERON:0007284!9.10e-10!86;UBERON:0002619!1.62e-09!22;UBERON:0002020!4.08e-09!34;UBERON:0003528!4.08e-09!34;UBERON:0001950!1.36e-08!20;UBERON:0001893!1.46e-08!34;UBERON:0001869!2.67e-08!32;UBERON:0002791!2.86e-08!33;UBERON:0000956!3.69e-08!25;UBERON:0000203!3.69e-08!25;UBERON:0000153!3.17e-07!129;UBERON:0007811!3.17e-07!129;UBERON:0003056!6.47e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;9.90e-10;22!UBERON:0000073;1.10e-09;53!UBERON:0002616;1.10e-09;53!UBERON:0002780;3.69e-09;41!UBERON:0001890;3.69e-09;41!UBERON:0001950;1.09e-08;20!UBERON:0000956;1.70e-08;25!UBERON:0000203;1.70e-08;25!UBERON:0002791;1.06e-07;32!UBERON:0003528;1.17e-07;34!UBERON:0002020;1.17e-07;34!UBERON:0001869;1.26e-07;32!UBERON:0001893;2.20e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.57e-22,114;UBERON:0001049,1.38e-16,56;UBERON:0005068,1.38e-16,56;UBERON:0006241,1.38e-16,56;UBERON:0007135,1.38e-16,56;UBERON:0000073,2.30e-15,53;UBERON:0002616,2.30e-15,53;UBERON:0000955,1.98e-14,68;UBERON:0006238,1.98e-14,68;UBERON:0001017,3.14e-14,81;UBERON:0001016,2.85e-13,89;UBERON:0002780,1.21e-11,41;UBERON:0001890,1.21e-11,41;UBERON:0003080,1.21e-11,41;UBERON:0006240,1.21e-11,41;UBERON:0011216,2.47e-10,223;UBERON:0002346,6.06e-10,86;UBERON:0002619,7.76e-10,22;UBERON:0003075,1.43e-09,82;UBERON:0007284,1.43e-09,82;UBERON:0003528,5.05e-09,34;UBERON:0002020,5.05e-09,34;UBERON:0001950,7.50e-09,20;UBERON:0001893,1.88e-08,34;UBERON:0000956,3.16e-08,25;UBERON:0000203,3.16e-08,25;UBERON:0001869,3.63e-08,32;UBERON:0002791,5.10e-08,32 | |||
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| ||
|short_description=p4@BRCA1 | |||
}} | }} |
Latest revision as of 17:38, 24 September 2015
Short description: | p4@BRCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_BRCA1_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_ENST00000393691_5end |
EntrezGene: | BRCA1 |
HGNC: | 1100 |
UniProt: | P38398 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.42e-07 | 53 |
common lymphoid progenitor | 1.42e-07 | 53 |
lymphoid lineage restricted progenitor cell | 1.97e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.57e-22 | 114 |
neural tube | 1.38e-16 | 56 |
neural rod | 1.38e-16 | 56 |
future spinal cord | 1.38e-16 | 56 |
neural keel | 1.38e-16 | 56 |
regional part of nervous system | 2.30e-15 | 53 |
regional part of brain | 2.30e-15 | 53 |
brain | 1.98e-14 | 68 |
future brain | 1.98e-14 | 68 |
central nervous system | 3.14e-14 | 81 |
nervous system | 2.85e-13 | 89 |
regional part of forebrain | 1.21e-11 | 41 |
forebrain | 1.21e-11 | 41 |
anterior neural tube | 1.21e-11 | 41 |
future forebrain | 1.21e-11 | 41 |
organ system subdivision | 2.47e-10 | 223 |
neurectoderm | 6.06e-10 | 86 |
regional part of cerebral cortex | 7.76e-10 | 22 |
neural plate | 1.43e-09 | 82 |
presumptive neural plate | 1.43e-09 | 82 |
brain grey matter | 5.05e-09 | 34 |
gray matter | 5.05e-09 | 34 |
neocortex | 7.50e-09 | 20 |
telencephalon | 1.88e-08 | 34 |
cerebral cortex | 3.16e-08 | 25 |
pallium | 3.16e-08 | 25 |
cerebral hemisphere | 3.63e-08 | 32 |
regional part of telencephalon | 5.10e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.80e-07 | 235 |